4JP6A

High resolution structure of a papaya barwin-like protein
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
122
structure length
122
Chain Sequence
ESASNVRATYHFYNAQQNGWDLRKVSAYCATWDADKPYSWRSKYGWTAFCGPVGPHGRAACGKCLRVTNTKTRAETTVRIVDQCSNGGLDLDWSVFKKLDTDGSGYLRGHLIVNYQFVNCGN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords papaya barwin-like protein
publication title High-resolution structure of a papaya plant-defence barwin-like protein solved by in-house sulfur-SAD phasing.
pubmed doi rcsb
total genus 42
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2013-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 4jp6A00
4JJOA 5GLXA 4FG2A 3SUJA 3X2GA 3X2MA 1WC2A 5GM9A 4JP7A 2AE0X 1L8FA 2PI8A 4FFTA 3X2KA 4AVRA 2KQAA 3ENGA 2G5DA 4FG4A 4JS7A 5GLYA 4ZM7A 3X2OA 2PICA 3X2JA 2GAEA 2ENGA 4L48A 3M3GA 4JP6A 1BW3A 5H4UA 4FERA 3D30A 3SUMA 3SUKA 1HD5A 3X2HA 4JCWA 2G6GA 1OA9A 1BW4A 2PNWA 3X2PA 2BH0A 3X2LA 2PJJA 4ENGA 2HCZX 3X2NA 1N10A 3SULA 1OA7A 3X2IA 3CZBA
chains in the Genus database with same CATH superfamily
1CR5A 1PYUB 1UHEA 3O5AA 5DYGA 2JA7A 3SUJA 2JA6A 1TMOA 2WB1A 3HU1A 2A6ED 5DYIA 2PJHB 2AE0X 1L8FA 1Y5IA 4FFTA 4GA6A 4AVRA 1S3SA 2G5DA 4FG4A 5GLYA 1DMSA 1R9TA 5T5ID 1YNND 2GAEA 1TWCA 2ENGA 4QIWA 2VPXA 4AONB 3M3GA 1PQEA 3GTKA 3GTOA 4AYBA 3SUMA 1BW3A 1PT0A 2PMZA 2VUMA 2B63A 1G8JA 1YNJD 4KDLA 3DMRA 1YLEA 5FTLA 4KO8A 1WCMA 2VPWA 2A6HD 1SIWA 3HU2A 1Q16A 2BE5D 1QDNA 1ZYRD 4AAYA 2HCZX 2JIMA 2E2IA 2NVXA 1Y1WA 3X2GA 1AW8B 5C18A 2NYAA 3PLXB 3X2KA 1ZC1A 2EEOB 1TWHA 2PI8A 3IR7A 1WLFA 3QWZA 3ENGA 3ML1A 1E18A 2YU9A 1FDOA 4JS7A 1PT1A 4ZM7A 3X2JA 2JIPA 4DMRA 4CRYG 2DMRA 3GTGA 1E61A 1IW7D 1QCSA 4NOHA 3QC8A 1HD5A 1E32A 3FKIA 3QQ7A 4KDIA 2JA5A 1OGYA 2E2HA 3X2HA 4C2MA 1PYQA 1AA6A 2CW0D 2NVYA 1DMRA 3TIWA 3X2PA 2BH0A 2JIOA 3H0GA 3IR6A 4KLNA 4ENGA 2R7ZA 2O5JD 1CZ5A 1TWGA 1BW4A 2KI8A 3TM7B 1I3QA 1PPYA 5FTNA 3IR5A 5GLXA 3X2MA 5FTKA 4CS0A 2R93A 5GM9A 2NAPA 1SMYD 3GTLA 1Y4ZA 3X2OA 2PICA 1E60A 4AZDA 2V3VA 4CRZA 1KQFA 3HKZA 1SFOA 4L48A 1TWFA 3GTMA 5H4UA 4FERA 2V45A 3D30A 2Y0SA 3QQ8A 1UHDA 5B6CA 4JCWA 3CQZA 4RV0A 4D7ZB 