4IODA

Preliminary structural investigations of a malarial protein secretion system.
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
147
structure length
147
Chain Sequence
GKYLNRTINILNAGKNIAKSYGHNKLKPIHILSALAKSDYGSTLFKENNVNAANLKEYIDIALEQTRAGAPLDNKSKIVNSAEVKETLALAEAAANKYKSPKVDVEHLLSGLSNDELVNEIFNEVYLTDEAIKAILKRKFEKTLVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords Malarial CLP B2 atpase/HSP101 protein
publication title Structural mapping of the ClpB ATPases of Plasmodium falciparum: Targeting protein folding and secretion for antimalarial drug design.
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 64
structure length 147
sequence length 147
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 4iodA00
3WDCA 1R6QA 3FH2A 2Y1RA 5GUIA 1QVRA 3FESA 4HH6A 1R6OA 1MBUA 2Y1QA 1LZWB 1KSFX 5HBNA 4IODA 1K6KA 3ZRJA 3WDDA 3WDEA 1MG9B 3WDBA 1KHYA 3PXGA 1MBXA 4UQWA 4Y0CA 4Y0BA 4IRFA 1R6CX 2K77A 1R6BX 3ZRIA 4HH5A 1MBVA 4P15A
chains in the Genus database with same CATH superfamily
3WDCA 1R6QA 3FH2A 2Y1RA 5GUIA 1QVRA 3FESA 4HH6A 1R6OA 1MBUA 2Y1QA 1LZWB 1KSFX 5HBNA 4IODA 1K6KA 3ZRJA 3WDDA 3WDEA 1MG9B 3WDBA 1KHYA 3PXGA 1MBXA 4UQWA 4Y0CA 4Y0BA 4IRFA 1R6CX 2K77A 1R6BX 3ZRIA 4HH5A 1MBVA 4P15A
chains in the Genus database with same CATH topology
3WDCA 1R6QA 3FH2A 2Y1RA 5GUIA 1QVRA 3FESA 4HH6A 1R6OA 1MBUA 2Y1QA 1LZWB 1KSFX 5HBNA 4IODA 1K6KA 3ZRJA 3WDDA 3WDEA 1MG9B 3WDBA 1KHYA 3PXGA 1MBXA 4UQWA 4Y0CA 4Y0BA 4IRFA 1R6CX 2K77A 1R6BX 3ZRIA 4HH5A 1MBVA 4P15A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WDC A;  1R6Q A;  3FH2 A;  2Y1R A;  5GUI A;  1QVR A;  3FES A;  4HH6 A;  1R6O A;  1MBU A;  2Y1Q A;  1LZW B;  1KSF X;  5HBN A;  4IOD A;  1K6K A;  3ZRJ A;  3WDD A;  3WDE A;  1MG9 B;  3WDB A;  1KHY A;  3PXG A;  1MBX A;  4UQW A;  4Y0C A;  4Y0B A;  4IRF A;  1R6C X;  2K77 A;  1R6B X;  3ZRI A;  4HH5 A;  1MBV A;  4P15 A; 
#chains in the Genus database with same CATH topology
 3WDC A;  1R6Q A;  3FH2 A;  2Y1R A;  5GUI A;  1QVR A;  3FES A;  4HH6 A;  1R6O A;  1MBU A;  2Y1Q A;  1LZW B;  1KSF X;  5HBN A;  4IOD A;  1K6K A;  3ZRJ A;  3WDD A;  3WDE A;  1MG9 B;  3WDB A;  1KHY A;  3PXG A;  1MBX A;  4UQW A;  4Y0C A;  4Y0B A;  4IRF A;  1R6C X;  2K77 A;  1R6B X;  3ZRI A;  4HH5 A;  1MBV A;  4P15 A; 
#chains in the Genus database with same CATH homology
 3WDC A;  1R6Q A;  3FH2 A;  2Y1R A;  5GUI A;  1QVR A;  3FES A;  4HH6 A;  1R6O A;  1MBU A;  2Y1Q A;  1LZW B;  1KSF X;  5HBN A;  4IOD A;  1K6K A;  3ZRJ A;  3WDD A;  3WDE A;  1MG9 B;  3WDB A;  1KHY A;  3PXG A;  1MBX A;  4UQW A;  4Y0C A;  4Y0B A;  4IRF A;  1R6C X;  2K77 A;  1R6B X;  3ZRI A;  4HH5 A;  1MBV A;  4P15 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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