4IXJA

The structure of pilj, a type iv pilin from clostridium difficile
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
237
structure length
224
Chain Sequence
RNIEKSKAVTCLSNRENIKTQIVIAMAEESSKDKNEVIKEVLENKDGKYFETEPKCKSGGIYSATFDKVYVTCTKHPDGIEMARDIHQSMKDLIASFAQDPSIIPGASKGNDDFRKYLLDNKYKNGWPTIPDEFKAKYGLSKDTLYIQPYAYNPTKSDATVVVFANNKTGGNWYTSLVYDYDEGRWYKGKNGISVAGRSWDVDTDSVKSVKTEIHSKEGWGPLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords Fimbrial protein (Pilin)
publication title Structure of Clostridium difficile PilJ Exhibits Unprecedented Divergence from Known Type IV Pilins.
pubmed doi rcsb
source organism Clostridium difficile
total genus 77
structure length 224
sequence length 237
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18223 PilJ_C Pili PilJ C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.80 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 Pantoate--beta-alanine Ligase; Chain: A,domain 2 4ixjA01
3.30.1690.20 Alpha Beta 2-Layer Sandwich TcpA-like pilin TcpA-like pilin 4ixjA02
4IXJA
chains in the Genus database with same CATH superfamily
4G5YA 4EF6A 3IODA 3AG5A 3CFAL 1V8FA 3IVGA 1N2EA 3Q10A 3Q12A 3CFIA 3CFHL 3COYA 2I52A 3IVCA 3COWA 2A54A 1IHOA 2A7XA 3HL6A 4MUNA 4DDMA 2LMEA 3INNA 4MUEA 5KWVA 2A56A 1Q5FA 3VORA 4MUFA 4MUIA 2G5ZA 3IMEA 2G3DA 2X3FA 4DDKA 5HG0A 1N2HA 3AG6A 1N2OA 3IMGA 1N2IA 1N2GA 2A88A 3UK2A 3COVA 3CI0K 2IECA 3LF4A 1UFVA 4FZJA 4MQ6A 4DDHA 3IOCA 2GR7A 5EXCA 3HRVA 3S0TA 3N8HA 3COZA 3CFFL 3IOBA 2GR8A 2RETA 4MUKA 2A52A 3FHVA 2OGFA 4IXJA 3CI0I 4G5FA 1ZWTA 3MXTA 4MULA 2EJCA 3IOEA 2A53A 5G2FA 4BHRA 5BW0B 3IUBA 3MUEA 4EFKA 2A86A 3IMCA 4DE5A 4MUGA 2G2SA 1MOPA 4MUHA 3IVXA 3UA0A 1OQVA 3FHUA 2G16A 2A84A 3QTTA 2GW4A 3ISJA 4MUJA 3UY4A 1N2BA 3EMOA 2A50A 3LE8A 3IUEA 1N2JA
chains in the Genus database with same CATH topology
4G5YA 4EF6A 3IODA 3AG5A 3CFAL 1V8FA 3IVGA 1N2EA 3Q10A 3Q12A 3CFHL 3COYA 3IVCA 3COWA 2A54A 4MUNA 1IHOA 3HL6A 2A7XA 4DDMA 3INNA 4MUEA 5KWVA 2A56A 1Q5FA 3VORA 4MUFA 4MUIA 2G5ZA 3IMEA 2G3DA 2X3FA 4DDKA 5HG0A 1N2HA 3AG6A 1N2OA 3IMGA 1N2IA 1N2GA 2A88A 3UK2A 3COVA 3LF4A 1UFVA 4FZJA 4MQ6A 4DDHA 3IOCA 5EXCA 3HRVA 3S0TA 3N8HA 3COZA 3CFFL 3IOBA 4MUKA 2A52A 3FHVA 4IXJA 4G5FA 1ZWTA 3MXTA 4MULA 2EJCA 3IOEA 2A53A 5G2FA 4BHRA 3IUBA 3MUEA 4EFKA 2A86A 3IMCA 4DE5A 4MUGA 2G2SA 4MUHA 1MOPA 3UA0A 3IVXA 1OQVA 3FHUA 2G16A 2A84A 3QTTA 2GW4A 3ISJA 4MUJA 3UY4A 1N2BA 2A50A 3LE8A 3IUEA 1N2JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IXJ A; 