1VC3B 2VPZA 2PJJA 1E5VA 1K83A 3GTQA 3SULA 1R7RA 3CZBA 2JIQA 4JJOA 4FG2A 1I50A 2R92A 1WC2A 1G8KA 2YUJA 3OUGA 5EPPA 4JP7A 5C1BA 1EU1A 1Y1VA 3GTPA 2KQAA 1H5NA 5FTJA 1FDIA 1KQGA 1PQFA 2JIRA 3HU3A 1H0HA 4JP6A 2A68D 3CF2A 5T5MD 2E7ZA 3SUKA 3X2IA 2VPYA 2A69D 1CZ4A 4AOKB 2C45A 2G6GA 1OA9A 2IV2X 4KODA 2PNWA 5FTMA 1PQHA 1R27A 5GLFA 3X2LA 4GA5A 2WAQA 1N10A 3X2NA 3GTJA 1OA7A 1TWAA
chains in the Genus database with same CATH topology
4JJOA 5GLXA 4FG2A 3SUJA 3X2GA 3X2MA 1WC2A 5GM9A 4JP7A 2AE0X 1L8FA 2PI8A 4FFTA 3X2KA 4AVRA 2KQAA 3ENGA 2G5DA 4FG4A 4JS7A 5GLYA 4ZM7A 3X2OA 2PICA 3X2JA 2GAEA 2ENGA 4L48A 3M3GA 4JP6A 1BW3A 5H4UA 4FERA 3D30A 3SUMA 3SUKA 1HD5A 3X2HA 4JCWA 2G6GA 1OA9A 1BW4A 2PNWA 3X2PA 2BH0A 3X2LA 2PJJA 4ENGA 2HCZX 3X2NA 1N10A 3SULA 1OA7A 3X2IA 3CZBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JJO A;  5GLX A;  4FG2 A;  3SUJ A;  3X2G A;  3X2M A;  1WC2 A;  5GM9 A;  4JP7 A;  2AE0 X;  1L8F A;  2PI8 A;  4FFT A;  3X2K A;  4AVR A;  2KQA A;  3ENG A;  2G5D A;  4FG4 A;  4JS7 A;  5GLY A;  4ZM7 A;  3X2O A;  2PIC A;  3X2J A;  2GAE A;  2ENG A;  4L48 A;  3M3G A;  4JP6 A;  1BW3 A;  5H4U A;  4FER A;  3D30 A;  3SUM A;  3SUK A;  1HD5 A;  3X2H A;  4JCW A;  2G6G A;  1OA9 A;  1BW4 A;  2PNW A;  3X2P A;  2BH0 A;  3X2L A;  2PJJ A;  4ENG A;  2HCZ X;  3X2N A;  1N10 A;  3SUL A;  1OA7 A;  3X2I A;  3CZB A; 
#chains in the Genus database with same CATH topology
 1CR5 A;  1PYU B;  1UHE A;  3O5A A;  5DYG A;  2JA7 A;  3SUJ A;  2JA6 A;  1TMO A;  2WB1 A;  3HU1 A;  2A6E D;  5DYI A;  2PJH B;  2AE0 X;  1L8F A;  1Y5I A;  4FFT A;  4GA6 A;  4AVR A;  1S3S A;  2G5D A;  4FG4 A;  5GLY A;  1DMS A;  1R9T A;  5T5I D;  1YNN D;  2GAE A;  1TWC A;  2ENG A;  4QIW A;  2VPX A;  4AON B;  3M3G A;  1PQE A;  3GTK A;  3GTO A;  4AYB A;  3SUM A;  1BW3 A;  1PT0 A;  2PMZ A;  2VUM A;  2B63 A;  1G8J A;  1YNJ D;  4KDL A;  3DMR A;  1YLE A;  5FTL A;  4KO8 A;  1WCM A;  2VPW A;  2A6H D;  1SIW A;  3HU2 A;  1Q16 A;  2BE5 D;  1QDN A;  1ZYR D;  4AAY A;  2HCZ X;  2JIM A;  2E2I A;  2NVX A;  1Y1W A;  3X2G A;  1AW8 B;  5C18 A;  2NYA A;  3PLX B;  3X2K A;  1ZC1 A;  2EEO B;  1TWH