4HG5A

Structural insights into yeast nit2: wild-type yeast nit2 in complex with oxaloacetate
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
304
structure length
304
Chain Sequence
KLKRVAVAQLCSSADLTKNLKVVKELISEAIQKKADVVFLPEASDYLSQNPLHSRYLAQKSPKFIRQLQSSITDLVRDNSRNIDVSIGVHLPPSEQDLLEGNDRVRNVLLYIDHEGKILQEYQKLHLFDVDVPNGPILKESKSVQPGKAIPDIIESPLGKLGSAICYDIRFPEFSLKLRSMGAEILCFPSAFTIKTGEAHWELLGRARAVDTQCYVLMPGQVGMHDLSDPEWEKQSHMSALEKSSRRESWGHSMVIDPWGKIIAHADPSTVGPQLILADLDRELLQEIRNKMPLWNQRRDDLFH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Probable hydrolase NIT2
publication title Structures of enzyme-intermediate complexes of yeast Nit2: insights into its catalytic mechanism and different substrate specificity compared with mammalian Nit2
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 90
structure length 304
sequence length 304
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.128: Deaminated glutathione amidase.
pdb deposition date 2012-10-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 4hg5A00
4GYLA 3KLCA 4IZWA 4IZVA 2GGKA 3HKXA 1FO6A 2DYUA 3DLAA 4KZFA 1UF5A 4GYNA 1F89A 3ILVA 3KI8A 4IZSA 3P8KA 1EMSA 4IZTA 4HG3A 5H8LA 4HG5A 3SEZA 4CYFA 3SEQA 3IW3A 3IVZA 2E2LA 4IZUA 3SZGA 2W1VA 2VHIA 2GGLA 2E11A 5H8IA 2VHHA 5H8KA 5KHAA 4CYYA 1UF4A 4CYGA 4LF0A 2UXYA 3WUYA 1UF8A 1UF7A 2E2KA 3SYTA 3SDBA 5H8JA 2DYVA 4HGDA 4F4HA 3N05A 1ERZA 1J31A 4H5UA 2PLQA 5JQNA
chains in the Genus database with same CATH superfamily
4GYLA 3KLCA 4IZWA 4IZVA 2GGKA 3HKXA 1FO6A 2DYUA 3DLAA 4KZFA 1UF5A 4GYNA 1F89A 3ILVA 3KI8A 4IZSA 3P8KA 1EMSA 4IZTA 4HG3A 5H8LA 4HG5A 3SEZA 4CYFA 3SEQA 3IW3A 3IVZA 2E2LA 4IZUA 3SZGA 2W1VA 2VHIA 2GGLA 2E11A 5H8IA 2VHHA 5H8KA 5KHAA 4CYYA 1UF4A 4CYGA 4LF0A 2UXYA 3WUYA 1UF8A 1UF7A 2E2KA 3SYTA 3SDBA 5H8JA 2DYVA 4HGDA 4F4HA 3N05A 1ERZA 1J31A 4H5UA 2PLQA 5JQNA
chains in the Genus database with same CATH topology
4GYLA 3KLCA 4IZWA 4IZVA 2GGKA 3HKXA 1FO6A 2DYUA 3DLAA 4KZFA 1UF5A 4GYNA 1F89A 3ILVA 3KI8A 4IZSA 3P8KA 1EMSA 4IZTA 4HG3A 5H8LA 4HG5A 3SEZA 4CYFA 3SEQA 3IW3A 3IVZA 2E2LA 4IZUA 3SZGA 2W1VA 2VHIA 2GGLA 2E11A 5H8IA 2VHHA 5H8KA 5KHAA 4CYYA 1UF4A 4CYGA 4LF0A 2UXYA 3WUYA 1UF8A 1UF7A 2E2KA 3SYTA 3SDBA 5H8JA 2DYVA 4HGDA 4F4HA 3N05A 1ERZA 1J31A 4H5UA 2PLQA 5JQNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GYL A;  3KLC A;  4IZW A;  4IZV A;  2GGK A;  3HKX A;  1FO6 A;  2DYU A;  3DLA A;  4KZF A;  1UF5 A;  4GYN A;  1F89 A;  3ILV A;  3KI8 A;  4IZS A;  3P8K A;  1EMS A;  4IZT A;  4HG3 A;  5H8L A;  4HG5 A;  3SEZ A;  4CYF A;  3SEQ A;  3IW3 A;  3IVZ A;  2E2L A;  4IZU A;  3SZG A;  2W1V A;  2VHI A;  2GGL A;  2E11 A;  5H8I A;  2VHH A;  5H8K A;  5KHA A;  4CYY A;  1UF4 A;  4CYG A;  4LF0 A;  2UXY A;  3WUY A;  1UF8 A;  1UF7 A;  2E2K A;  3SYT A;  3SDB A;  5H8J A;  2DYV A;  4HGD A;  4F4H A;  3N05 A;  1ERZ A;  1J31 A;  4H5U A;  2PLQ A;  5JQN A; 
#chains in the Genus database with same CATH topology
 4GYL A;  3KLC A;  4IZW A;  4IZV A;  2GGK A;  3HKX A;  1FO6 A;  2DYU A;  3DLA A;  4KZF A;  1UF5 A;  4GYN A;  1F89 A;  3ILV A;  3KI8 A;  4IZS A;  3P8K A;  1EMS A;  4IZT A;  4HG3 A;  5H8L A;  4HG5 A;  3SEZ A;  4CYF A;  3SEQ A;  3IW3 A;  3IVZ A;  2E2L A;  4IZU A;  3SZG A;  2W1V A;  2VHI A;  2GGL A;  2E11 A;  5H8I A;  2VHH A;  5H8K A;  5KHA A;  4CYY A;  1UF4 A;  4CYG A;  4LF0 A;  2UXY A;  3WUY A;  1UF8 A;  1UF7 A;  2E2K A;  3SYT A;  3SDB A;  5H8J A;  2DYV A;  4HGD A;  4F4H A;  3N05 A;  1ERZ A;  1J31 A;  4H5U A;  2PLQ A;  5JQN A; 
#chains in the Genus database with same CATH homology
 4GYL A;  3KLC A;  4IZW A;  4IZV A;  2GGK A;  3HKX A;  1FO6 A;  2DYU A;  3DLA A;  4KZF A;  1UF5 A;  4GYN A;  1F89 A;  3ILV A;  3KI8 A;  4IZS A;  3P8K A;  1EMS A;  4IZT A;  4HG3 A;  5H8L A;  4HG5 A;  3SEZ A;  4CYF A;  3SEQ A;  3IW3 A;  3IVZ A;  2E2L A;  4IZU A;  3SZG A;  2W1V A;  2VHI A;  2GGL A;  2E11 A;  5H8I A;  2VHH A;  5H8K A;  5KHA A;  4CYY A;  1UF4 A;  4CYG A;  4LF0 A;  2UXY A;  3WUY A;  1UF8 A;  1UF7 A;  2E2K A;  3SYT A;  3SDB A;  5H8J A;  2DYV A;  4HGD A;  4F4H A;  3N05 A;  1ERZ A;  1J31 A;  4H5U A;  2PLQ A;  5JQN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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