4KAVA

Crystal structure of the soluble domain of lipooligosaccharide phosphoethanolamine transferase a from neisseria meningitidis
Total Genus 122
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
Knots found
sequence length
334
structure length
333
Chain Sequence
SNIPYTQLDMAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSCGTSAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords YhbX/YhjW/YijP/YjdB family protein
publication title The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) Required for Resistance to Polymyxin.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Transferase
total genus 122
structure length 333
sequence length 334
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.27: Phosphatidylglycerophosphatase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kavA00
1ELZA 1FSUA 1EI6A 5L0BA 4NWJA 3BDFA 1KHKA 3WAYA 3WAWA 1E1ZP 1P49A 2W5VA 3IGYB 4MHXA 1ED8A 4N7TA 4KAYA 3E2DA 5EGHA 2W8SA 4CYSA 2ANHA 4ZG6A 5LRNA 4LR7A 2X98A 3UN5A 4ZG7A 3NKNA 2D1GA 1KHLA 2W5QA 5TJ3A 2W5SA 3M7VA 1SHNA 4KAVA 5K4PA 3M8WA 4CYRA 4LR2A 4UORA 1N2LA 2W5TA 1EW9A 1N2KA 4CXUA 1ALIA 2GSUA 1KH4A 4UPHA 5C66A 1ZEBA 5HRTA 4LRCA 4CXSA 5DLWA 4LRDA 3NKOA 1Y6VA 5LQQA 4KJDA 1HQAA 4LR9A 2GSOA 3OT9A 4LREA 4LQYA 3LXQA 1URBA 2RH6A 4UPKA 1KH5A 4GTXA 1EW2A 1E33P 1ED9A 4ZGAA 1KH7A 1KHJA 4LRBA 3IDDA 3T01A 5GOVA 3KD8A 1AJDA 3BDGA 2IUCB 3BDGB 1SHQA 1ELXA 2XR9A 3NKQA 4B56A 2QZUA 2W5WA 3SZZA 3TWZA 3SZYA 3NKPA 1URAA 3ED4A 4MIVA 3T02A 3A52A 3MK1A 2IFYA 3TG0A 4KJGA 4UOPA 5DLTA 4YR1A 1ANJA 3WAXA 3B5QA 1AJAA 1ANIA 3NKMA 2VQRA 4GTWA 3CMRA 3TX0A 5IJSA 2W8DA 1K7HA 5LIAA 3BDHA 3NKRA 2GLQA 3WBHA 1ZEDA 1HJKA 2IUCA 2XRGA 3MK0A 4LRAA 5EGEA 1ALJA 4FDJA 5LRMA 1AJCA 4CXKA 1E2SP 1EJJA 5AJ9A 3UO0A 2GA3A 3DYCA 4LR8A 4NWXA 4UPIA 3M8ZA 3Q3QA 4KM4A 5L0EA 4MY4A 4UPLA 1AUKA 5GRRA 3UNYA 1ALHA 2W5XA 1KH9A 3UN2A 5KXAA 3T00A 1ZEFA 1KHNA 4GTYA 2GSNA 1B8JA 5L0KA 4TN0A 1ELYA 4ZG9A 3NVLA 4FDIA 4LRFA 2G9YA 2ZKTA 3MK2A 1Y7AA 3DPCA 4QAXA 3WAVA 1EQJA 4UOOA 1EW8A 5IJQA 4GTZA 3IGZB 3M8YA 1AJBA 1ALKA 1E3CP 3UN3A 1HDHA 1O99A 5INHA 5DLVA 1O98A 2W5RA
