4JWIA

Crystal structure of the substrate binding domain of e.coli dnak in complex with sheep bac7(35-43)
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
213
structure length
213
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/antibiotic
molecule keywords Chaperone protein DnaK
publication title Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7.
pubmed rcsb
source organism Escherichia coli
total genus 61
structure length 213
sequence length 213
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4jwiA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4jwiA01
4R5IA 4B9QA 3C7NB 3DOBA 4EZXA 3C7NA 3DPQA 3DPPA 4JWCA 5TKYA 1DKZA 4JNFA 4JWEA 3T4AG 4PO2A 1CKRA 4R5GA 3OHXM 4E81A 2V7YA 4H6HA 4F01A 4EZUA 3N8EA 2QXLA 4EZNA 4EZQA 3T46A 3QNJA 2QFFA 4HYBA 3T48A 4R5KA 7HSCA 1DKYA 3H0XA 2KHOA 3L3OM 1YUWA 4WV5A 4JN4A 4HY9A 2WINM 5E84A 4EZYA 3DQGA 4JNEA 4EZWA 4H6IA 4EZOA 4R5LA 2OP6A 1U00A 4EZTA 4EZVA 2BPRA 4JWDA 4EZPA 4FL9A 4JWIA 4F00A 4R5JA 4EZSA 4EZRA 1Q5LA 3D2FA 1DG4A 3T47A 4WV7A 3T49A 1DKXA 3D2EA 1BPRA 4EZZA 3DPOA
chains in the Genus database with same CATH superfamily
1TQVA 1SU6A 4R5GA 4IM2A 4D8JA 4NQIA 4MQDA 4WPCA 3BVVA 3L3OM 3BUPA 1YUWA 4NSWA 3Q0KA 1SUFA 3DPOA 4M0MA 1MJGA 2ND0A 4B9QA 5FIGA 3DOBA 4JWEA 3T4AG 2LM0A 2V7YA 2F7RA 3ACOA 1QWUA 2JNSA 4ILGA 2WINM 3QNIA 4EZWA 3QA8A 1E2UA 4IM3A 3T49A 4F01A 1TQSA 2ALWA 4E81A 2GF4A 3EJTA 4ILHB 2Z0VA 4R5KA 3D4ZA 3CKDA 3DDGA 2YL9A 4ILIA 2YIVX 3QWEA 4EZOA 4EZPA 3ERCC 4IWQA 1BPRA 2Z8YA 1X03A 3CV5A 2D1LA 4EZUA 3CZNA 5FLEX 2QFFA 3SBTB 4HYBA 1I4LA 4AZ5A 3BUDA 1I49A 4EZTA 4FM3A 1Q5LA 4EZRA 1ZWWA 4NPHA 4IWPA 4UDXX 4R5IA 3D50A 1O7DC 2YL6A 3M3WA 2ND1A 3LLLA 1URUA 3BVXA 3SOGA 1OAOA 4AZBA 2RAIA 1U00A 2YLLA 2Z0OA 1GN9A 5C5BB 1JQKA 3G9GA 4WV7A 2X5CA 3ZEFA 2OBMA 4DCNC 2PY6A 4EZQA 3RV0A 4I1QA 3L3PA 1O7DB 2OO2A 4KIKA 3ER9B 3FD9A 3SYVA 2EFKA 4F00A 3F7WA 1TQWA 4EZZA 2OBLA 3I01A 2YLAA 4JNFA 1I4DA 2OW7A 2FYVA 1TQTA 1HWWA 3HAIA 1SU7A 4JWDA 4FL9A 3BVWA 3O3MB 3DPPA 3A98A 3VEAA 4HR1B 2C08A 2QXLA 