4J3CA

Crystal structure of 16s ribosomal rna methyltransferase rsme
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
Knots found
sequence length
239
structure length
232
Chain Sequence
MQRLFIENALHAGAKHEATREQFNVLRLGEGSSLLVFNGRDGEWRAEIAMPSRQAVLVAVEQTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQGKIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGSQNPLPILEGIAERRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILRADTAAVAAMAVIQATLGDWR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Ribosomal RNA small subunit methyltransferase E
publication title Crystal structure of 16S ribosomal RNA methyltransferase RsmE
rcsb
source organism Sinorhizobium meliloti
total genus 55
structure length 232
sequence length 239
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.193: 16S rRNA (uracil(1498)-N(3))-methyltransferase.
pdb deposition date 2013-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 4j3cA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4j3cA02
1IPAA 4CNEA 4YQJA 4JALA 1GZ0A 3O7BA 5FAIA 3OIIA 1O6DA 4YQAA 4YVJA 2V3KA 4MCCA 4YVKA 4RG1A 3GYQA 1X7OA 4E8BA 2CX8A 2V3JA 4YQLA 1J85A 5GMBA 3KW2A 1V2XA 2O3AA 1VHYA 4YQ4A 4YQ1A 1OY5A 4FAKA 3AI9X 5D9FA 4YQ0A 4YQCA 3QUVA 4YVGA 3DCMX 4KDZA 1ZJRA 2I6DA 4H3ZA 1NS5A 1UAKA 4YQ7A 4YQQA 4YPZA 3AXZA 4YQIA 4CNGA 4JAKA 5GMCA 1MXIA 1UALA 2Z0YA 2NWAA 4YQTA 2QWVA 1X7PA 4X3MA 4YQ6A 4YQNA 4PZKA 1VHKA 1NXZA 4YQ3A 1UAJA 3IC6A 3AIAA 4YQ9A 4YQBA 2EGWA 1TO0A 4KGNA 1K3RA 3N4KA 3N4JA 4CNFA 4L69A 4MCDA 4YVHA 2YY8A 3BBDA 3KNUA 3OINA 4YQ5A 3ILKA 4MCBA 3KY7A 4YQ8A 4CNDA 4J3CA 1UAMA 4YQPA 5GM8A 3OIJA 1VH0A 4H3YA 4YPXA 4YQOA 3BBEA 3ONPA 4YVIA 4YPWA 2HA8A 2QMMA 1P9PA 4YQGA 4YQSA 4YQRA 3NK6A 4YPYA 1Z85A 3IEFA 4YQKA 3E5YA 2EGVA 3KTYA 4XBOA 4X3LA 4YQ2A 4YQDA 3BBHA 1V6ZA 3NK7A 4IG6A 3L8UA 5CO4A
chains in the Genus database with same CATH superfamily
