4KAVA

Crystal structure of the soluble domain of lipooligosaccharide phosphoethanolamine transferase a from neisseria meningitidis
Total Genus 122
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
Knots found
sequence length
334
structure length
333
Chain Sequence
SNIPYTQLDMAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSCGTSAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords YhbX/YhjW/YijP/YjdB family protein
publication title The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) Required for Resistance to Polymyxin.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 122
structure length 333
sequence length 334
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.27: Phosphatidylglycerophosphatase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kavA00
1KH9A 4CYRA 1EW9A 2IUCB 1AJDA 4UPLA 4MIVA 1ALJA 3WAWA 4B56A 1ZEDA 2X98A 4LRAA 5GRRA 2GA3A 4CXSA 1EJJA 1ELYA 1FSUA 4LR8A 2W5TA 3SZZA 1O98A 2W5VA 4KAVA 4TN0A 2ANHA 1HJKA 1HQAA 3SZYA 1AJAA 4KJDA 5IJQA 5KXAA 3E2DA 2ZKTA 1KH7A 5LRMA 3T02A 2W5XA 3NKNA 3CMRA 3NKPA 3DPCA 4LQYA 3WAXA 2W5QA 1AJBA 3MK2A 1KHKA 1E33P 3A52A 3UO0A 4KJGA 3KD8A 1ED9A 5DLTA 1N2KA 2W8DA 5INHA 4KAYA 4CXUA 1ALIA 3LXQA 5GOVA 1Y7AA 3BDGB 4GTWA 5LIAA 1SHNA 5K4PA 5AJ9A 2QZUA 4UOPA 3T01A 3WAVA 3MK1A 2G9YA 3BDFA 1AUKA 1EI6A 3BDHA 5L0EA 2GLQA 3IDDA 1AJCA 1ZEBA 3MK0A 2W5WA 1KHJA 1ELXA 3IGYB 4UORA 3M8YA 4ZG6A 5L0KA 2W8SA 1KHLA 1ANIA 1ALKA 4LRBA 1ELZA 2GSUA 3Q3QA 3NKQA 5HRTA 5L0BA 2IUCA 4ZGAA 3T00A 3UN2A 3TX0A 3WAYA 4UPHA 1EQJA 4NWXA 1ZEFA 3NKMA 4GTXA 3TWZA 4ZG9A 5DLVA 4UPIA 2RH6A 4FDJA 1E1ZP 1E2SP 1Y6VA 4YR1A 1SHQA 4FDIA 4CYSA 1KHNA 3M8ZA 1O99A 2IFYA 5EGEA 3B5QA 3NKRA 1K7HA 4KM4A 1HDHA 1ALHA 1ANJA 3IGZB 3M8WA 4LRCA 5IJSA 4MHXA 2GSNA 2VQRA 1P49A 3ED4A 3UNYA 4CXKA 2XRGA 2W5SA 1EW2A 2XR9A 4LRFA 4N7TA 1N2LA 5C66A 3NKOA 5TJ3A 2W5RA 1KH5A 3TG0A 5DLWA 3WBHA 4UPKA 4GTYA 3BDGA 4UOOA 4ZG7A 2GSOA 5LQQA 1ED8A 4LRDA 1B8JA 1E3CP 1URBA 1URAA 3UN5A 3DYCA 4LR2A 4MY4A 4GTZA 3UN3A 4LREA 4NWJA 3NVLA 3M7VA 2D1GA 1EW8A 1KH4A 5EGHA 3OT9A 4QAXA 4LR9A 5LRNA 4LR7A
chains in the Genus database with same CATH superfamily
1KH9A 4CYRA 1EW9A 2IUCB 1AJDA 4UPLA 4MIVA 1ALJA 3WAWA 4B56A 1ZEDA 2X98A 4LRAA 5GRRA 2GA3A 4CXSA 1EJJA 1ELYA 1FSUA 4LR8A 2W5TA 3SZZA 1O98A 2W5VA 4KAVA 4TN0A 2ANHA 1HJKA 1HQAA 3SZYA 1AJAA 4KJDA 5IJQA 5KXAA 3E2DA 2ZKTA 1KH7A 5LRMA 3T02A 2W5XA 3NKNA 3CMRA 3NKPA 3DPCA 4LQYA 3WAXA 2W5QA 1AJBA 3MK2A 1KHKA 1E33P 3A52A 3UO0A 4KJGA 3KD8A 1ED9A 5DLTA 1N2KA 2W8DA 5INHA 4KAYA 4CXUA 1ALIA 3LXQA 5GOVA 1Y7AA 3BDGB 4GTWA 5LIAA 1SHNA 