2GAFD 3QNJA 4FZSA 1DKYA 2F1AA 4G6QA 4EZYA 3Q84A 4R5LA 2WYIA 4IM0A 1QX1A 3BVTA 1DKXA 4JL9A 2PMRA 3DPQA 3D4YA 2O0I1 3CAZA 2X3VA 3RV1A 2JNKA 2OZNB 4FZOA 1TQUA 3QE6A 4ATMA 3T48A 4AZHA 1R34A 2GA9D 4I43A 5E84A 2D4CA 2QKWA 2RT6A 3VEBA 1OA0A 3EJRA 1GNLA 3N8EA 3KDRA 3BLBA 4AZCA 2V0OA 4DYLA 1SU8A 2KHOA 3B53X 4JN4A 3HAJA 1YWMA 4AKVA 3SBSA 1UPXA 4EZSA 3UITA 2F18A 3DX3A 3C7NA 3D2EA 1LQ7A 3BUBA 2EFLA 3B51X 3ZEDA 1GNTA 1WDZA 4H6HA 3OK8A 3BUQA 2Z0NA 2RAJA 3LVTA 3B52X 1I4TA 2N3KA 4AVMA 3VKHA 3DX0A 2F7PA 4WPEA 2OP6A 4H8SA 2X3XA 1Y2OA 2Q12A 4FZPA 4EZXA 2FICA 2ELBA 2YIAA 1R5EA 3DDFA 2YL8A 3KAWA 2EWFA 3I2WA 3LMFA 2YKTA 3D51A 4BNEA 4E3CA 3KAVA 3GI7A 1QWNA 3I04A 3CZSA 3RPMA 3T47A 2RAKA 1PS3A 5TKYA 3I39X 4PO2A 3EJQA 2YI8A 3BVUA 3OWGA 2YL5A 2LXYA 4AZCB 3DQGA 1OA1A 5C5BA 2BPRA 3EJUA 4EZVA 1DG4A 4R5JA 1X04A 3C7NB 2Q13A 4JWCA 4UDYX 1DKZA 2ZXQA 2F1BA 2X3WA 3DX1A 4EZNA 3EJSA 2YIBA 3ABHA 2EX3B 2MI7A 1W9MA 2F7QA 4KIKB 4JNEA 3D2FA 3D52A 5KBPA 4AZ7A 3DX2A 3PLTA 1CKRA 3OHXM 1E9VA 3T46A 1ZYLA 2NCZA 2WYHA 4AZIA 1E1DA 2F7OA 7HSCA 4IW0A 3H0XA 4IWOA 2OW6A 4AZGA 3EJPA 3DX4A 3ER8C 2YI9A 4HR1A 3DYTA 1HTYA 4JLCA 4AZ6A 3O3NB 3BUIA 1HXKA 4WV5A 4HY9A 4H6IA 1R33A 3HAHA 4JWIA 3O3OB 3CVRA
chains in the Genus database with same CATH topology
4JL9A 4R5IA 5TKYA 3DPQA 3I39X 1SU6A 4PO2A 4R5GA 4IM2A 3RV1A 2ND1A 2YI8A 3OWGA 4D8JA 3T48A 1OAOA 4MQDA 3L3OM 1YUWA 2GA9D 4I43A 5E84A 3DQGA 1OA1A 1U00A 2BPRA 4EZVA 1GN9A 1DG4A 4R5JA 1JQKA 1SUFA 4WV7A 3DPOA 2X5CA 4M0MA 2RT6A 1MJGA 2ND0A 4B9QA 3ZEFA 5FIGA 3VEBA 3C7NB 1OA0A 4JWCA 4UDYX 3DOBA 1DKZA 4JWEA 3T4AG 2LM0A 2OBMA 1GNLA 2V7YA 3N8EA 2PY6A 3KDRA 3RV0A 4EZNA 4EZQA 2YIBA 1SU8A 2EX3B 4KIKA 2JNSA 3ER9B 1W9MA 3FD9A 4ILGA 2KHOA 3B53X 4JN4A 2WINM 4KIKB 4JNEA 4EZWA 3SBSA 3QA8A 1E2UA 1UPXA 4F00A 4EZSA 3UITA 3F7WA 4IM3A 3T49A 3D2EA 3C7NA 4EZZA 3D2FA 4F01A 2OBLA 3B51X 3ZEDA 3I01A 4JNFA 1CKRA 4E81A 3OHXM 1GNTA 4H6HA 1E9VA 4ILHB 3T46A 1ZYLA 2NCZA 3B52X 1E1DA 4R5KA 7HSCA 4IW0A 3H0XA 4IWOA 2N3KA 3VKHA 4ILIA 2YIVX 4EZOA 2OP6A 1SU7A 4JWDA 