4JGKA

Crystal structure of the evolved variant of the computationally designed serine hydrolase, northeast structural genomics consortium (nesg) target or275
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
164
structure length
164
Chain Sequence
ARIRHVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFTGVGAWVGGLPAEAVYRVMLEEIKKAPDTLEVTGVHGTEKSAEAFRRAGLEHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords evolved variant of a designed serine hydrolase
publication title Crystal Structure of the evolved variant of the computationally designed serine hydrolase, Northeast Structural Genomics Consortium (NESG) Target OR275
rcsb
source organism Synthetic construct
total genus 54
structure length 164
sequence length 164
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-03-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 4jgkA00
3IJ3A 4D86A 3GQEA 3EWRA 4X2TA 2X47A 4IQYA 3JZTA 2ACFA 3IIFA 4TU0A 5FSVA 3Q71A 4ABKA 3Q6ZA 2DX6A 3EJGA 4ZX8A 1GYTA 4R7MA 3EW5A 3H8EA 1LCPA 2VRIA 3JRUA 2XD7A 3SIJA 4JGKA 1ZR3A 3KR5A 5E3BA 1YD9A 1LAPA 3KZWA 4JCAA 3EWOA 1LAMA 5CB5A 5HOLA 3EWPA 4ZX9A 2EEEA 2J9AA 4J5RA 4UMLA 5HIHA 3ETIA 4ETKA 5CB3A 5FSZA 4J5SA 1BLLE 5CBMA 2BFRA 3H8FA 5FSXA 4GVVA 3EKEA 3PEIA 4KSIA 4JVVA 4ESSA 5FSYA 3KR4A 5AILA 1NJRA 1HJZA 3KQZA 1BPMA 4ETJA 2AFCA 5D8NA 4KYBA 4ZI6A 1VHUA 3SIHA 2BFQA 4K0CA 3IIDA 1LANA 4ZY1A 1ZR5A 3VFQA 1TY8A 3T8WA 2FAVA 4R6TA 1TXZA 3H8GA 4K3NA 3GQOA 4R76A 2FXKA 2L8RA 1BPNA 5DUSA 2LGRA 3GPQA 3V45A 2EWBA 2FG1A 3SIIA 4JLLA 5CMSA 3SIGA 3GPGA 4J4ZA 3EJFA 4GVWA 3V2BA 3EWQA 3GPOA 5FSUA 1SPVA 4GUAA 4ZYQA 3KQXA 4ZY2A 4J5QA 4ABLA 4ZY0A
chains in the Genus database with same CATH superfamily
3IJ3A 4D86A 3GQEA 3EWRA 4X2TA 2X47A 4IQYA 3JZTA 2ACFA 3IIFA 2JZDA 4TU0A 5FSVA 3Q71A 4ABKA 3Q6ZA 2DX6A 3EJGA 4ZX8A 2RNKA 1GYTA 4R7MA 3EW5A 3H8EA 1LCPA 2VRIA 3JRUA 2XD7A 3SIJA 4JGKA 2JZEA 1ZR3A 3KR5A 5E3BA 1YD9A 1LAPA 3KZWA 2JZFA 4JCAA 3EWOA 1LAMA 5CB5A 5HOLA 2KQVA 3EWPA 4ZX9A 2EEEA 2J9AA 4J5RA 4UMLA 5HIHA 3ETIA 4ETKA 5CB3A 5FSZA 4J5SA 1BLLE 5CBMA 2BFRA 3H8FA 5FSXA 4GVVA 3EKEA 3PEIA 4KSIA 4JVVA 4ESSA 5FSYA 2WCTA 3KR4A 5AILA 1NJRA 1HJZA 3KQZA 1BPMA 4ETJA 2AFCA 5D8NA 4KYBA 4ZI6A 1VHUA 3SIHA 2BFQA 4K0CA 3IIDA 1LANA 4ZY1A 1ZR5A 3VFQA 1TY8A 3T8WA 2FAVA 4R6TA 1TXZA 3H8GA 4K3NA 3GQOA 4R76A 2FXKA 2L8RA 1BPNA 5DUSA 2LGRA 3GPQA 3V45A 2EWBA 2FG1A 3SIIA 4JLLA 5CMSA 3SIGA 3GPGA 4J4ZA 3EJFA 4GVWA 3V2BA 3EWQA 3GPOA 5FSUA 1SPVA 4GUAA 2W2GA 4ZYQA 3KQXA 4ZY2A 4J5QA 4ABLA 4ZY0A
