4IC0A

Crystal structure of pai-1 in complex with gallate
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
375
structure length
366
Chain Sequence
PSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISHLLGTGAVQQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVALALQKVKIEVNESVIVSARMAPEEIIIDRPFLFVVRHNPTGTVLFMGQVMEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords Plasminogen activator inhibitor 1
publication title Crystal Structure of PAI-1 in Complex with Gallate
rcsb
source organism Homo sapiens
total genus 113
structure length 366
sequence length 375
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 4ic0A02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 4ic0A01
2WXWA 4AU3A 4BB2A 4P0OA 4AJTA 5C98A 1BR8I 1YXAA 2WXZA 1ANTI 3VVJA 1OYHL 1KCTA 3R4LA 5HGCA 4AU2A 4DTEA 1F0CA 1DZHI 1UHGA 5INWA 1NQ9I 1JMJA 4ZK0A 1EZXA 8APIA 3DRMA 1DB2A 2XN7A 4PYWA 4AQHA 2WXYC 3T1PA 2ACHA 2OL2A 1ATTA 1JMOA 3F02A 3KCGI 1AZXI 1QLPA 4YIAA 2H4RA 2OAYA 4EB1L 4ZK3A 1PSIA 2ANTI 1IZ2A 3NDAA 1OVAB 1ATHA 4Y3KA 2PEFA 4RO9A 3DRUA 4IF8A 2PEEA 3CVMA 1A7CA 3DLWA 3Q03A 2H4QA 4Y40A 2GD4C 3CWLA 1WZ9A 1QMNA 4AU3B 2QUGA 3UT3A 4DY7C 1TB6I 2H4PA 2VDXA 2CEOA 3B9FI 1DVNA 1MTPA 2R9YA 5CDZA 1DZGL 2RIVA 5EI0A 1JRRA 2HIJI 1C8OA 1E05I 2BEHI 3EOXA 3OZQA 1LK6I 2WY1A 2WXXA 3LW2A 3LE2A 3ZHAA 4KDSA 4R9IA 2VH4A 3H5CA 1E04I 1JVQI 2HI9A 2V95A 1DZHL 2VDYA 3F1SA 2B4XI 1IMVA 1XQJA 1R1LI 1SR5A 3DY0A 4C49A 3Q02A 4RSQA 1HLEA 4ROAA 4ROBA 7APIA 2DUTA 1OVAC 1D5SA 2HIJL 4C41A 3EVJI 1DVMA 1ATUA 2BEHL 1OYHI 4DY0A 4G8OA 1B3KA 3PB1I 2ZNHA 3STOA 4G8RA 1LJ5A 1XU8A 2ARRA 1XQGA 4P0FA 4AJUA 2WXZC 1OC0A 2XN6A 3FGQA 2ZV6A 4AFXA 2XN5A 5IO1A 1JTIA 2ARQA 1K9OI 2WY0C 1HP7A 4EB1I 1JJOC 2XN3A 3NDDA 1BY7A 2RIWA 1C5GA 1OO8A 3PZFA 5CDXA 1SEKA 4AU4A 4GA7A 4IC0A 2D26A 1LQ8A 2B5TI 5CE0A 3F5NA 5BRRI 3NE4A 1OVAA 1AS4A 1QMBA 3NDFA 4X30A 3CWMA 1M93B 2B4XL 1SNGA 4CAAA 3CAAA 9PAIA 1E03I 1DZGI 9APIA 1OPHA 1T1FA
chains in the Genus database with same CATH superfamily