4EZPA 4FL9A 3ER8C 3ERCC 2YI9A 4EZXA 4IWQA 3O3MB 1BPRA 4HR1A 2Z8YA 2YIAA 3DPPA 3A98A 3VEAA 4HR1B 4EZUA 5FLEX 2QXLA 4JLCA 3KAWA 2EWFA 2GAFD 3QNJA 3O3NB 2QFFA 3LMFA 3SBTB 4HYBA 1DKYA 4G6QA 4WV5A 4HY9A 4EZYA 4E3CA 4H6IA 4R5LA 3KAVA 4EZTA 3GI7A 3I04A 4FM3A 3O3OB 4IM0A 4JWIA 4EZRA 1Q5LA 4NPHA 3T47A 1DKXA 4IWPA 4UDXX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R5I A;  4B9Q A;  3C7N B;  3DOB A;  4EZX A;  3C7N A;  3DPQ A;  3DPP A;  4JWC A;  5TKY A;  1DKZ A;  4JNF A;  4JWE A;  3T4A G;  4PO2 A;  1CKR A;  4R5G A;  3OHX M;  4E81 A;  2V7Y A;  4H6H A;  4F01 A;  4EZU A;  3N8E A;  2QXL A;  4EZN A;  4EZQ A;  3T46 A;  3QNJ A;  2QFF A;  4HYB A;  3T48 A;  4R5K A;  7HSC A;  1DKY A;  3H0X A;  2KHO A;  3L3O M;  1YUW A;  4WV5 A;  4JN4 A;  4HY9 A;  2WIN M;  5E84 A;  4EZY A;  3DQG A;  4JNE A;  4EZW A;  4H6I A;  4EZO A;  4R5L A;  2OP6 A;  1U00 A;  4EZT A;  4EZV A;  2BPR A;  4JWD A;  4EZP A;  4FL9 A;  4JWI A;  4F00 A;  4R5J A;  4EZS A;  4EZR A;  1Q5L A;  3D2F A;  1DG4 A;  3T47 A;  4WV7 A;  3T49 A;  1DKX A;  3D2E A;  1BPR A;  4EZZ A;  3DPO A; 
#chains in the Genus database with same CATH topology
 1TQV A;  1SU6 A;  4R5G A;  4IM2 A;  4D8J A;  4NQI A;  4MQD A;  4WPC A;  3BVV A;  3L3O M;  3BUP A;  1YUW A;  4NSW A;  3Q0K A;  1SUF A;  3DPO A;  4M0M A;  1MJG A;  2ND0 A;  4B9Q A;  5FIG A;  3DOB A;  4JWE A;  3T4A G;  2LM0 A;  2V7Y A;  2F7R A;  3ACO A;  1QWU A;  2JNS A;  4ILG A;  2WIN M;  3QNI A;  4EZW A;  3QA8 A;  1E2U A;  4IM3 A;  3T49 A;  4F01 A;  1TQS A;  2ALW A;  4E81 A;  2GF4 A;  3EJT A;  4ILH B;  2Z0V A;  4R5K A;  3D4Z A;  3CKD A;  3DDG A;  2YL9 A;  4ILI A;  2YIV X;  3QWE A;  4EZO A;  4EZP A;  3ERC C;  4IWQ A;  1BPR A;  2Z8Y A;  1X03 A;  3CV5 A;  2D1L A;  4EZU A;  3CZN A;  5FLE X;  2QFF A;  3SBT B;  4HYB A;  1I4L A;  4AZ5 A;  3BUD A;  1I49 A;  4EZT A;  4FM3 A;  1Q5L A;  4EZR A;  1ZWW A;  4NPH A;  4IWP A;  4UDX X;  4R5I A;  3D50 A;  1O7D C;  2YL6 A;  3M3W A;  2ND1 A;  3LLL A;  1URU A;  3BVX A;  3SOG A;  1OAO A;  4AZB A;  2RAI A;  1U00 A;  