4IZWA

The e41l mutant of the amidase from nesterenkonia sp. an1 showing covalent addition of the acetamide moiety of fluoroacetamide at the active site cysteine
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
271
structure length
262
Chain Sequence
GLVPRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPLLFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPDADYLQDRRAELHRNWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Amidase
publication title Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
rcsb
source organism Nesterenkonia sp. 10004
total genus 82
structure length 262
sequence length 271
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2013-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 4izwA00
1UF5A 3IW3A 2VHIA 3WUYA 4F4HA 3KI8A 5H8KA 4LF0A 1UF7A 3SYTA 5KHAA 2E2LA 2PLQA 4HG5A 1J31A 1F89A 3SDBA 5H8LA 4IZVA 2DYUA 3SZGA 2UXYA 4CYYA 1ERZA 4IZWA 1UF4A 3HKXA 4GYNA 3N05A 1UF8A 4KZFA 1FO6A 2GGLA 4CYFA 5JQNA 2E2KA 4IZSA 3ILVA 3KLCA 4HGDA 4GYLA 4H5UA 4CYGA 5H8JA 3IVZA 1EMSA 2DYVA 5H8IA 3SEZA 4IZUA 4IZTA 3SEQA 2E11A 2W1VA 2GGKA 2VHHA 3DLAA 4HG3A 3P8KA
chains in the Genus database with same CATH superfamily
1UF5A 3IW3A 2VHIA 3WUYA 4F4HA 3KI8A 5H8KA 4LF0A 1UF7A 3SYTA 5KHAA 2E2LA 2PLQA 4HG5A 1J31A 1F89A 3SDBA 5H8LA 4IZVA 2DYUA 3SZGA 2UXYA 4CYYA 1ERZA 4IZWA 1UF4A 3HKXA 4GYNA 3N05A 1UF8A 4KZFA 1FO6A 2GGLA 4CYFA 5JQNA 2E2KA 4IZSA 3ILVA 3KLCA 4HGDA 4GYLA 4H5UA 4CYGA 5H8JA 3IVZA 1EMSA 2DYVA 5H8IA 3SEZA 4IZUA 4IZTA 3SEQA 2E11A 2W1VA 2GGKA 2VHHA 3DLAA 4HG3A 3P8KA
chains in the Genus database with same CATH topology
1UF5A 3IW3A 2VHIA 3WUYA 4F4HA 3KI8A 5H8KA 4LF0A 1UF7A 3SYTA 5KHAA 2E2LA 2PLQA 4HG5A 1J31A 1F89A 3SDBA 5H8LA 4IZVA 2DYUA 3SZGA 2UXYA 4CYYA 1ERZA 4IZWA 1UF4A 3HKXA 4GYNA 3N05A 1UF8A 4KZFA 1FO6A 2GGLA 4CYFA 5JQNA 2E2KA 4IZSA 3ILVA 3KLCA 4HGDA 4GYLA 4H5UA 4CYGA 5H8JA 3IVZA 1EMSA 2DYVA 5H8IA 3SEZA 4IZUA 4IZTA 3SEQA 2E11A 2W1VA 2GGKA 2VHHA 3DLAA 4HG3A 3P8KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UF5 A;  3IW3 A;  2VHI A;  3WUY A;  4F4H A;  3KI8 A;  5H8K A;  4LF0 A;  1UF7 A;  3SYT A;  5KHA A;  2E2L A;  2PLQ A;  4HG5 A;  1J31 A;  1F89 A;  3SDB A;  5H8L A;  4IZV A;  2DYU A;  3SZG A;  2UXY A;  4CYY A;  1ERZ A;  4IZW A;  1UF4 A;  3HKX A;  4GYN A;  3N05 A;  1UF8 A;  4KZF A;  1FO6 A;  2GGL A;  4CYF A;  5JQN A;  2E2K A;  4IZS A;  3ILV A;  3KLC A;  4HGD A;  4GYL A;  4H5U A;  4CYG A;  5H8J A;  3IVZ A;  1EMS A;  2DYV A;  5H8I A;  3SEZ A;  4IZU A;  4IZT A;  3SEQ A;  2E11 A;  2W1V A;  2GGK A;  2VHH A;  3DLA A;  4HG3 A;  3P8K A; 
#chains in the Genus database with same CATH topology
 1UF5 A;  3IW3 A;  2VHI A;  3WUY A;  4F4H A;  3KI8 A;  5H8K A;  4LF0 A;  1UF7 A;  3SYT A;  5KHA A;  2E2L A;  2PLQ A;  4HG5 A;  1J31 A;  1F89 A;  3SDB A;  5H8L A;  4IZV A;  2DYU A;  3SZG A;  2UXY A;  4CYY A;  1ERZ A;  4IZW A;  1UF4 A;  3HKX A;  4GYN A;  3N05 A;  1UF8 A;  4KZF A;  1FO6 A;  2GGL A;  4CYF A;  5JQN A;  2E2K A;  4IZS A;  3ILV A;  3KLC A;  4HGD A;  4GYL A;  4H5U A;  4CYG A;  5H8J A;  3IVZ A;  1EMS A;  2DYV A;  5H8I A;  3SEZ A;  4IZU A;  4IZT A;  3SEQ A;  2E11 A;  2W1V A;  2GGK A;  2VHH A;  3DLA A;  4HG3 A;  3P8K A; 
#chains in the Genus database with same CATH homology
 1UF5 A;  3IW3 A;  2VHI A;  3WUY A;  4F4H A;  3KI8 A;  5H8K A;  4LF0 A;  1UF7 A;  3SYT A;  5KHA A;  2E2L A;  2PLQ A;  4HG5 A;  1J31 A;  1F89 A;  3SDB A;  5H8L A;  4IZV A;  2DYU A;  3SZG A;  2UXY A;  4CYY A;  1ERZ A;  4IZW A;  1UF4 A;  3HKX A;  4GYN A;  3N05 A;  1UF8 A;  4KZF A;  1FO6 A;  2GGL A;  4CYF A;  5JQN A;  2E2K A;  4IZS A;  3ILV A;  3KLC A;  4HGD A;  4GYL A;  4H5U A;  4CYG A;  5H8J A;  3IVZ A;  1EMS A;  2DYV A;  5H8I A;  3SEZ A;  4IZU A;  4IZT A;  3SEQ A;  2E11 A;  2W1V A;  2GGK A;  2VHH A;  3DLA A;  4HG3 A;  3P8K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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