4JN5A

Crystal structures of the first condensation domain of the cda synthetase
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
446
structure length
435
Chain Sequence
NSSVRHGLTSAQHEVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDGGRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAGVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Biosynthetic protein
molecule keywords CDA peptide synthetase I
publication title Crystal Structures of the First Condensation Domain of CDA Synthetase Suggest Conformational Changes during the Synthetic Cycle of Nonribosomal Peptide Synthetases.
pubmed doi rcsb
source organism Streptomyces coelicolor
total genus 141
structure length 435
sequence length 446
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4jn5A01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 4jn5A02
1PD5A 1QCAA 4HVMA 3FP0A 5KJSA 1E2OA 2II3A 5KJWA 1CIAA 4KECA 1XMDA 2I9DA 1DPCA 1NOCB 2RKTA 2XR7A 4N72A 3B2SA 4JN5A 3MAEA 2CLAA 3U9BA 2XHGA 4G2MA 3FOTA 5KJVA 4KE4A 1Q23A 5T3EA 5DUAA 2II5A 1EAEA 1C4TA 2E1VA 1DPBA 3CLAA 1CLAA 1EAAA 1EABA 1SCZA 1DPDA 1XL7A 2E1UA 2IHWA 2ZBAA 4G0BA 2BGHA 1EADA 4JN3A 2JGPA 1L5AA 1EAFA 4G22A 2E1TA 3U9FA 1XL8A 1EACA 5DU9A 5FANA 1Q9JA 2RKVA 3B30A 5FALA 4CLAA 5KJUA 2II4A 1XMCA 3L60A 2VSQA 5KJTA
chains in the Genus database with same CATH superfamily
1PD5A 1QCAA 3FP0A 5KJSA 1E2OA 5KJWA 1CIAA 2I9DA 2XR7A 4N72A 4JN5A 4KE4A 5T3EA 2FYOA 2H4TA 2II5A 1EAEA 1NDFA 2DEBA 2E1UA 1L5AA 4EP9A 1T7QA 1XL8A 1NDIA 5KJUA 2H3WA 1XMCA 4HVMA 1NDBA 2RKTA 2FY2A 2CLAA 3U9BA 2XHGA 3FOTA 1T7OA 2H3PA 2E1VA 3CLAA 1DPBA 1CLAA 1XL7A 1T1UA 2BGHA 1EADA 2JGPA 4G22A 2E1TA 5FANA 1NM8A 2II4A 2FY5A 2II3A 4KECA 3MAEA 4G2MA 5KJVA 2H3UA 1Q23A 5DUAA 1EAAA 1SCZA 2ZBAA 1EAFA 1T7NA 3U9FA 5DU9A 3B30A 2VSQA 1S5OA 1XMDA 2FY4A 1DPCA 1NOCB 3B2SA 1C4TA 4G0BA 2IHWA 1EABA 2FY3A 1DPDA 2RCUA 4EPHA 4EYWA 4JN3A 1EACA 2FW3A 1Q9JA 2RKVA 5FALA 4CLAA 1Q6XA 3L60A 5KJTA
chains in the Genus database with same CATH topology
1PD5A 1QCAA 3FP0A 5KJSA 1E2OA 5KJWA 1CIAA 2I9DA 2XR7A 4N72A 4JN5A 4KE4A 5T3EA 2FYOA 2H4TA 2II5A 1EAEA 1NDFA 2DEBA 2E1UA 1L5AA 4EP9A 1T7QA 1XL8A 1NDIA 5KJUA 2H3WA 1XMCA 4HVMA 1NDBA 2RKTA 2FY2A 2CLAA 3U9BA 2XHGA 3FOTA 1T7OA 2H3PA 2E1VA 3CLAA 1DPBA 1CLAA 1XL7A 1T1UA 2BGHA 1EADA 2JGPA 4G22A 2E1TA 5FANA 1NM8A 2II4A 2FY5A 2II3A 4KECA 3MAEA 4G2MA 5KJVA 2H3UA 1Q23A 5DUAA 1EAAA 1SCZA 2ZBAA 1EAFA 1T7NA 3U9FA 5DU9A 3B30A 2VSQA 1S5OA 1XMDA 2FY4A 1DPCA 1NOCB 3B2SA 1C4TA 4G0BA 2IHWA 1EABA 2FY3A 1DPDA 2RCUA 4EPHA 4EYWA 4JN3A 1EACA 2FW3A 1Q9JA 2RKVA 5FALA 4CLAA 1Q6XA 3L60A 5KJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PD5 