2WXWA 4AU3A 4BB2A 4P0OA 4AJTA 5C98A 1BR8I 1YXAA 2WXZA 1ANTI 3VVJA 1OYHL 1KCTA 3R4LA 5HGCA 4AU2A 4DTEA 1F0CA 1DZHI 1UHGA 5INWA 1NQ9I 1JMJA 4ZK0A 1EZXA 8APIA 3DRMA 1DB2A 2XN7A 4PYWA 4AQHA 2WXYC 3T1PA 2ACHA 2OL2A 1ATTA 1JMOA 3F02A 3KCGI 1AZXI 1QLPA 4YIAA 2H4RA 2OAYA 4EB1L 4ZK3A 1PSIA 2ANTI 1IZ2A 3NDAA 1OVAB 1ATHA 4Y3KA 2PEFA 4RO9A 3DRUA 4IF8A 2PEEA 3CVMA 1A7CA 3DLWA 3Q03A 2H4QA 4Y40A 2GD4C 3CWLA 1WZ9A 1QMNA 4AU3B 2QUGA 3UT3A 4DY7C 1TB6I 2H4PA 2VDXA 2CEOA 3B9FI 1DVNA 1MTPA 2R9YA 5CDZA 1DZGL 2RIVA 5EI0A 1JRRA 2HIJI 1C8OA 1E05I 2BEHI 3EOXA 3OZQA 1LK6I 2WY1A 2WXXA 3LW2A 3LE2A 3ZHAA 4KDSA 4R9IA 2VH4A 3H5CA 1E04I 1JVQI 2HI9A 2V95A 1DZHL 2VDYA 3F1SA 2B4XI 1IMVA 1XQJA 1R1LI 1SR5A 3DY0A 4C49A 3Q02A 4RSQA 1HLEA 4ROAA 4ROBA 7APIA 2DUTA 1OVAC 1D5SA 2HIJL 4C41A 3EVJI 1DVMA 1ATUA 2BEHL 1OYHI 4DY0A 4G8OA 1B3KA 3PB1I 2ZNHA 3STOA 4G8RA 1LJ5A 1XU8A 2ARRA 1XQGA 4P0FA 4AJUA 2WXZC 1OC0A 2XN6A 3FGQA 2ZV6A 4AFXA 2XN5A 5IO1A 1JTIA 2ARQA 1K9OI 2WY0C 1HP7A 4EB1I 1JJOC 2XN3A 3NDDA 1BY7A 2RIWA 1C5GA 1OO8A 3PZFA 5CDXA 1SEKA 4AU4A 4GA7A 4IC0A 2D26A 1LQ8A 2B5TI 5CE0A 3F5NA 5BRRI 3NE4A 1OVAA 1AS4A 1QMBA 3NDFA 4X30A 3CWMA 1M93B 2B4XL 1SNGA 4CAAA 3CAAA 9PAIA 1E03I 1DZGI 9APIA 1OPHA 1T1FA
chains in the Genus database with same CATH topology
2WXWA 4AU3A 4BB2A 4P0OA 4AJTA 5C98A 1BR8I 1YXAA 2WXZA 1ANTI 3VVJA 1OYHL 1KCTA 3R4LA 5HGCA 4AU2A 4DTEA 1F0CA 1DZHI 1UHGA 5INWA 1NQ9I 1JMJA 4ZK0A 1EZXA 8APIA 3DRMA 1DB2A 2XN7A 4PYWA 4AQHA 2WXYC 3T1PA 2ACHA 2OL2A 1ATTA 1JMOA 3F02A 3KCGI 1AZXI 1QLPA 4YIAA 2H4RA 2OAYA 4EB1L 4ZK3A 1PSIA 2ANTI 1IZ2A 3NDAA 1OVAB 1ATHA 4Y3KA 2PEFA 4RO9A 3DRUA 4IF8A 2PEEA 3CVMA 1A7CA 3DLWA 3Q03A 2H4QA 4Y40A 2GD4C 3CWLA 1WZ9A 1QMNA 4AU3B 2QUGA 3UT3A 4DY7C 1TB6I 2H4PA 2VDXA 2CEOA 3B9FI 1DVNA 1MTPA 2R9YA 5CDZA 1DZGL 2RIVA 5EI0A 1JRRA 2HIJI 1C8OA 1E05I 2BEHI 3EOXA 3OZQA 1LK6I 2WY1A 2WXXA 3LW2A 3LE2A 3ZHAA 4KDSA 4R9IA 2VH4A 3H5CA 1E04I 1JVQI 2HI9A 2V95A 1DZHL 2VDYA 3F1SA 2B4XI 1IMVA 1XQJA 1R1LI 1SR5A 3DY0A 4C49A 3Q02A 4RSQA 1HLEA 4ROAA 4ROBA 7APIA 2DUTA 1OVAC 1D5SA 2HIJL 4C41A 3EVJI 1DVMA 1ATUA 2BEHL 1OYHI 