chains in the Genus database with same CATH superfamily
1ELZA 1FSUA 1EI6A 5L0BA 4NWJA 3BDFA 1KHKA 3WAYA 3WAWA 1E1ZP 1P49A 2W5VA 3IGYB 4MHXA 1ED8A 4N7TA 4KAYA 3E2DA 5EGHA 2W8SA 4CYSA 2ANHA 4ZG6A 5LRNA 4LR7A 2X98A 3UN5A 4ZG7A 3NKNA 2D1GA 1KHLA 2W5QA 5TJ3A 2W5SA 3M7VA 1SHNA 4KAVA 5K4PA 3M8WA 4CYRA 4LR2A 4UORA 1N2LA 2W5TA 1EW9A 1N2KA 4CXUA 1ALIA 2GSUA 1KH4A 4UPHA 5C66A 1ZEBA 5HRTA 4LRCA 4CXSA 5DLWA 4LRDA 3NKOA 1Y6VA 5LQQA 4KJDA 1HQAA 4LR9A 2GSOA 3OT9A 4LREA 4LQYA 3LXQA 1URBA 2RH6A 4UPKA 1KH5A 4GTXA 1EW2A 1E33P 1ED9A 4ZGAA 1KH7A 1KHJA 4LRBA 3IDDA 3T01A 5GOVA 3KD8A 1AJDA 3BDGA 2IUCB 3BDGB 1SHQA 1ELXA 2XR9A 3NKQA 4B56A 2QZUA 2W5WA 3SZZA 3TWZA 3SZYA 3NKPA 1URAA 3ED4A 4MIVA 3T02A 3A52A 3MK1A 2IFYA 3TG0A 4KJGA 4UOPA 5DLTA 4YR1A 1ANJA 3WAXA 3B5QA 1AJAA 1ANIA 3NKMA 2VQRA 4GTWA 3CMRA 3TX0A 5IJSA 2W8DA 1K7HA 5LIAA 3BDHA 3NKRA 2GLQA 3WBHA 1ZEDA 1HJKA 2IUCA 2XRGA 3MK0A 4LRAA 5EGEA 1ALJA 4FDJA 5LRMA 1AJCA 4CXKA 1E2SP 1EJJA 5AJ9A 3UO0A 2GA3A 3DYCA 4LR8A 4NWXA 4UPIA 3M8ZA 3Q3QA 4KM4A 5L0EA 4MY4A 4UPLA 1AUKA 5GRRA 3UNYA 1ALHA 2W5XA 1KH9A 3UN2A 5KXAA 3T00A 1ZEFA 1KHNA 4GTYA 2GSNA 1B8JA 5L0KA 4TN0A 1ELYA 4ZG9A 3NVLA 4FDIA 4LRFA 2G9YA 2ZKTA 3MK2A 1Y7AA 3DPCA 4QAXA 3WAVA 1EQJA 4UOOA 1EW8A 5IJQA 4GTZA 3IGZB 3M8YA 1AJBA 1ALKA 1E3CP 3UN3A 1HDHA 1O99A 5INHA 5DLVA 1O98A 2W5RA
chains in the Genus database with same CATH topology
1ELZA 1FSUA 1EI6A 5L0BA 4NWJA 3BDFA 1KHKA 3WAYA 3WAWA 1E1ZP 1P49A 2W5VA 3IGYB 4MHXA 1ED8A 4N7TA 4KAYA 3E2DA 5EGHA 2W8SA 4CYSA 2ANHA 4ZG6A 5LRNA 4LR7A 2X98A 3UN5A 4ZG7A 3NKNA 2D1GA 1KHLA 2W5QA 5TJ3A 2W5SA 3M7VA 1SHNA 4KAVA 5K4PA 3M8WA 4CYRA 4LR2A 4UORA 1N2LA 2W5TA 1EW9A 1N2KA 4CXUA 1ALIA 2GSUA 1KH4A 4UPHA 5C66A 1ZEBA 5HRTA 4LRCA 4CXSA 5DLWA 4LRDA 3NKOA 1Y6VA 5LQQA 4KJDA 1HQAA 4LR9A 2GSOA 3OT9A 4LREA 4LQYA 3LXQA 1URBA 2RH6A 4UPKA 1KH5A 4GTXA 1EW2A 1E33P 1ED9A 4ZGAA 1KH7A 1KHJA 4LRBA 3IDDA 3T01A 5GOVA 3KD8A 1AJDA 3BDGA 2IUCB 3BDGB 1SHQA 1ELXA 2XR9A 3NKQA 4B56A 2QZUA 2W5WA 3SZZA 3TWZA 3SZYA 3NKPA 1URAA 3ED4A 4MIVA 3T02A 3A52A 3MK1A 2IFYA 3TG0A 4KJGA 4UOPA 5DLTA 4YR1A 1ANJA 3WAXA 3B5QA 1AJAA 1ANIA 3NKMA 2VQRA 4GTWA 3CMRA 3TX0A 5IJSA 2W8DA 