4IOAS

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
175
structure length
175
Chain Sequence
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 25
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4ioaS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4ioaS02
4WFBS 4H3SA 4WFAS 1D6KA 5GAHW 2ZJPS 1GTSA 1DFUP 3AIIA 4WCES 4JXZA 3DLLS 4P2BA 1EXDA 1QRTA 3PIPS 5GAGW 1FEUA 2RE8A 4JXXA 1EUQA 4UY88 3J7ZV 1B75A 4WF9S 4IOCS 1QRUA 2RD2A 5GAEW 1QTQA 4JYZA 4IO9S 1EUYA 2HZ7A 5JVGS 4WFNS 5BNZA 1GTRA 5HL7S 1QRSA 4IOAS 5GADW 2ZJQS 3CF5S 2ZJRS 1NYLA 1O0BA 5DM7S 5DM6S 1O0CA 5IZNA 4U67S 3PIOS 5JVHS 1ZJWA
chains in the Genus database with same CATH superfamily
4H3SA 4WFAS 3W2WB 3PO3C 2L5NA 2R7ZC 3KW2A 1Z85A 4JXZA 3DXJA 3EQLA 4OIRA 5IYCC 4XLPA 2PPBA 1K83C 4QIWD 5GAGW 1FEUA 4JXXA 2E2JC 4A3DC 4A3GC 1YNJA 1YNNA 4YFKA 3GTJC 4Y7NC 3HOWC 1Y1VC 4XSZA 3S14C 3S16C 4LK0A 2A69A 2R92C 3FKIC 4WFNS 4V194 5BNZA 1GTRA 2CW0A 4MEYA 4A3MC 3GTOC 3HOVC 4IOAS 4YFNA 2EGVA 3GTGC 4OIOA 3GTLC 2A68A 5IP7C 4OIPA 2ZJQS 2NVTC 2A6EA 1UDXA 3WODA 2ZJRS 4BY7C 5DM6S 4BBSC 1O0CA 3H0GC 4XLNA 1TWGC 2PNWA 2E2HC 5C4XC 2G6GA 1ZJWA 3S1QC 2PI8A 3S15C 4Q5SA 4C3JC 1D6KA 1SMYA 5GAHW 2JA5C 2NVXC 5HQHA 3GTKC 3X1LB 3I4MC 3DLLS 3HOZC 4P2BA 1EXDA 3I4NC 1EUQA 4BBRC 1B75A 4H4KA 4WF9S 4IOCS 4C2MC 3S1RC 2E2IC 3RZOC 2RD2A 4A3FC 4A3KC 1HQMA 3W2VB 4IO9S 3PO2C 2HZ7A 4C3HC 4Q4ZA 2NWAA 5IP9C 4BXXC 2R93C 4L69A 3CZBA 4A3BC 1R9TC 5TMFA 1TWHC 1I6HC 1VHYA 5TMCA 4KN7A 3CF5S 3HKZD 4XSXA 4MQ9A 4ZH4A 5C3EC 2O5IA 4NOIA 2A6HA 3RZDC 3GTMC 3S2DC 4A3CC 1I50C 2O5JA 4LLGA 4BY1C 3S1NC 4GZYA 3S17C 2VUMC 1SFOC 4WCES 4JK1A 2NVQC 3PIPS 2KXYA 2RE8A 2NVYC 4UY88 2PA8D 3J7ZV 2KQ1A 1NXZA 4OIQA 4G7OA 2EGWA 3LYWA 1I3QC 3K7AC 1Y1WC 5JVGS 2PMZD 2BE5A 4LK1A 4QJVA 2PICA 2CX8A 2PJJA 2KPUA 1TWFC 3H3VD 4X6AC 4Y52C 5IYDC 2G5DA 3M4OC 1ZYRA 4C3IC 1O0BA 4MEXA 5DM7S 4YFXA 5IZNA 4U67S 5JVHS 2Y0SD 4A3EC 4WFBS 2AE0X 4E8BA 4KN4A 2ZJPS 1GTSA 1DFUP 3AIIA 2WB1D 4G7HA 1IW7A 2JA7C 1QRTA 2L3UA 4A3LC 5FLMC 2YU9C 1QRUA 4J3CA 5IYBC 1I6VA 4KMUA 4G7ZA 3GTQC 5GAEW 1QTQA 1WCMC 2Z0YA 4JYZA 1EUYA 2B63C 2JA8C 3GTPC 2GAEA 4AYBD 2JA6C 5D4DA 2WAQD 5HL7S 3HOXC 1QRSA 1BDFA 1VHKA 5GADW 4A93C 4LJZA 3HOYC 1NYLA 1V6ZA 1TWAC 5C44C 4A3JC 4OINA 3HOUC 1TWCC 4YG2A 5C4JC 4A3IC 3M3YC 3PIOS 3S1MC 3CQZC 3S2HC