2YLL A;  2Z0O A;  1GN9 A;  5C5B B;  1JQK A;  3G9G A;  4WV7 A;  2X5C A;  3ZEF A;  2OBM A;  4DCN C;  2PY6 A;  4EZQ A;  3RV0 A;  4I1Q A;  3L3P A;  1O7D B;  2OO2 A;  4KIK A;  3ER9 B;  3FD9 A;  3SYV A;  2EFK A;  4F00 A;  3F7W A;  1TQW A;  4EZZ A;  2OBL A;  3I01 A;  2YLA A;  4JNF A;  1I4D A;  2OW7 A;  2FYV A;  1TQT A;  1HWW A;  3HAI A;  1SU7 A;  4JWD A;  4FL9 A;  3BVW A;  3O3M B;  3DPP A;  3A98 A;  3VEA A;  4HR1 B;  2C08 A;  2QXL A;  2GAF D;  3QNJ A;  4FZS A;  1DKY A;  2F1A A;  4G6Q A;  4EZY A;  3Q84 A;  4R5L A;  2WYI A;  4IM0 A;  1QX1 A;  3BVT A;  1DKX A;  4JL9 A;  2PMR A;  3DPQ A;  3D4Y A;  2O0I 1;  3CAZ A;  2X3V A;  3RV1 A;  2JNK A;  2OZN B;  4FZO A;  1TQU A;  3QE6 A;  4ATM A;  3T48 A;  4AZH A;  1R34 A;  2GA9 D;  4I43 A;  5E84 A;  2D4C A;  2QKW A;  2RT6 A;  3VEB A;  1OA0 A;  3EJR A;  1GNL A;  3N8E A;  3KDR A;  3BLB A;  4AZC A;  2V0O A;  4DYL A;  1SU8 A;  2KHO A;  3B53 X;  4JN4 A;  3HAJ A;  1YWM A;  4AKV A;  3SBS A;  1UPX A;  4EZS A;  3UIT A;  2F18 A;  3DX3 A;  3C7N A;  3D2E A;  1LQ7 A;  3BUB A;  2EFL A;  3B51 X;  3ZED A;  1GNT A;  1WDZ A;  4H6H A;  3OK8 A;  3BUQ A;  2Z0N A;  2RAJ A;  3LVT A;  3B52 X;  1I4T A;  2N3K A;  4AVM A;  3VKH A;  3DX0 A;  2F7P A;  4WPE A;  2OP6 A;  4H8S A;  2X3X A;  1Y2O A;  2Q12 A;  4FZP A;  4EZX A;  2FIC A;  2ELB A;  2YIA A;  1R5E A;  3DDF A;  2YL8 A;  3KAW A;  2EWF A;  3I2W A;  3LMF A;  2YKT A;  3D51 A;  4BNE A;  4E3C A;  3KAV A;  3GI7 A;  1QWN A;  3I04 A;  3CZS A;  3RPM A;  3T47 A;  2RAK A;  1PS3 A;  5TKY A;  3I39 X;  4PO2 A;  3EJQ A;  2YI8 A;  3BVU A;  3OWG A;  2YL5 A;  2LXY A;  4AZC B;  3DQG A;  1OA1 A;  5C5B A;  2BPR A;  3EJU A;  4EZV A;  1DG4 A;  4R5J A;  1X04 A;  3C7N B;  2Q13 A;  4JWC A;  4UDY X;  1DKZ A;  2ZXQ A;  2F1B A;  2X3W A;  3DX1 A;  4EZN A;  3EJS A;  2YIB A;  3ABH A;  2EX3 B;  2MI7 A;  1W9M A;  2F7Q A;  4KIK B;  4JNE A;  3D2F A;  3D52 A;  5KBP A;  4AZ7 A;  3DX2 A;  3PLT A;  1CKR A;  3OHX M;  1E9V A;  3T46 A;  1ZYL A;  2NCZ A;  2WYH A;  4AZI A;  1E1D A;  2F7O A;  7HSC A;  4IW0 A;  3H0X A;  4IWO A;  2OW6 A;  4AZG A;  3EJP A;  3DX4 A;  3ER8 C;  2YI9 A;  4HR1 A;  3DYT A;  1HTY A;  4JLC A;  4AZ6 A;  3O3N B;  3BUI A;  1HXK A;  4WV5 A;  4HY9 A;  4H6I A;  1R33 A;  3HAH A;  4JWI A;  3O3O B;  3CVR A; 