1K7HA 5LIAA 3BDHA 3NKRA 2GLQA 3WBHA 1ZEDA 1HJKA 2IUCA 2XRGA 3MK0A 4LRAA 5EGEA 1ALJA 4FDJA 5LRMA 1AJCA 4CXKA 1E2SP 1EJJA 5AJ9A 3UO0A 2GA3A 3DYCA 4LR8A 4NWXA 4UPIA 3M8ZA 3Q3QA 4KM4A 5L0EA 4MY4A 4UPLA 1AUKA 5GRRA 3UNYA 1ALHA 2W5XA 1KH9A 3UN2A 5KXAA 3T00A 1ZEFA 1KHNA 4GTYA 2GSNA 1B8JA 5L0KA 4TN0A 1ELYA 4ZG9A 3NVLA 4FDIA 4LRFA 2G9YA 2ZKTA 3MK2A 1Y7AA 3DPCA 4QAXA 3WAVA 1EQJA 4UOOA 1EW8A 5IJQA 4GTZA 3IGZB 3M8YA 1AJBA 1ALKA 1E3CP 3UN3A 1HDHA 1O99A 5INHA 5DLVA 1O98A 2W5RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ELZ A;  1FSU A;  1EI6 A;  5L0B A;  4NWJ A;  3BDF A;  1KHK A;  3WAY A;  3WAW A;  1E1Z P;  1P49 A;  2W5V A;  3IGY B;  4MHX A;  1ED8 A;  4N7T A;  4KAY A;  3E2D A;  5EGH A;  2W8S A;  4CYS A;  2ANH A;  4ZG6 A;  5LRN A;  4LR7 A;  2X98 A;  3UN5 A;  4ZG7 A;  3NKN A;  2D1G A;  1KHL A;  2W5Q A;  5TJ3 A;  2W5S A;  3M7V A;  1SHN A;  4KAV A;  5K4P A;  3M8W A;  4CYR A;  4LR2 A;  4UOR A;  1N2L A;  2W5T A;  1EW9 A;  1N2K A;  4CXU A;  1ALI A;  2GSU A;  1KH4 A;  4UPH A;  5C66 A;  1ZEB A;  5HRT A;  4LRC A;  4CXS A;  5DLW A;  4LRD A;  3NKO A;  1Y6V A;  5LQQ A;  4KJD A;  1HQA A;  4LR9 A;  2GSO A;  3OT9 A;  4LRE A;  4LQY A;  3LXQ A;  1URB A;  2RH6 A;  4UPK A;  1KH5 A;  4GTX A;  1EW2 A;  1E33 P;  1ED9 A;  4ZGA A;  1KH7 A;  1KHJ A;  4LRB A;  3IDD A;  3T01 A;  5GOV A;  3KD8 A;  1AJD A;  3BDG A;  2IUC B;  3BDG B;  1SHQ A;  1ELX A;  2XR9 A;  3NKQ A;  4B56 A;  2QZU A;  2W5W A;  3SZZ A;  3TWZ A;  3SZY A;  3NKP A;  1URA A;  3ED4 A;  4MIV A;  3T02 A;  3A52 A;  3MK1 A;  2IFY A;  3TG0 A;  4KJG A;  4UOP A;  5DLT A;  4YR1 A;  1ANJ A;  3WAX A;  3B5Q A;  1AJA A;  1ANI A;  3NKM A;  2VQR A;  4GTW A;  3CMR A;  3TX0 A;  5IJS A;  2W8D A;  1K7H A;  5LIA A;  3BDH A;  3NKR A;  2GLQ A;  3WBH A;  1ZED A;  1HJK A;  2IUC A;  2XRG A;  3MK0 A;  4LRA A;  5EGE A;  1ALJ A;  4FDJ A;  5LRM A;  1AJC A;  4CXK A;  1E2S P;  1EJJ A;  5AJ9 A;  3UO0 A;  2GA3 A;  3DYC A;  4LR8 A;  4NWX A;  4UPI A;  3M8Z A;  3Q3Q A;  4KM4 A;  5L0E A;  4MY4 A;  4UPL A;  1AUK A;  5GRR A;  3UNY A;  1ALH A;  2W5X A;  1KH9 A;  3UN2 A;  5KXA A;  3T00 A;  1ZEF A;  1KHN A;  4GTY A;  2GSN A;  1B8J A;  5L0K A;  4TN0 A;  1ELY A;  4ZG9 A;  3NVL A;  4FDI A;  4LRF A;  2G9Y A;  2ZKT A;  3MK2 A;  1Y7A A;  3DPC A;  4QAX A;  3WAV A;  1EQJ A;  4UOO A;  1EW8 A;  5IJQ A;  4GTZ A;  3IGZ B;  3M8Y A;  1AJB A;  1ALK A;  1E3C P;  3UN3 A;  1HDH A;  1O99 A;  5INH A;  5DLV A;  1O98 A;  2W5R A; 