1IPAA 4CNEA 2RD2A 4YQJA 4JALA 1GZ0A 3O7BA 5FAIA 4H3SA 3OIIA 1O6DA 1O0BA 4YQAA 4YVJA 2V3KA 2G5DA 4MCCA 4YVKA 4RG1A 4WF9S 5GAGW 1X7OA 3GYQA 5DM7S 4E8BA 2CX8A 2V3JA 4YQLA 4JWJA 3W2VB 1J85A 5GMBA 3KW2A 1V2XA 2O3AA 1VHYA 4YQ4A 4WFAS 4UY88 2RE8A 4YQ1A 1OY5A 4FAKA 3AI9X 5D9FA 1EUQA 4YQ0A 2G6GA 4YQCA 3QUVA 4YVGA 3DCMX 5GADW 1GTSA 4JXXA 4KDZA 2GAEA 1DFUP 1ZJRA 2I6DA 1NS5A 1UAKA 4FMWA 4H3ZA 4IO9S 4YQ7A 4YQQA 4YPZA 1EUYA 3AXZA 4YQIA 4CNGA 3PIOS 4V194 4JAKA 5JVGS 5GMCA 1MXIA 1UALA 3CZBA 4U67S 1GTRA 2Z0YA 2NWAA 4YQTA 2QWVA 1X7PA 2ZJPS 4X3MA 4YQ6A 4YQNA 4PZKA 1VHKA 5HL7S 1NXZA 4YQ3A 4WFBS 1UAJA 3IC6A 4WFNS 3AIAA 1UDXA 2PICA 3DLLS 1QTQA 4YQBA 4YQ9A 2EGWA 2AE0X 2ZJQS 4IOCS 1TO0A 4KGNA 1K3RA 4JWFA 2HZ7A 5BNZA 3N4KA 3CF5S 3N4JA 4CNFA 4L69A 1O0CA 2PJJA 1ZJWA 5DM6S 2YY8A 4MCDA 1B75A 3BBDA 3KNUA 4YVHA 3OINA 2ZJRS 3X1LB 2PI8A 4YQ5A 3ILKA 4JWGA 4MCBA 3KY7A 4YQ8A 4CNDA 5JVHS 3AIIA 4J3CA 1UAMA 1EXDA 4YQPA 1D6KA 4JXZA 5GM8A 4IOAS 1QRSA 3W2WB 4JYZA 1QRUA 3OIJA 1QRTA 1VH0A 4H3YA 4YPXA 4YQOA 3BBEA 3ONPA 4P2BA 4YVIA 2PNWA 5IZNA 4YPWA 3J7ZV 2HA8A 2QMMA 1P9PA 4YQGA 4YQSA 5GAEW 4WCES 4YQRA 4H4KA 3NK6A 4YPYA 1Z85A 1FEUA 3PIPS 3IEFA 4YQKA 3E5YA 5GAHW 2EGVA 3KTYA 4XBOA 4JWHA 4X3LA 4YQ2A 4YQDA 3BBHA 1V6ZA 3NK7A 1NYLA 4IG6A 3L8UA 5CO4A
chains in the Genus database with same CATH topology
1IPAA 4CNEA 4YQJA 4JALA 1GZ0A 3O7BA 5FAIA 3OIIA 1O6DA 4YQAA 4YVJA 2V3KA 4MCCA 4YVKA 4RG1A 3GYQA 1X7OA 4E8BA 2CX8A 2V3JA 4YQLA 4JWJA 1J85A 5GMBA 3KW2A 1V2XA 2O3AA 1VHYA 4YQ4A 4YQ1A 1OY5A 4FAKA 3AI9X 5D9FA 4YQ0A 4YQCA 3QUVA 4YVGA 3DCMX 4KDZA 1ZJRA 2I6DA 4H3ZA 4FMWA 1NS5A 1UAKA 4YQ7A 4YQQA 4YPZA 3AXZA 4YQIA 4CNGA 4JAKA 5GMCA 1MXIA 1UALA 2Z0YA 2NWAA 4YQTA 2QWVA 1X7PA 4X3MA 4YQ6A 4YQNA 4PZKA 1VHKA 1NXZA 4YQ3A 1UAJA 3IC6A 3AIAA 4YQ9A 4YQBA 2EGWA 1TO0A 4KGNA 1K3RA 4JWFA 3N4KA 3N4JA 4CNFA 4L69A 4MCDA 4YVHA 2YY8A 3BBDA 3KNUA 3OINA 4YQ5A 3ILKA 4JWGA 4MCBA 3KY7A 4YQ8A 4CNDA 4J3CA 1UAMA 4YQPA 5GM8A 3OIJA 1VH0A 4H3YA 4YPXA 4YQOA 3BBEA 3ONPA 4YVIA 4YPWA 2HA8A 2QMMA 1P9PA 4YQGA 4YQSA 4YQRA 3NK6A 4YPYA 1Z85A 3IEFA 4YQKA 3E5YA 2EGVA 3KTYA 4XBOA 4JWHA 4X3LA 4YQ2A 4YQDA 3BBHA 1V6ZA 3NK7A 4IG6A 3L8UA 5CO4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IPA A;  4CNE A;  4YQJ A;  4JAL A;  1GZ0 A;  3O7B A;  5FAI A;  3OII A;  1O6D A;  4YQA A;  4YVJ A;  2V3K A;  4MCC A;  4YVK A;  4RG1 A;  3GYQ A;  1X7O A;  4E8B A;  2CX8 A;  2V3J A;  4YQL A;  1J85 A;  5GMB A;  3KW2 A;  1V2X A;  