4JIWD

C1882 paar-repeat protein from escherichia coli in complex with a vgrg-like beta-helix that is based on a fragment of t4 gp5
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
93
structure length
93
Chain Sequence
PLAAKLTDKGTQHDGYYETVITAGSSTVFIDGLPAARQEDPLTPHDKPKHPPHPRKIARGSSTVFIDGLPAARTGDAIDCGGVVIGGGTVNIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/protein binding
molecule keywords Tail-associated lysozyme
publication title PAAR-repeat proteins sharpen and diversify the type VI secretion system spike.
pubmed doi rcsb
source organism Enterobacteria phage t4
total genus 19
structure length 93
sequence length 93
chains with identical sequence H, L, P
ec nomenclature
pdb deposition date 2013-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF05488 PAAR_motif PAAR motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.60 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 4jiwD00
4KU0D 4JIWD 4JIVD
chains in the Genus database with same CATH superfamily
2JQIA 2Q5FA 4L02A 5E50A 1DEVA 1WV3A 1K2MA 1R21A 1Y3HA 3UOTA 1K3QA 3GMJA 2AFFA 3V7UA 4D9VA 3T5PA 1J4QA 2QVLA 4DY6A 3I6WA 1ZOQA 4EGXA 2LC1A 3OUNA 3I6UA 3V8QA 5JEMA 1MZKA 5DHQA 5EJHA 5DHPA 5EJFA 1UHTA 2I2DA 1U7FA 3S40A 1U0TA 4JIWD 1U7VB 1YT5A 2BRFA 3PO8A 3VA1A 1FHRA 1U7FB 1KHXA 1QU5A 3VA4A 1G3GA 1GXCA 3MDBA 4JONA 3VZCA 2P1RA 3KT9A 2JKDA 4G2SA 5EJGA 3UNMA 4EJQA 3UV0A 1WLNA 1J2FA 2EH0A 2KB4A 1K2NA 3V7YA 3HUFA 5JEKA 3V80A 3V8NA 1YJMA 2I2FA 1MK2A 1UJXA 2I2BA 3VPYA 1J4PA 2JGRA 2BONA 2XT9B 5DHTA 1J4LA 1Z0SA 1J4OA 1DD1A 4A0EA 2W3OA 3VZDA 1G6GA 2JPEA 1MJSA 1Y3IA 1YGSA 3GQSA 3POAA 5JELA 3UN0A 5DHUA 2XXSA 3PFNA 3HUEA 4WERA 2I29A 2KKLA 5EJIA 1K3JA 1LGPA 3ELVA 1KHUA 1Z0UA 2FEZA 3DITA 1Z0ZA 2FF4A 4WRRA 5JEJA 1QWTA 4A4YA 3V8MA 5JERA 2I2CA 3AFOA 3I0NA 1LGQA 1SUWA 2I2AA 3FM8A 1U0RA 5C4VA 2G1LA 3VZBA 3V8RA 3UNNA 3V7WA 3HX1A 1J4KA 3ELSA 2A0TA 2JQLA 4H87A 1YJ5C 1G88A 3I0MA 3V8PA 1DMZA 3UMZA 1K3NA 1MR1A 5BVIA 2KFUA 2AN1A 2CSWA 2JQJA 4HAOA 1U7VA 4KU0D 1FHQA 3DSHA 5DHRA 2QV7A 4QCJA 4JIVD 4V24A 5DHSA 4R9PA 2I1WA 5JEOA 3A77A 2KB3A 5A8IA 5DJOA 2PIEA
chains in the Genus database with same CATH topology
2JQIA 4L02A 5E50A 1DEVA 1WV3A 1K2MA 1R21A 3UOTA 1K3QA 3GMJA 2AFFA 4D9VA 3T5PA 1J4QA 2QVLA 3I6WA 1ZOQA 4EGXA 2LC1A 3OUNA 3I6UA 5JEMA 1MZKA 1UHTA 1U7FA 3S40A 4JIWD 1U7VB 2BRFA 3PO8A 3VA1A 1FHRA 1U7FB 1KHXA 1QU5A 3VA4A 1G3GA 1GXCA 3MDBA 4JONA 3VZCA 2P1RA 3KT9A 2JKDA 4G2SA 3UNMA 4EJQA 3UV0A 1WLNA 1J2FA 2EH0A 2KB4A 1K2NA 3HUFA 5JEKA 1YJMA 1MK2A 1UJXA 3VPYA 1J4PA 2JGRA 2BONA 2XT9B 1J4LA 1J4OA 1DD1A 4A0EA 2W3OA 3VZDA 1G6GA 2JPEA 1MJSA 1YGSA 3GQSA 3POAA 5JELA 3UN0A 2XXSA 3HUEA 4WERA 2KKLA 1K3JA 1LGPA 3ELVA 1KHUA 2FEZA 3DITA 2FF4A 4WRRA 5JEJA 1QWTA 4A4YA 5JERA 3I0NA 1LGQA 5C4VA 3FM8A 2G1LA 3VZBA 3UNNA 3HX1A 1J4KA 3ELSA 2A0TA 2JQLA 4H87A 1YJ5C 1G88A 3I0MA 1DMZA 1K3NA 3UMZA 1MR1A 5BVIA 2KFUA 2CSWA 2JQJA 1U7VA 4KU0D 1FHQA 3DSHA 2QV7A 4QCJA 4JIVD 4V24A 4R9PA 5JEOA 3A77A 2KB3A 5A8IA 5DJOA 2PIEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KU0 D;  4JIW D;  4JIV D; 