#chains in the Genus database with same CATH topology
 4G5Y A;  4EF6 A;  3IOD A;  3AG5 A;  3CFA L;  1V8F A;  3IVG A;  1N2E A;  3Q10 A;  3Q12 A;  3CFI A;  3CFH L;  3COY A;  2I52 A;  3IVC A;  3COW A;  2A54 A;  1IHO A;  2A7X A;  3HL6 A;  4MUN A;  4DDM A;  2LME A;  3INN A;  4MUE A;  5KWV A;  2A56 A;  1Q5F A;  3VOR A;  4MUF A;  4MUI A;  2G5Z A;  3IME A;  2G3D A;  2X3F A;  4DDK A;  5HG0 A;  1N2H A;  3AG6 A;  1N2O A;  3IMG A;  1N2I A;  1N2G A;  2A88 A;  3UK2 A;  3COV A;  3CI0 K;  2IEC A;  3LF4 A;  1UFV A;  4FZJ A;  4MQ6 A;  4DDH A;  3IOC A;  2GR7 A;  5EXC A;  3HRV A;  3S0T A;  3N8H A;  3COZ A;  3CFF L;  3IOB A;  2GR8 A;  2RET A;  4MUK A;  2A52 A;  3FHV A;  2OGF A;  4IXJ A;  3CI0 I;  4G5F A;  1ZWT A;  3MXT A;  4MUL A;  2EJC A;  3IOE A;  2A53 A;  5G2F A;  4BHR A;  5BW0 B;  3IUB A;  3MUE A;  4EFK A;  2A86 A;  3IMC A;  4DE5 A;  4MUG A;  2G2S A;  1MOP A;  4MUH A;  3IVX A;  3UA0 A;  1OQV A;  3FHU A;  2G16 A;  2A84 A;  3QTT A;  2GW4 A;  3ISJ A;  4MUJ A;  3UY4 A;  1N2B A;  3EMO A;  2A50 A;  3LE8 A;  3IUE A;  1N2J A; 
#chains in the Genus database with same CATH homology
 4G5Y A;  4EF6 A;  3IOD A;  3AG5 A;  3CFA L;  1V8F A;  3IVG A;  1N2E A;  3Q10 A;  3Q12 A;  3CFH L;  3COY A;  3IVC A;  3COW A;  2A54 A;  4MUN A;  1IHO A;  3HL6 A;  2A7X A;  4DDM A;  3INN A;  4MUE A;  5KWV A;  2A56 A;  1Q5F A;  3VOR A;  4MUF A;  4MUI A;  2G5Z A;  3IME A;  2G3D A;  2X3F A;  4DDK A;  5HG0 A;  1N2H A;  3AG6 A;  1N2O A;  3IMG A;  1N2I A;  1N2G A;  2A88 A;  3UK2 A;  3COV A;  3LF4 A;  1UFV A;  4FZJ A;  4MQ6 A;  4DDH A;  3IOC A;  5EXC A;  3HRV A;  3S0T A;  3N8H A;  3COZ A;  3CFF L;  3IOB A;  4MUK A;  2A52 A;  3FHV A;  4IXJ A;  4G5F A;  1ZWT A;  3MXT A;  4MUL A;  2EJC A;  3IOE A;  2A53 A;  5G2F A;  4BHR A;  3IUB A;  3MUE A;  4EFK A;  2A86 A;  3IMC A;  4DE5 A;  4MUG A;  2G2S A;  4MUH A;  1MOP A;  3UA0 A;  3IVX A;  1OQV A;  3FHU A;  2G16 A;  2A84 A;  3QTT A;  2GW4 A;  3ISJ A;  4MUJ A;  3UY4 A;  1N2B A;  2A50 A;  3LE8 A;  3IUE A;  1N2J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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