#chains in the Genus database with same CATH topology
 1ELZ A;  1FSU A;  1EI6 A;  5L0B A;  4NWJ A;  3BDF A;  1KHK A;  3WAY A;  3WAW A;  1E1Z P;  1P49 A;  2W5V A;  3IGY B;  4MHX A;  1ED8 A;  4N7T A;  4KAY A;  3E2D A;  5EGH A;  2W8S A;  4CYS A;  2ANH A;  4ZG6 A;  5LRN A;  4LR7 A;  2X98 A;  3UN5 A;  4ZG7 A;  3NKN A;  2D1G A;  1KHL A;  2W5Q A;  5TJ3 A;  2W5S A;  3M7V A;  1SHN A;  4KAV A;  5K4P A;  3M8W A;  4CYR A;  4LR2 A;  4UOR A;  1N2L A;  2W5T A;  1EW9 A;  1N2K A;  4CXU A;  1ALI A;  2GSU A;  1KH4 A;  4UPH A;  5C66 A;  1ZEB A;  5HRT A;  4LRC A;  4CXS A;  5DLW A;  4LRD A;  3NKO A;  1Y6V A;  5LQQ A;  4KJD A;  1HQA A;  4LR9 A;  2GSO A;  3OT9 A;  4LRE A;  4LQY A;  3LXQ A;  1URB A;  2RH6 A;  4UPK A;  1KH5 A;  4GTX A;  1EW2 A;  1E33 P;  1ED9 A;  4ZGA A;  1KH7 A;  1KHJ A;  4LRB A;  3IDD A;  3T01 A;  5GOV A;  3KD8 A;  1AJD A;  3BDG A;  2IUC B;  3BDG B;  1SHQ A;  1ELX A;  2XR9 A;  3NKQ A;  4B56 A;  2QZU A;  2W5W A;  3SZZ A;  3TWZ A;  3SZY A;  3NKP A;  1URA A;  3ED4 A;  4MIV A;  3T02 A;  3A52 A;  3MK1 A;  2IFY A;  3TG0 A;  4KJG A;  4UOP A;  5DLT A;  4YR1 A;  1ANJ A;  3WAX A;  3B5Q A;  1AJA A;  1ANI A;  3NKM A;  2VQR A;  4GTW A;  3CMR A;  3TX0 A;  5IJS A;  2W8D A;  1K7H A;  5LIA A;  3BDH A;  3NKR A;  2GLQ A;  3WBH A;  1ZED A;  1HJK A;  2IUC A;  2XRG A;  3MK0 A;  4LRA A;  5EGE A;  1ALJ A;  4FDJ A;  5LRM A;  1AJC A;  4CXK A;  1E2S P;  1EJJ A;  5AJ9 A;  3UO0 A;  2GA3 A;  3DYC A;  4LR8 A;  4NWX A;  4UPI A;  3M8Z A;  3Q3Q A;  4KM4 A;  5L0E A;  4MY4 A;  4UPL A;  1AUK A;  5GRR A;  3UNY A;  1ALH A;  2W5X A;  1KH9 A;  3UN2 A;  5KXA A;  3T00 A;  1ZEF A;  1KHN A;  4GTY A;  2GSN A;  1B8J A;  5L0K A;  4TN0 A;  1ELY A;  4ZG9 A;  3NVL A;  4FDI A;  4LRF A;  2G9Y A;  2ZKT A;  3MK2 A;  1Y7A A;  3DPC A;  4QAX A;  3WAV A;  1EQJ A;  4UOO A;  1EW8 A;  5IJQ A;  4GTZ A;  3IGZ B;  3M8Y A;  1AJB A;  1ALK A;  1E3C P;  3UN3 A;  1HDH A;  1O99 A;  5INH A;  5DLV A;  1O98 A;  2W5R A; 