chains in the Genus database with same CATH topology
3IJ3A 4D86A 3GQEA 3EWRA 4X2TA 2X47A 4IQYA 3JZTA 2ACFA 3IIFA 4TU0A 5FSVA 3Q71A 4ABKA 3Q6ZA 2DX6A 3EJGA 4ZX8A 1GYTA 4R7MA 3EW5A 3H8EA 1LCPA 2VRIA 3JRUA 2XD7A 3SIJA 4JGKA 1ZR3A 3KR5A 5E3BA 1YD9A 1LAPA 3KZWA 4JCAA 3EWOA 1LAMA 5CB5A 5HOLA 3EWPA 4ZX9A 2EEEA 2J9AA 4J5RA 4UMLA 5HIHA 3ETIA 4ETKA 5CB3A 5FSZA 4J5SA 1BLLE 5CBMA 2BFRA 3H8FA 5FSXA 4GVVA 3EKEA 3PEIA 4KSIA 4JVVA 4ESSA 5FSYA 3KR4A 5AILA 1NJRA 1HJZA 3KQZA 1BPMA 4ETJA 2AFCA 5D8NA 4KYBA 4ZI6A 1VHUA 3SIHA 2BFQA 4K0CA 3IIDA 1LANA 4ZY1A 1ZR5A 3VFQA 1TY8A 3T8WA 2FAVA 4R6TA 1TXZA 3H8GA 4K3NA 3GQOA 4R76A 2FXKA 2L8RA 1BPNA 5DUSA 2LGRA 3GPQA 3V45A 2EWBA 2FG1A 3SIIA 4JLLA 5CMSA 3SIGA 3GPGA 4J4ZA 3EJFA 4GVWA 3V2BA 3EWQA 3GPOA 5FSUA 1SPVA 4GUAA 4ZYQA 3KQXA 4ZY2A 4J5QA 4ABLA 4ZY0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IJ3 A;  4D86 A;  3GQE A;  3EWR A;  4X2T A;  2X47 A;  4IQY A;  3JZT A;  2ACF A;  3IIF A;  4TU0 A;  5FSV A;  3Q71 A;  4ABK A;  3Q6Z A;  2DX6 A;  3EJG A;  4ZX8 A;  1GYT A;  4R7M A;  3EW5 A;  3H8E A;  1LCP A;  2VRI A;  3JRU A;  2XD7 A;  3SIJ A;  4JGK A;  1ZR3 A;  3KR5 A;  5E3B A;  1YD9 A;  1LAP A;  3KZW A;  4JCA A;  3EWO A;  1LAM A;  5CB5 A;  5HOL A;  3EWP A;  4ZX9 A;  2EEE A;  2J9A A;  4J5R A;  4UML A;  5HIH A;  3ETI A;  4ETK A;  5CB3 A;  5FSZ A;  4J5S A;  1BLL E;  5CBM A;  2BFR A;  3H8F A;  5FSX A;  4GVV A;  3EKE A;  3PEI A;  4KSI A;  4JVV A;  4ESS A;  5FSY A;  3KR4 A;  5AIL A;  1NJR A;  1HJZ A;  3KQZ A;  1BPM A;  4ETJ A;  2AFC A;  5D8N A;  4KYB A;  4ZI6 A;  1VHU A;  3SIH A;  2BFQ A;  4K0C A;  3IID A;  1LAN A;  4ZY1 A;  1ZR5 A;  3VFQ A;  1TY8 A;  3T8W A;  2FAV A;  4R6T A;  1TXZ A;  3H8G A;  4K3N A;  3GQO A;  4R76 A;  2FXK A;  2L8R A;  1BPN A;  5DUS A;  2LGR A;  3GPQ A;  3V45 A;  2EWB A;  2FG1 A;  3SII A;  4JLL A;  5CMS A;  3SIG A;  3GPG A;  4J4Z A;  3EJF A;  4GVW A;  3V2B A;  3EWQ A;  3GPO A;  5FSU A;  1SPV A;  4GUA A;  4ZYQ A;  3KQX A;  4ZY2 A;  4J5Q A;  4ABL A;  4ZY0 A; 
#chains in the Genus database with same CATH topology