2O3A A;  1VHY A;  4YQ4 A;  4YQ1 A;  1OY5 A;  4FAK A;  3AI9 X;  5D9F A;  4YQ0 A;  4YQC A;  3QUV A;  4YVG A;  3DCM X;  4KDZ A;  1ZJR A;  2I6D A;  4H3Z A;  1NS5 A;  1UAK A;  4YQ7 A;  4YQQ A;  4YPZ A;  3AXZ A;  4YQI A;  4CNG A;  4JAK A;  5GMC A;  1MXI A;  1UAL A;  2Z0Y A;  2NWA A;  4YQT A;  2QWV A;  1X7P A;  4X3M A;  4YQ6 A;  4YQN A;  4PZK A;  1VHK A;  1NXZ A;  4YQ3 A;  1UAJ A;  3IC6 A;  3AIA A;  4YQ9 A;  4YQB A;  2EGW A;  1TO0 A;  4KGN A;  1K3R A;  3N4K A;  3N4J A;  4CNF A;  4L69 A;  4MCD A;  4YVH A;  2YY8 A;  3BBD A;  3KNU A;  3OIN A;  4YQ5 A;  3ILK A;  4MCB A;  3KY7 A;  4YQ8 A;  4CND A;  4J3C A;  1UAM A;  4YQP A;  5GM8 A;  3OIJ A;  1VH0 A;  4H3Y A;  4YPX A;  4YQO A;  3BBE A;  3ONP A;  4YVI A;  4YPW A;  2HA8 A;  2QMM A;  1P9P A;  4YQG A;  4YQS A;  4YQR A;  3NK6 A;  4YPY A;  1Z85 A;  3IEF A;  4YQK A;  3E5Y A;  2EGV A;  3KTY A;  4XBO A;  4X3L A;  4YQ2 A;  4YQD A;  3BBH A;  1V6Z A;  3NK7 A;  4IG6 A;  3L8U A;  5CO4 A; 
#chains in the Genus database with same CATH topology
 1IPA A;  4CNE A;  2RD2 A;  4YQJ A;  4JAL A;  1GZ0 A;  3O7B A;  5FAI A;  4H3S A;  3OII A;  1O6D A;  1O0B A;  4YQA A;  4YVJ A;  2V3K A;  2G5D A;  4MCC A;  4YVK A;  4RG1 A;  4WF9 S;  5GAG W;  1X7O A;  3GYQ A;  5DM7 S;  4E8B A;  2CX8 A;  2V3J A;  4YQL A;  4JWJ A;  3W2V B;  1J85 A;  5GMB A;  3KW2 A;  1V2X A;  2O3A A;  1VHY A;  4YQ4 A;  4WFA S;  4UY8 8;  2RE8 A;  4YQ1 A;  1OY5 A;  4FAK A;  3AI9 X;  5D9F A;  1EUQ A;  4YQ0 A;  2G6G A;  4YQC A;  3QUV A;  4YVG A;  3DCM X;  5GAD W;  1GTS A;  4JXX A;  4KDZ A;  2GAE A;  1DFU P;  1ZJR A;  2I6D A;  1NS5 A;  1UAK A;  4FMW A;  4H3Z A;  4IO9 S;  4YQ7 A;  4YQQ A;  4YPZ A;  1EUY A;  3AXZ A;  4YQI A;  4CNG A;  3PIO S;  4V19 4;  4JAK A;  5JVG S;  5GMC A;  1MXI A;  1UAL A;  3CZB A;  4U67 S;  1GTR A;  2Z0Y A;  2NWA A;  4YQT A;  2QWV A;  1X7P A;  2ZJP S;  4X3M A;  4YQ6 A;  4YQN A;  4PZK A;  1VHK A;  5HL7 S;  1NXZ A;  4YQ3 A;  4WFB S;  1UAJ A;  3IC6 A;  4WFN S;  3AIA A;  1UDX A;  2PIC A;  3DLL S;  1QTQ A;  4YQB A;  4YQ9 A;  2EGW A;  2AE0 X;  2ZJQ S;  4IOC S;  1TO0 A;  4KGN A;  1K3R A;  4JWF A;  2HZ7 A;  5BNZ A;  3N4K A;  3CF5 S;  3N4J A;  4CNF A;  4L69 A;  