#chains in the Genus database with same CATH homology
 4JL9 A;  4R5I A;  5TKY A;  3DPQ A;  3I39 X;  1SU6 A;  4PO2 A;  4R5G A;  4IM2 A;  3RV1 A;  2ND1 A;  2YI8 A;  3OWG A;  4D8J A;  3T48 A;  1OAO A;  4MQD A;  3L3O M;  1YUW A;  2GA9 D;  4I43 A;  5E84 A;  3DQG A;  1OA1 A;  1U00 A;  2BPR A;  4EZV A;  1GN9 A;  1DG4 A;  4R5J A;  1JQK A;  1SUF A;  4WV7 A;  3DPO A;  2X5C A;  4M0M A;  2RT6 A;  1MJG A;  2ND0 A;  4B9Q A;  3ZEF A;  5FIG A;  3VEB A;  3C7N B;  1OA0 A;  4JWC A;  4UDY X;  3DOB A;  1DKZ A;  4JWE A;  3T4A G;  2LM0 A;  2OBM A;  1GNL A;  2V7Y A;  3N8E A;  2PY6 A;  3KDR A;  3RV0 A;  4EZN A;  4EZQ A;  2YIB A;  1SU8 A;  2EX3 B;  4KIK A;  2JNS A;  3ER9 B;  1W9M A;  3FD9 A;  4ILG A;  2KHO A;  3B53 X;  4JN4 A;  2WIN M;  4KIK B;  4JNE A;  4EZW A;  3SBS A;  3QA8 A;  1E2U A;  1UPX A;  4F00 A;  4EZS A;  3UIT A;  3F7W A;  4IM3 A;  3T49 A;  3D2E A;  3C7N A;  4EZZ A;  3D2F A;  4F01 A;  2OBL A;  3B51 X;  3ZED A;  3I01 A;  4JNF A;  1CKR A;  4E81 A;  3OHX M;  1GNT A;  4H6H A;  1E9V A;  4ILH B;  3T46 A;  1ZYL A;  2NCZ A;  3B52 X;  1E1D A;  4R5K A;  7HSC A;  4IW0 A;  3H0X A;  4IWO A;  2N3K A;  3VKH A;  4ILI A;  2YIV X;  4EZO A;  2OP6 A;  1SU7 A;  4JWD A;  4EZP A;  4FL9 A;  3ER8 C;  3ERC C;  2YI9 A;  4EZX A;  4IWQ A;  3O3M B;  1BPR A;  4HR1 A;  2Z8Y A;  2YIA A;  3DPP A;  3A98 A;  3VEA A;  4HR1 B;  4EZU A;  5FLE X;  2QXL A;  4JLC A;  3KAW A;  2EWF A;  2GAF D;  3QNJ A;  3O3N B;  2QFF A;  3LMF A;  3SBT B;  4HYB A;  1DKY A;  4G6Q A;  4WV5 A;  4HY9 A;  4EZY A;  4E3C A;  4H6I A;  4R5L A;  3KAV A;  4EZT A;  3GI7 A;  3I04 A;  4FM3 A;  3O3O B;  4IM0 A;  4JWI A;  4EZR A;  1Q5L A;  4NPH A;  3T47 A;  1DKX A;  4IWP A;  4UDX X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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