 3IJ3 A;  4D86 A;  3GQE A;  3EWR A;  4X2T A;  2X47 A;  4IQY A;  3JZT A;  2ACF A;  3IIF A;  2JZD A;  4TU0 A;  5FSV A;  3Q71 A;  4ABK A;  3Q6Z A;  2DX6 A;  3EJG A;  4ZX8 A;  2RNK A;  1GYT A;  4R7M A;  3EW5 A;  3H8E A;  1LCP A;  2VRI A;  3JRU A;  2XD7 A;  3SIJ A;  4JGK A;  2JZE A;  1ZR3 A;  3KR5 A;  5E3B A;  1YD9 A;  1LAP A;  3KZW A;  2JZF A;  4JCA A;  3EWO A;  1LAM A;  5CB5 A;  5HOL A;  2KQV A;  3EWP A;  4ZX9 A;  2EEE A;  2J9A A;  4J5R A;  4UML A;  5HIH A;  3ETI A;  4ETK A;  5CB3 A;  5FSZ A;  4J5S A;  1BLL E;  5CBM A;  2BFR A;  3H8F A;  5FSX A;  4GVV A;  3EKE A;  3PEI A;  4KSI A;  4JVV A;  4ESS A;  5FSY A;  2WCT A;  3KR4 A;  5AIL A;  1NJR A;  1HJZ A;  3KQZ A;  1BPM A;  4ETJ A;  2AFC A;  5D8N A;  4KYB A;  4ZI6 A;  1VHU A;  3SIH A;  2BFQ A;  4K0C A;  3IID A;  1LAN A;  4ZY1 A;  1ZR5 A;  3VFQ A;  1TY8 A;  3T8W A;  2FAV A;  4R6T A;  1TXZ A;  3H8G A;  4K3N A;  3GQO A;  4R76 A;  2FXK A;  2L8R A;  1BPN A;  5DUS A;  2LGR A;  3GPQ A;  3V45 A;  2EWB A;  2FG1 A;  3SII A;  4JLL A;  5CMS A;  3SIG A;  3GPG A;  4J4Z A;  3EJF A;  4GVW A;  3V2B A;  3EWQ A;  3GPO A;  5FSU A;  1SPV A;  4GUA A;  2W2G A;  4ZYQ A;  3KQX A;  4ZY2 A;  4J5Q A;  4ABL A;  4ZY0 A; 
#chains in the Genus database with same CATH homology
 3IJ3 A;  4D86 A;  3GQE A;  3EWR A;  4X2T A;  2X47 A;  4IQY A;  3JZT A;  2ACF A;  3IIF A;  4TU0 A;  5FSV A;  3Q71 A;  4ABK A;  3Q6Z A;  2DX6 A;  3EJG A;  4ZX8 A;  1GYT A;  4R7M A;  3EW5 A;  3H8E A;  1LCP A;  2VRI A;  3JRU A;  2XD7 A;  3SIJ A;  4JGK A;  1ZR3 A;  3KR5 A;  5E3B A;  1YD9 A;  1LAP A;  3KZW A;  4JCA A;  3EWO A;  1LAM A;  5CB5 A;  5HOL A;  3EWP A;  4ZX9 A;  2EEE A;  2J9A A;  4J5R A;  4UML A;  5HIH A;  3ETI A;  4ETK A;  5CB3 A;  5FSZ A;  4J5S A;  1BLL E;  5CBM A;  2BFR A;  3H8F A;  5FSX A;  4GVV A;  3EKE A;  3PEI A;  4KSI A;  4JVV A;  4ESS A;  5FSY A;  3KR4 A;  5AIL A;  1NJR A;  1HJZ A;  3KQZ A;  1BPM A;  4ETJ A;  2AFC A;  5D8N A;  4KYB A;  4ZI6 A;  1VHU A;  3SIH A;  2BFQ A;  4K0C A;  3IID A;  1LAN A;  4ZY1 A;  1ZR5 A;  3VFQ A;  1TY8 A;  3T8W A;  2FAV A;  4R6T A;  1TXZ A;  3H8G A;  4K3N A;  3GQO A;  4R76 A;  2FXK A;  2L8R A;  1BPN A;  5DUS A;  2LGR A;  3GPQ A;  3V45 A;  2EWB A;  2FG1 A;  3SII A;  4JLL A;  5CMS A;  3SIG A;  3GPG A;  4J4Z A;  3EJF A;  4GVW A;  3V2B A;  3EWQ A;  3GPO A;  5FSU A;  1SPV A;  4GUA A;  4ZYQ A;  3KQX A;  4ZY2 A;  4J5Q A;  4ABL A;  4ZY0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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