A;  1QCA A;  4HVM A;  3FP0 A;  5KJS A;  1E2O A;  2II3 A;  5KJW A;  1CIA A;  4KEC A;  1XMD A;  2I9D A;  1DPC A;  1NOC B;  2RKT A;  2XR7 A;  4N72 A;  3B2S A;  4JN5 A;  3MAE A;  2CLA A;  3U9B A;  2XHG A;  4G2M A;  3FOT A;  5KJV A;  4KE4 A;  1Q23 A;  5T3E A;  5DUA A;  2II5 A;  1EAE A;  1C4T A;  2E1V A;  1DPB A;  3CLA A;  1CLA A;  1EAA A;  1EAB A;  1SCZ A;  1DPD A;  1XL7 A;  2E1U A;  2IHW A;  2ZBA A;  4G0B A;  2BGH A;  1EAD A;  4JN3 A;  2JGP A;  1L5A A;  1EAF A;  4G22 A;  2E1T A;  3U9F A;  1XL8 A;  1EAC A;  5DU9 A;  5FAN A;  1Q9J A;  2RKV A;  3B30 A;  5FAL A;  4CLA A;  5KJU A;  2II4 A;  1XMC A;  3L60 A;  2VSQ A;  5KJT A; 
#chains in the Genus database with same CATH topology
 1PD5 A;  1QCA A;  3FP0 A;  5KJS A;  1E2O A;  5KJW A;  1CIA A;  2I9D A;  2XR7 A;  4N72 A;  4JN5 A;  4KE4 A;  5T3E A;  2FYO A;  2H4T A;  2II5 A;  1EAE A;  1NDF A;  2DEB A;  2E1U A;  1L5A A;  4EP9 A;  1T7Q A;  1XL8 A;  1NDI A;  5KJU A;  2H3W A;  1XMC A;  4HVM A;  1NDB A;  2RKT A;  2FY2 A;  2CLA A;  3U9B A;  2XHG A;  3FOT A;  1T7O A;  2H3P A;  2E1V A;  3CLA A;  1DPB A;  1CLA A;  1XL7 A;  1T1U A;  2BGH A;  1EAD A;  2JGP A;  4G22 A;  2E1T A;  5FAN A;  1NM8 A;  2II4 A;  2FY5 A;  2II3 A;  4KEC A;  3MAE A;  4G2M A;  5KJV A;  2H3U A;  1Q23 A;  5DUA A;  1EAA A;  1SCZ A;  2ZBA A;  1EAF A;  1T7N A;  3U9F A;  5DU9 A;  3B30 A;  2VSQ A;  1S5O A;  1XMD A;  2FY4 A;  1DPC A;  1NOC B;  3B2S A;  1C4T A;  4G0B A;  2IHW A;  1EAB A;  2FY3 A;  1DPD A;  2RCU A;  4EPH A;  4EYW A;  4JN3 A;  1EAC A;  2FW3 A;  1Q9J A;  2RKV A;  5FAL A;  4CLA A;  1Q6X A;  3L60 A;  5KJT A; 
#chains in the Genus database with same CATH homology
 1PD5 A;  1QCA A;  3FP0 A;  5KJS A;  1E2O A;  5KJW A;  1CIA A;  2I9D A;  2XR7 A;  4N72 A;  4JN5 A;  4KE4 A;  5T3E A;  2FYO A;  2H4T A;  2II5 A;  1EAE A;  1NDF A;  2DEB A;  2E1U A;  1L5A A;  4EP9 A;  1T7Q A;  1XL8 A;  1NDI A;  5KJU A;  2H3W A;  1XMC A;  4HVM A;  1NDB A;  2RKT A;  2FY2 A;  2CLA A;  3U9B A;  2XHG A;  3FOT A;  1T7O A;  2H3P A;  2E1V A;  3CLA A;  1DPB A;  1CLA A;  1XL7 A;  1T1U A;  2BGH A;  1EAD A;  2JGP A;  4G22 A;  2E1T A;  5FAN A;  1NM8 A;  2II4 A;  2FY5 A;  2II3 A;  4KEC A;  3MAE A;  4G2M A;  5KJV A;  2H3U A;  1Q23 A;  5DUA A;  1EAA A;  1SCZ A;  2ZBA A;  1EAF A;  1T7N A;  3U9F A;  5DU9 A;  3B30 A;  2VSQ A;  1S5O A;  1XMD A;  2FY4 A;  1DPC A;  1NOC B;  3B2S A;  1C4T A;  4G0B A;  2IHW A;  1EAB A;  2FY3 A;  1DPD A;  2RCU A;  4EPH A;  4EYW A;  4JN3 A;  1EAC A;  2FW3 A;  1Q9J A;  2RKV A;  5FAL A;  4CLA A;  1Q6X A;  3L60 A;  5KJT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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