4DY0A 4G8OA 1B3KA 3PB1I 2ZNHA 3STOA 4G8RA 1LJ5A 1XU8A 2ARRA 1XQGA 4P0FA 4AJUA 2WXZC 1OC0A 2XN6A 3FGQA 2ZV6A 4AFXA 2XN5A 5IO1A 1JTIA 2ARQA 1K9OI 2WY0C 1HP7A 4EB1I 1JJOC 2XN3A 3NDDA 1BY7A 2RIWA 1C5GA 1OO8A 3PZFA 5CDXA 1SEKA 4AU4A 4GA7A 4IC0A 2D26A 1LQ8A 2B5TI 5CE0A 3F5NA 5BRRI 3NE4A 1OVAA 1AS4A 1QMBA 3NDFA 4X30A 3CWMA 1M93B 2B4XL 1SNGA 4CAAA 3CAAA 9PAIA 1E03I 1DZGI 9APIA 1OPHA 1T1FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WXW A;  4AU3 A;  4BB2 A;  4P0O A;  4AJT A;  5C98 A;  1BR8 I;  1YXA A;  2WXZ A;  1ANT I;  3VVJ A;  1OYH L;  1KCT A;  3R4L A;  5HGC A;  4AU2 A;  4DTE A;  1F0C A;  1DZH I;  1UHG A;  5INW A;  1NQ9 I;  1JMJ A;  4ZK0 A;  1EZX A;  8API A;  3DRM A;  1DB2 A;  2XN7 A;  4PYW A;  4AQH A;  2WXY C;  3T1P A;  2ACH A;  2OL2 A;  1ATT A;  1JMO A;  3F02 A;  3KCG I;  1AZX I;  1QLP A;  4YIA A;  2H4R A;  2OAY A;  4EB1 L;  4ZK3 A;  1PSI A;  2ANT I;  1IZ2 A;  3NDA A;  1OVA B;  1ATH A;  4Y3K A;  2PEF A;  4RO9 A;  3DRU A;  4IF8 A;  2PEE A;  3CVM A;  1A7C A;  3DLW A;  3Q03 A;  2H4Q A;  4Y40 A;  2GD4 C;  3CWL A;  1WZ9 A;  1QMN A;  4AU3 B;  2QUG A;  3UT3 A;  4DY7 C;  1TB6 I;  2H4P A;  2VDX A;  2CEO A;  3B9F I;  1DVN A;  1MTP A;  2R9Y A;  5CDZ A;  1DZG L;  2RIV A;  5EI0 A;  1JRR A;  2HIJ I;  1C8O A;  1E05 I;  2BEH I;  3EOX A;  3OZQ A;  1LK6 I;  2WY1 A;  2WXX A;  3LW2 A;  3LE2 A;  3ZHA A;  4KDS A;  4R9I A;  2VH4 A;  3H5C A;  1E04 I;  1JVQ I;  2HI9 A;  2V95 A;  1DZH L;  2VDY A;  3F1S A;  2B4X I;  1IMV A;  1XQJ A;  1R1L I;  1SR5 A;  3DY0 A;  4C49 A;  3Q02 A;  4RSQ A;  1HLE A;  4ROA A;  4ROB A;  7API A;  2DUT A;  1OVA C;  1D5S A;  2HIJ L;  4C41 A;  3EVJ I;  1DVM A;  1ATU A;  2BEH L;  1OYH I;  4DY0 A;  4G8O A;  1B3K A;  3PB1 I;  2ZNH A;  3STO A;  4G8R A;  1LJ5 A;  1XU8 A;  2ARR A;  1XQG A;  4P0F A;  4AJU A;  2WXZ C;  1OC0 A;  2XN6 A;  3FGQ A;  2ZV6 A;  4AFX A;  2XN5 A;  5IO1 A;  1JTI A;  2ARQ A;  1K9O I;  2WY0 C;  1HP7 A;  4EB1 I;  1JJO C;  2XN3 A;  3NDD A;  1BY7 A;  2RIW A;  1C5G A;  1OO8 A;  3PZF A;  5CDX A;  1SEK A;  4AU4 A;  4GA7 A;  4IC0 A;  2D26 A;  1LQ8 A;  2B5T I;  5CE0 A;  3F5N A;  5BRR I;  3NE4 A;  1OVA A;  1AS4 A;  1QMB A;  3NDF A;  4X30 A;  3CWM A;  1M93 B;  2B4X L;  1SNG A;  4CAA A;  3CAA A;  9PAI A;  1E03 I;  1DZG I;  9API A;  1OPH A;  1T1F A; 