#chains in the Genus database with same CATH topology
 2JQI A;  2Q5F A;  4L02 A;  5E50 A;  1DEV A;  1WV3 A;  1K2M A;  1R21 A;  1Y3H A;  3UOT A;  1K3Q A;  3GMJ A;  2AFF A;  3V7U A;  4D9V A;  3T5P A;  1J4Q A;  2QVL A;  4DY6 A;  3I6W A;  1ZOQ A;  4EGX A;  2LC1 A;  3OUN A;  3I6U A;  3V8Q A;  5JEM A;  1MZK A;  5DHQ A;  5EJH A;  5DHP A;  5EJF A;  1UHT A;  2I2D A;  1U7F A;  3S40 A;  1U0T A;  4JIW D;  1U7V B;  1YT5 A;  2BRF A;  3PO8 A;  3VA1 A;  1FHR A;  1U7F B;  1KHX A;  1QU5 A;  3VA4 A;  1G3G A;  1GXC A;  3MDB A;  4JON A;  3VZC A;  2P1R A;  3KT9 A;  2JKD A;  4G2S A;  5EJG A;  3UNM A;  4EJQ A;  3UV0 A;  1WLN A;  1J2F A;  2EH0 A;  2KB4 A;  1K2N A;  3V7Y A;  3HUF A;  5JEK A;  3V80 A;  3V8N A;  1YJM A;  2I2F A;  1MK2 A;  1UJX A;  2I2B A;  3VPY A;  1J4P A;  2JGR A;  2BON A;  2XT9 B;  5DHT A;  1J4L A;  1Z0S A;  1J4O A;  1DD1 A;  4A0E A;  2W3O A;  3VZD A;  1G6G A;  2JPE A;  1MJS A;  1Y3I A;  1YGS A;  3GQS A;  3POA A;  5JEL A;  3UN0 A;  5DHU A;  2XXS A;  3PFN A;  3HUE A;  4WER A;  2I29 A;  2KKL A;  5EJI A;  1K3J A;  1LGP A;  3ELV A;  1KHU A;  1Z0U A;  2FEZ A;  3DIT A;  1Z0Z A;  2FF4 A;  4WRR A;  5JEJ A;  1QWT A;  4A4Y A;  3V8M A;  5JER A;  2I2C A;  3AFO A;  3I0N A;  1LGQ A;  1SUW A;  2I2A A;  3FM8 A;  1U0R A;  5C4V A;  2G1L A;  3VZB A;  3V8R A;  3UNN A;  3V7W A;  3HX1 A;  1J4K A;  3ELS A;  2A0T A;  2JQL A;  4H87 A;  1YJ5 C;  1G88 A;  3I0M A;  3V8P A;  1DMZ A;  3UMZ A;  1K3N A;  1MR1 A;  5BVI A;  2KFU A;  2AN1 A;  2CSW A;  2JQJ A;  4HAO A;  1U7V A;  4KU0 D;  1FHQ A;  3DSH A;  5DHR A;  2QV7 A;  4QCJ A;  4JIV D;  4V24 A;  5DHS A;  4R9P A;  2I1W A;  5JEO A;  3A77 A;  2KB3 A;  5A8I A;  5DJO A;  2PIE A; 
#chains in the Genus database with same CATH homology
 2JQI A;  4L02 A;  5E50 A;  1DEV A;  1WV3 A;  1K2M A;  1R21 A;  3UOT A;  1K3Q A;  3GMJ A;  2AFF A;  4D9V A;  3T5P A;  1J4Q A;  2QVL A;  3I6W A;  1ZOQ A;  4EGX A;  2LC1 A;  3OUN A;  3I6U A;  5JEM A;  1MZK A;  1UHT A;  1U7F A;  3S40 A;  4JIW D;  1U7V B;  2BRF A;  3PO8 A;  3VA1 A;  1FHR A;  1U7F B;  1KHX A;  1QU5 A;  3VA4 A;  1G3G A;  1GXC A;  3MDB A;  4JON A;  3VZC A;  2P1R A;  3KT9 A;  2JKD A;  4G2S A;  3UNM A;  4EJQ A;  3UV0 A;  1WLN A;  1J2F A;  2EH0 A;  2KB4 A;  1K2N A;  3HUF A;  5JEK A;  1YJM A;  1MK2 A;  1UJX A;  3VPY A;  1J4P A;  2JGR A;  2BON A;  2XT9 B;  1J4L A;  1J4O A;  1DD1 A;  4A0E A;  2W3O A;  3VZD A;  1G6G A;  2JPE A;  1MJS A;  1YGS A;  3GQS A;  3POA A;  5JEL A;  3UN0 A;  2XXS A;  3HUE A;  4WER A;  2KKL A;  1K3J A;  1LGP A;  3ELV A;  1KHU A;  2FEZ A;  3DIT A;  2FF4 A;  4WRR A;  5JEJ A;  1QWT A;  4A4Y A;  5JER A;  3I0N A;  1LGQ A;  5C4V A;  3FM8 A;  2G1L A;  3VZB A;  3UNN A;  3HX1 A;  1J4K A;  3ELS A;  2A0T A;  2JQL A;  4H87 A;  1YJ5 C;  1G88 A;  3I0M A;  1DMZ A;  1K3N A;  3UMZ A;  1MR1 A;  5BVI A;  2KFU A;  2CSW A;  2JQJ A;  1U7V A;  4KU0 D;  1FHQ A;  3DSH A;  2QV7 A;  4QCJ A;  4JIV D;  4V24 A;  4R9P A;  5JEO A;  3A77 A;  2KB3 A;  5A8I A;  5DJO A;  2PIE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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