A;  2PI8 A;  3IR7 A;  1WLF A;  3QWZ A;  3ENG A;  3ML1 A;  1E18 A;  2YU9 A;  1FDO A;  4JS7 A;  1PT1 A;  4ZM7 A;  3X2J A;  2JIP A;  4DMR A;  4CRY G;  2DMR A;  3GTG A;  1E61 A;  1IW7 D;  1QCS A;  4NOH A;  3QC8 A;  1HD5 A;  1E32 A;  3FKI A;  3QQ7 A;  4KDI A;  2JA5 A;  1OGY A;  2E2H A;  3X2H A;  4C2M A;  1PYQ A;  1AA6 A;  2CW0 D;  2NVY A;  1DMR A;  3TIW A;  3X2P A;  2BH0 A;  2JIO A;  3H0G A;  3IR6 A;  4KLN A;  4ENG A;  2R7Z A;  2O5J D;  1CZ5 A;  1TWG A;  1BW4 A;  2KI8 A;  3TM7 B;  1I3Q A;  1PPY A;  5FTN A;  3IR5 A;  5GLX A;  3X2M A;  5FTK A;  4CS0 A;  2R93 A;  5GM9 A;  2NAP A;  1SMY D;  3GTL A;  1Y4Z A;  3X2O A;  2PIC A;  1E60 A;  4AZD A;  2V3V A;  4CRZ A;  1KQF A;  3HKZ A;  1SFO A;  4L48 A;  1TWF A;  3GTM A;  5H4U A;  4FER A;  2V45 A;  3D30 A;  2Y0S A;  3QQ8 A;  1UHD A;  5B6C A;  4JCW A;  3CQZ A;  4RV0 A;  4D7Z B;  1VC3 B;  2VPZ A;  2PJJ A;  1E5V A;  1K83 A;  3GTQ A;  3SUL A;  1R7R A;  3CZB A;  2JIQ A;  4JJO A;  4FG2 A;  1I50 A;  2R92 A;  1WC2 A;  1G8K A;  2YUJ A;  3OUG A;  5EPP A;  4JP7 A;  5C1B A;  1EU1 A;  1Y1V A;  3GTP A;  2KQA A;  1H5N A;  5FTJ A;  1FDI A;  1KQG A;  1PQF A;  2JIR A;  3HU3 A;  1H0H A;  4JP6 A;  2A68 D;  3CF2 A;  5T5M D;  2E7Z A;  3SUK A;  3X2I A;  2VPY A;  2A69 D;  1CZ4 A;  4AOK B;  2C45 A;  2G6G A;  1OA9 A;  2IV2 X;  4KOD A;  2PNW A;  5FTM A;  1PQH A;  1R27 A;  5GLF A;  3X2L A;  4GA5 A;  2WAQ A;  1N10 A;  3X2N A;  3GTJ A;  1OA7 A;  1TWA A; 
#chains in the Genus database with same CATH homology
 4JJO A;  5GLX A;  4FG2 A;  3SUJ A;  3X2G A;  3X2M A;  1WC2 A;  5GM9 A;  4JP7 A;  2AE0 X;  1L8F A;  2PI8 A;  4FFT A;  3X2K A;  4AVR A;  2KQA A;  3ENG A;  2G5D A;  4FG4 A;  4JS7 A;  5GLY A;  4ZM7 A;  3X2O A;  2PIC A;  3X2J A;  2GAE A;  2ENG A;  4L48 A;  3M3G A;  4JP6 A;  1BW3 A;  5H4U A;  4FER A;  3D30 A;  3SUM A;  3SUK A;  1HD5 A;  3X2H A;  4JCW A;  2G6G A;  1OA9 A;  1BW4 A;  2PNW A;  3X2P A;  2BH0 A;  3X2L A;  2PJJ A;  4ENG A;  2HCZ X;  3X2N A;  1N10 A;  3SUL A;  1OA7 A;  3X2I A;  3CZB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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