#chains in the Genus database with same CATH topology
 2WXW A;  4AU3 A;  4BB2 A;  4P0O A;  4AJT A;  5C98 A;  1BR8 I;  1YXA A;  2WXZ A;  1ANT I;  3VVJ A;  1OYH L;  1KCT A;  3R4L A;  5HGC A;  4AU2 A;  4DTE A;  1F0C A;  1DZH I;  1UHG A;  5INW A;  1NQ9 I;  1JMJ A;  4ZK0 A;  1EZX A;  8API A;  3DRM A;  1DB2 A;  2XN7 A;  4PYW A;  4AQH A;  2WXY C;  3T1P A;  2ACH A;  2OL2 A;  1ATT A;  1JMO A;  3F02 A;  3KCG I;  1AZX I;  1QLP A;  4YIA A;  2H4R A;  2OAY A;  4EB1 L;  4ZK3 A;  1PSI A;  2ANT I;  1IZ2 A;  3NDA A;  1OVA B;  1ATH A;  4Y3K A;  2PEF A;  4RO9 A;  3DRU A;  4IF8 A;  2PEE A;  3CVM A;  1A7C A;  3DLW A;  3Q03 A;  2H4Q A;  4Y40 A;  2GD4 C;  3CWL A;  1WZ9 A;  1QMN A;  4AU3 B;  2QUG A;  3UT3 A;  4DY7 C;  1TB6 I;  2H4P A;  2VDX A;  2CEO A;  3B9F I;  1DVN A;  1MTP A;  2R9Y A;  5CDZ A;  1DZG L;  2RIV A;  5EI0 A;  1JRR A;  2HIJ I;  1C8O A;  1E05 I;  2BEH I;  3EOX A;  3OZQ A;  1LK6 I;  2WY1 A;  2WXX A;  3LW2 A;  3LE2 A;  3ZHA A;  4KDS A;  4R9I A;  2VH4 A;  3H5C A;  1E04 I;  1JVQ I;  2HI9 A;  2V95 A;  1DZH L;  2VDY A;  3F1S A;  2B4X I;  1IMV A;  1XQJ A;  1R1L I;  1SR5 A;  3DY0 A;  4C49 A;  3Q02 A;  4RSQ A;  1HLE A;  4ROA A;  4ROB A;  7API A;  2DUT A;  1OVA C;  1D5S A;  2HIJ L;  4C41 A;  3EVJ I;  1DVM A;  1ATU A;  2BEH L;  1OYH I;  4DY0 A;  4G8O A;  1B3K A;  3PB1 I;  2ZNH A;  3STO A;  4G8R A;  1LJ5 A;  1XU8 A;  2ARR A;  1XQG A;  4P0F A;  4AJU A;  2WXZ C;  1OC0 A;  2XN6 A;  3FGQ A;  2ZV6 A;  4AFX A;  2XN5 A;  5IO1 A;  1JTI A;  2ARQ A;  1K9O I;  2WY0 C;  1HP7 A;  4EB1 I;  1JJO C;  2XN3 A;  3NDD A;  1BY7 A;  2RIW A;  1C5G A;  1OO8 A;  3PZF A;  5CDX A;  1SEK A;  4AU4 A;  4GA7 A;  4IC0 A;  2D26 A;  1LQ8 A;  2B5T I;  5CE0 A;  3F5N A;  5BRR I;  3NE4 A;  1OVA A;  1AS4 A;  1QMB A;  3NDF A;  4X30 A;  3CWM A;  1M93 B;  2B4X L;  1SNG A;  4CAA A;  3CAA A;  9PAI A;  1E03 I;  1DZG I;  9API A;  1OPH A;  1T1F A; 