#chains in the Genus database with same CATH homology
 1ELZ A;  1FSU A;  1EI6 A;  5L0B A;  4NWJ A;  3BDF A;  1KHK A;  3WAY A;  3WAW A;  1E1Z P;  1P49 A;  2W5V A;  3IGY B;  4MHX A;  1ED8 A;  4N7T A;  4KAY A;  3E2D A;  5EGH A;  2W8S A;  4CYS A;  2ANH A;  4ZG6 A;  5LRN A;  4LR7 A;  2X98 A;  3UN5 A;  4ZG7 A;  3NKN A;  2D1G A;  1KHL A;  2W5Q A;  5TJ3 A;  2W5S A;  3M7V A;  1SHN A;  4KAV A;  5K4P A;  3M8W A;  4CYR A;  4LR2 A;  4UOR A;  1N2L A;  2W5T A;  1EW9 A;  1N2K A;  4CXU A;  1ALI A;  2GSU A;  1KH4 A;  4UPH A;  5C66 A;  1ZEB A;  5HRT A;  4LRC A;  4CXS A;  5DLW A;  4LRD A;  3NKO A;  1Y6V A;  5LQQ A;  4KJD A;  1HQA A;  4LR9 A;  2GSO A;  3OT9 A;  4LRE A;  4LQY A;  3LXQ A;  1URB A;  2RH6 A;  4UPK A;  1KH5 A;  4GTX A;  1EW2 A;  1E33 P;  1ED9 A;  4ZGA A;  1KH7 A;  1KHJ A;  4LRB A;  3IDD A;  3T01 A;  5GOV A;  3KD8 A;  1AJD A;  3BDG A;  2IUC B;  3BDG B;  1SHQ A;  1ELX A;  2XR9 A;  3NKQ A;  4B56 A;  2QZU A;  2W5W A;  3SZZ A;  3TWZ A;  3SZY A;  3NKP A;  1URA A;  3ED4 A;  4MIV A;  3T02 A;  3A52 A;  3MK1 A;  2IFY A;  3TG0 A;  4KJG A;  4UOP A;  5DLT A;  4YR1 A;  1ANJ A;  3WAX A;  3B5Q A;  1AJA A;  1ANI A;  3NKM A;  2VQR A;  4GTW A;  3CMR A;  3TX0 A;  5IJS A;  2W8D A;  1K7H A;  5LIA A;  3BDH A;  3NKR A;  2GLQ A;  3WBH A;  1ZED A;  1HJK A;  2IUC A;  2XRG A;  3MK0 A;  4LRA A;  5EGE A;  1ALJ A;  4FDJ A;  5LRM A;  1AJC A;  4CXK A;  1E2S P;  1EJJ A;  5AJ9 A;  3UO0 A;  2GA3 A;  3DYC A;  4LR8 A;  4NWX A;  4UPI A;  3M8Z A;  3Q3Q A;  4KM4 A;  5L0E A;  4MY4 A;  4UPL A;  1AUK A;  5GRR A;  3UNY A;  1ALH A;  2W5X A;  1KH9 A;  3UN2 A;  5KXA A;  3T00 A;  1ZEF A;  1KHN A;  4GTY A;  2GSN A;  1B8J A;  5L0K A;  4TN0 A;  1ELY A;  4ZG9 A;  3NVL A;  4FDI A;  4LRF A;  2G9Y A;  2ZKT A;  3MK2 A;  1Y7A A;  3DPC A;  4QAX A;  3WAV A;  1EQJ A;  4UOO A;  1EW8 A;  5IJQ A;  4GTZ A;  3IGZ B;  3M8Y A;  1AJB A;  1ALK A;  1E3C P;  3UN3 A;  1HDH A;  1O99 A;  5INH A;  5DLV A;  1O98 A;  2W5R A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...