chains in the Genus database with same CATH topology
4WFBS 4H3SA 4WFAS 3W2WB 1D6KA 5GAHW 2ZJPS 1GTSA 1DFUP 3AIIA 4WCES 4JXZA 3X1LB 3DLLS 4P2BA 1EXDA 1QRTA 3PIPS 5GAGW 1FEUA 2RE8A 4JXXA 1EUQA 4UY88 3J7ZV 4H4KA 4WF9S 4IOCS 1QRUA 1B75A 2RD2A 5GAEW 1QTQA 3W2VB 4JYZA 4IO9S 1EUYA 2HZ7A 5JVGS 4WFNS 4V194 5BNZA 1GTRA 5HL7S 1QRSA 4IOAS 5GADW 2ZJQS 3CF5S 1UDXA 2ZJRS 1NYLA 1O0BA 5DM7S 5DM6S 1O0CA 5IZNA 4U67S 3PIOS 5JVHS 1ZJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFB S;  4H3S A;  4WFA S;  1D6K A;  5GAH W;  2ZJP S;  1GTS A;  1DFU P;  3AII A;  4WCE S;  4JXZ A;  3DLL S;  4P2B A;  1EXD A;  1QRT A;  3PIP S;  5GAG W;  1FEU A;  2RE8 A;  4JXX A;  1EUQ A;  4UY8 8;  3J7Z V;  1B75 A;  4WF9 S;  4IOC S;  1QRU A;  2RD2 A;  5GAE W;  1QTQ A;  4JYZ A;  4IO9 S;  1EUY A;  2HZ7 A;  5JVG S;  4WFN S;  5BNZ A;  1GTR A;  5HL7 S;  1QRS A;  4IOA S;  5GAD W;  2ZJQ S;  3CF5 S;  2ZJR S;  1NYL A;  1O0B A;  5DM7 S;  5DM6 S;  1O0C A;  5IZN A;  4U67 S;  3PIO S;  5JVH S;  1ZJW A; 
#chains in the Genus database with same CATH topology
 4H3S A;  4WFA S;  3W2W B;  3PO3 C;  2L5N A;  2R7Z C;  3KW2 A;  1Z85 A;  4JXZ A;  3DXJ A;  3EQL A;  4OIR A;  5IYC C;  4XLP A;  2PPB A;  1K83 C;  4QIW D;  5GAG W;  1FEU A;  4JXX A;  2E2J C;  4A3D C;  4A3G C;  1YNJ A;  1YNN A;  4YFK A;  3GTJ C;  4Y7N C;  3HOW C;  1Y1V C;  4XSZ A;  3S14 C;  3S16 C;  4LK0 A;  2A69 A;  2R92 C;  3FKI C;  4WFN S;  4V19 4;  5BNZ A;  1GTR A;  2CW0 A;  4MEY A;  4A3M C;  3GTO C;  3HOV C;  4IOA S;  4YFN A;  2EGV A;  3GTG C;  4OIO A;  3GTL C;  2A68 A;  5IP7 C;  4OIP A;  2ZJQ S;  2NVT C;  2A6E A;  1UDX A;  3WOD A;  2ZJR S;  4BY7 C;  5DM6 S;  4BBS C;  1O0C A;  3H0G C;  4XLN A;  1TWG C;  2PNW A;  2E2H C;  5C4X C;  2G6G A;  1ZJW A;  3S1Q C;  2PI8 A;  3S15 C;  4Q5S A;  4C3J C;  1D6K A;  1SMY A;  5GAH W;  2JA5 C;  2NVX C;  5HQH A;  3GTK C;  3X1L B;  3I4M C;  3DLL S;  3HOZ C;  4P2B A;  1EXD A;  3I4N C;  1EUQ A;  4BBR C;  1B75 A;  4H4K A;  4WF9 S;  4IOC S;  4C2M C;  3S1R C;  2E2I C;  3RZO C;  2RD2 A;  4A3F C;  