#chains in the Genus database with same CATH homology
 2WXW A;  4AU3 A;  4BB2 A;  4P0O A;  4AJT A;  5C98 A;  1BR8 I;  1YXA A;  2WXZ A;  1ANT I;  3VVJ A;  1OYH L;  1KCT A;  3R4L A;  5HGC A;  4AU2 A;  4DTE A;  1F0C A;  1DZH I;  1UHG A;  5INW A;  1NQ9 I;  1JMJ A;  4ZK0 A;  1EZX A;  8API A;  3DRM A;  1DB2 A;  2XN7 A;  4PYW A;  4AQH A;  2WXY C;  3T1P A;  2ACH A;  2OL2 A;  1ATT A;  1JMO A;  3F02 A;  3KCG I;  1AZX I;  1QLP A;  4YIA A;  2H4R A;  2OAY A;  4EB1 L;  4ZK3 A;  1PSI A;  2ANT I;  1IZ2 A;  3NDA A;  1OVA B;  1ATH A;  4Y3K A;  2PEF A;  4RO9 A;  3DRU A;  4IF8 A;  2PEE A;  3CVM A;  1A7C A;  3DLW A;  3Q03 A;  2H4Q A;  4Y40 A;  2GD4 C;  3CWL A;  1WZ9 A;  1QMN A;  4AU3 B;  2QUG A;  3UT3 A;  4DY7 C;  1TB6 I;  2H4P A;  2VDX A;  2CEO A;  3B9F I;  1DVN A;  1MTP A;  2R9Y A;  5CDZ A;  1DZG L;  2RIV A;  5EI0 A;  1JRR A;  2HIJ I;  1C8O A;  1E05 I;  2BEH I;  3EOX A;  3OZQ A;  1LK6 I;  2WY1 A;  2WXX A;  3LW2 A;  3LE2 A;  3ZHA A;  4KDS A;  4R9I A;  2VH4 A;  3H5C A;  1E04 I;  1JVQ I;  2HI9 A;  2V95 A;  1DZH L;  2VDY A;  3F1S A;  2B4X I;  1IMV A;  1XQJ A;  1R1L I;  1SR5 A;  3DY0 A;  4C49 A;  3Q02 A;  4RSQ A;  1HLE A;  4ROA A;  4ROB A;  7API A;  2DUT A;  1OVA C;  1D5S A;  2HIJ L;  4C41 A;  3EVJ I;  1DVM A;  1ATU A;  2BEH L;  1OYH I;  4DY0 A;  4G8O A;  1B3K A;  3PB1 I;  2ZNH A;  3STO A;  4G8R A;  1LJ5 A;  1XU8 A;  2ARR A;  1XQG A;  4P0F A;  4AJU A;  2WXZ C;  1OC0 A;  2XN6 A;  3FGQ A;  2ZV6 A;  4AFX A;  2XN5 A;  5IO1 A;  1JTI A;  2ARQ A;  1K9O I;  2WY0 C;  1HP7 A;  4EB1 I;  1JJO C;  2XN3 A;  3NDD A;  1BY7 A;  2RIW A;  1C5G A;  1OO8 A;  3PZF A;  5CDX A;  1SEK A;  4AU4 A;  4GA7 A;  4IC0 A;  2D26 A;  1LQ8 A;  2B5T I;  5CE0 A;  3F5N A;  5BRR I;  3NE4 A;  1OVA A;  1AS4 A;  1QMB A;  3NDF A;  4X30 A;  3CWM A;  1M93 B;  2B4X L;  1SNG A;  4CAA A;  3CAA A;  9PAI A;  1E03 I;  1DZG I;  9API A;  1OPH A;  1T1F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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