1O0C A;  2PJJ A;  1ZJW A;  5DM6 S;  2YY8 A;  4MCD A;  1B75 A;  3BBD A;  3KNU A;  4YVH A;  3OIN A;  2ZJR S;  3X1L B;  2PI8 A;  4YQ5 A;  3ILK A;  4JWG A;  4MCB A;  3KY7 A;  4YQ8 A;  4CND A;  5JVH S;  3AII A;  4J3C A;  1UAM A;  1EXD A;  4YQP A;  1D6K A;  4JXZ A;  5GM8 A;  4IOA S;  1QRS A;  3W2W B;  4JYZ A;  1QRU A;  3OIJ A;  1QRT A;  1VH0 A;  4H3Y A;  4YPX A;  4YQO A;  3BBE A;  3ONP A;  4P2B A;  4YVI A;  2PNW A;  5IZN A;  4YPW A;  3J7Z V;  2HA8 A;  2QMM A;  1P9P A;  4YQG A;  4YQS A;  5GAE W;  4WCE S;  4YQR A;  4H4K A;  3NK6 A;  4YPY A;  1Z85 A;  1FEU A;  3PIP S;  3IEF A;  4YQK A;  3E5Y A;  5GAH W;  2EGV A;  3KTY A;  4XBO A;  4JWH A;  4X3L A;  4YQ2 A;  4YQD A;  3BBH A;  1V6Z A;  3NK7 A;  1NYL A;  4IG6 A;  3L8U A;  5CO4 A; 
#chains in the Genus database with same CATH homology
 1IPA A;  4CNE A;  4YQJ A;  4JAL A;  1GZ0 A;  3O7B A;  5FAI A;  3OII A;  1O6D A;  4YQA A;  4YVJ A;  2V3K A;  4MCC A;  4YVK A;  4RG1 A;  3GYQ A;  1X7O A;  4E8B A;  2CX8 A;  2V3J A;  4YQL A;  4JWJ A;  1J85 A;  5GMB A;  3KW2 A;  1V2X A;  2O3A A;  1VHY A;  4YQ4 A;  4YQ1 A;  1OY5 A;  4FAK A;  3AI9 X;  5D9F A;  4YQ0 A;  4YQC A;  3QUV A;  4YVG A;  3DCM X;  4KDZ A;  1ZJR A;  2I6D A;  4H3Z A;  4FMW A;  1NS5 A;  1UAK A;  4YQ7 A;  4YQQ A;  4YPZ A;  3AXZ A;  4YQI A;  4CNG A;  4JAK A;  5GMC A;  1MXI A;  1UAL A;  2Z0Y A;  2NWA A;  4YQT A;  2QWV A;  1X7P A;  4X3M A;  4YQ6 A;  4YQN A;  4PZK A;  1VHK A;  1NXZ A;  4YQ3 A;  1UAJ A;  3IC6 A;  3AIA A;  4YQ9 A;  4YQB A;  2EGW A;  1TO0 A;  4KGN A;  1K3R A;  4JWF A;  3N4K A;  3N4J A;  4CNF A;  4L69 A;  4MCD A;  4YVH A;  2YY8 A;  3BBD A;  3KNU A;  3OIN A;  4YQ5 A;  3ILK A;  4JWG A;  4MCB A;  3KY7 A;  4YQ8 A;  4CND A;  4J3C A;  1UAM A;  4YQP A;  5GM8 A;  3OIJ A;  1VH0 A;  4H3Y A;  4YPX A;  4YQO A;  3BBE A;  3ONP A;  4YVI A;  4YPW A;  2HA8 A;  2QMM A;  1P9P A;  4YQG A;  4YQS A;  4YQR A;  3NK6 A;  4YPY A;  1Z85 A;  3IEF A;  4YQK A;  3E5Y A;  2EGV A;  3KTY A;  4XBO A;  4JWH A;  4X3L A;  4YQ2 A;  4YQD A;  3BBH A;  1V6Z A;  3NK7 A;  4IG6 A;  3L8U A;  5CO4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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