4A3K C;  1HQM A;  3W2V B;  4IO9 S;  3PO2 C;  2HZ7 A;  4C3H C;  4Q4Z A;  2NWA A;  5IP9 C;  4BXX C;  2R93 C;  4L69 A;  3CZB A;  4A3B C;  1R9T C;  5TMF A;  1TWH C;  1I6H C;  1VHY A;  5TMC A;  4KN7 A;  3CF5 S;  3HKZ D;  4XSX A;  4MQ9 A;  4ZH4 A;  5C3E C;  2O5I A;  4NOI A;  2A6H A;  3RZD C;  3GTM C;  3S2D C;  4A3C C;  1I50 C;  2O5J A;  4LLG A;  4BY1 C;  3S1N C;  4GZY A;  3S17 C;  2VUM C;  1SFO C;  4WCE S;  4JK1 A;  2NVQ C;  3PIP S;  2KXY A;  2RE8 A;  2NVY C;  4UY8 8;  2PA8 D;  3J7Z V;  2KQ1 A;  1NXZ A;  4OIQ A;  4G7O A;  2EGW A;  3LYW A;  1I3Q C;  3K7A C;  1Y1W C;  5JVG S;  2PMZ D;  2BE5 A;  4LK1 A;  4QJV A;  2PIC A;  2CX8 A;  2PJJ A;  2KPU A;  1TWF C;  3H3V D;  4X6A C;  4Y52 C;  5IYD C;  2G5D A;  3M4O C;  1ZYR A;  4C3I C;  1O0B A;  4MEX A;  5DM7 S;  4YFX A;  5IZN A;  4U67 S;  5JVH S;  2Y0S D;  4A3E C;  4WFB S;  2AE0 X;  4E8B A;  4KN4 A;  2ZJP S;  1GTS A;  1DFU P;  3AII A;  2WB1 D;  4G7H A;  1IW7 A;  2JA7 C;  1QRT A;  2L3U A;  4A3L C;  5FLM C;  2YU9 C;  1QRU A;  4J3C A;  5IYB C;  1I6V A;  4KMU A;  4G7Z A;  3GTQ C;  5GAE W;  1QTQ A;  1WCM C;  2Z0Y A;  4JYZ A;  1EUY A;  2B63 C;  2JA8 C;  3GTP C;  2GAE A;  4AYB D;  2JA6 C;  5D4D A;  2WAQ D;  5HL7 S;  3HOX C;  1QRS A;  1BDF A;  1VHK A;  5GAD W;  4A93 C;  4LJZ A;  3HOY C;  1NYL A;  1V6Z A;  1TWA C;  5C44 C;  4A3J C;  4OIN A;  3HOU C;  1TWC C;  4YG2 A;  5C4J C;  4A3I C;  3M3Y C;  3PIO S;  3S1M C;  3CQZ C;  3S2H C; 
#chains in the Genus database with same CATH homology
 4WFB S;  4H3S A;  4WFA S;  3W2W B;  1D6K A;  5GAH W;  2ZJP S;  1GTS A;  1DFU P;  3AII A;  4WCE S;  4JXZ A;  3X1L B;  3DLL S;  4P2B A;  1EXD A;  1QRT A;  3PIP S;  5GAG W;  1FEU A;  2RE8 A;  4JXX A;  1EUQ A;  4UY8 8;  3J7Z V;  4H4K A;  4WF9 S;  4IOC S;  1QRU A;  1B75 A;  2RD2 A;  5GAE W;  1QTQ A;  3W2V B;  4JYZ A;  4IO9 S;  1EUY A;  2HZ7 A;  5JVG S;  4WFN S;  4V19 4;  5BNZ A;  1GTR A;  5HL7 S;  1QRS A;  4IOA S;  5GAD W;  2ZJQ S;  3CF5 S;  1UDX A;  2ZJR S;  1NYL A;  1O0B A;  5DM7 S;  5DM6 S;  1O0C A;  5IZN A;  4U67 S;  3PIO S;  5JVH S;  1ZJW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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