5K4PA 5AJ9A 2QZUA 4UOPA 3T01A 3WAVA 3MK1A 2G9YA 3BDFA 1AUKA 1EI6A 3BDHA 5L0EA 2GLQA 3IDDA 1AJCA 1ZEBA 3MK0A 2W5WA 1KHJA 1ELXA 3IGYB 4UORA 3M8YA 4ZG6A 5L0KA 2W8SA 1KHLA 1ANIA 1ALKA 4LRBA 1ELZA 2GSUA 3Q3QA 3NKQA 5HRTA 5L0BA 2IUCA 4ZGAA 3T00A 3UN2A 3TX0A 3WAYA 4UPHA 1EQJA 4NWXA 1ZEFA 3NKMA 4GTXA 3TWZA 4ZG9A 5DLVA 4UPIA 2RH6A 4FDJA 1E1ZP 1E2SP 1Y6VA 4YR1A 1SHQA 4FDIA 4CYSA 1KHNA 3M8ZA 1O99A 2IFYA 5EGEA 3B5QA 3NKRA 1K7HA 4KM4A 1HDHA 1ALHA 1ANJA 3IGZB 3M8WA 4LRCA 5IJSA 4MHXA 2GSNA 2VQRA 1P49A 3ED4A 3UNYA 4CXKA 2XRGA 2W5SA 1EW2A 2XR9A 4LRFA 4N7TA 1N2LA 5C66A 3NKOA 5TJ3A 2W5RA 1KH5A 3TG0A 5DLWA 3WBHA 4UPKA 4GTYA 3BDGA 4UOOA 4ZG7A 2GSOA 5LQQA 1ED8A 4LRDA 1B8JA 1E3CP 1URBA 1URAA 3UN5A 3DYCA 4LR2A 4MY4A 4GTZA 3UN3A 4LREA 4NWJA 3NVLA 3M7VA 2D1GA 1EW8A 1KH4A 5EGHA 3OT9A 4QAXA 4LR9A 5LRNA 4LR7A
chains in the Genus database with same CATH topology
1KH9A 4CYRA 1EW9A 2IUCB 1AJDA 4UPLA 4MIVA 1ALJA 3WAWA 4B56A 1ZEDA 2X98A 4LRAA 5GRRA 2GA3A 4CXSA 1EJJA 1ELYA 1FSUA 4LR8A 2W5TA 3SZZA 1O98A 2W5VA 4KAVA 4TN0A 2ANHA 1HJKA 1HQAA 3SZYA 1AJAA 4KJDA 5IJQA 5KXAA 3E2DA 2ZKTA 1KH7A 5LRMA 3T02A 2W5XA 3NKNA 3CMRA 3NKPA 3DPCA 4LQYA 3WAXA 2W5QA 1AJBA 3MK2A 1KHKA 1E33P 3A52A 3UO0A 4KJGA 3KD8A 1ED9A 5DLTA 1N2KA 2W8DA 5INHA 4KAYA 4CXUA 1ALIA 3LXQA 5GOVA 1Y7AA 3BDGB 4GTWA 5LIAA 1SHNA 5K4PA 5AJ9A 2QZUA 4UOPA 3T01A 3WAVA 3MK1A 2G9YA 3BDFA 1AUKA 1EI6A 3BDHA 5L0EA 2GLQA 3IDDA 1AJCA 1ZEBA 3MK0A 2W5WA 1KHJA 1ELXA 3IGYB 4UORA 3M8YA 4ZG6A 5L0KA 2W8SA 1KHLA 1ANIA 1ALKA 4LRBA 1ELZA 2GSUA 3Q3QA 3NKQA 5HRTA 5L0BA 2IUCA 4ZGAA 3T00A 3UN2A 3TX0A 3WAYA 4UPHA 1EQJA 4NWXA 1ZEFA 3NKMA 4GTXA 3TWZA 4ZG9A 5DLVA 4UPIA 2RH6A 4FDJA 1E1ZP 1E2SP 1Y6VA 4YR1A 1SHQA 4FDIA 4CYSA 1KHNA 3M8ZA 1O99A 2IFYA 5EGEA 3B5QA 3NKRA 1K7HA 4KM4A 1HDHA 1ALHA 1ANJA 3IGZB 3M8WA 4LRCA 5IJSA 4MHXA 2GSNA 2VQRA 1P49A 3ED4A 3UNYA 4CXKA 2XRGA 2W5SA 1EW2A 2XR9A 4LRFA 4N7TA 1N2LA 5C66A 3NKOA 5TJ3A 2W5RA 1KH5A 3TG0A 5DLWA 3WBHA 4UPKA 4GTYA 3BDGA 4UOOA 4ZG7A 2GSOA 5LQQA 1ED8A 4LRDA 1B8JA 1E3CP 1URBA 1URAA 3UN5A 3DYCA 4LR2A 4MY4A 4GTZA 3UN3A 4LREA 4NWJA 3NVLA 3M7VA 2D1GA 1EW8A 1KH4A 5EGHA 3OT9A 4QAXA 4LR9A 5LRNA 4LR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KH9 A;  4CYR A;  1EW9 A;  2IUC B;  1AJD A;  4UPL A;  4MIV A;  1ALJ A;  3WAW A;  4B56 A;  1ZED A;  2X98 A;  4LRA A;  5GRR A;  2GA3 A;  4CXS A;  1EJJ A;  1ELY A;  1FSU A;  4LR8 A;  2W5T A;  3SZZ A;  1O98 A;  2W5V A;  4KAV A;  4TN0 A;  2ANH A;  1HJK A;  1HQA A;  3SZY A;  1AJA A;  4KJD A;  5IJQ A;  5KXA A;  3E2D A;  2ZKT A;  1KH7 A;  5LRM A;  3T02 A;  2W5X A;  3NKN A;  3CMR A;  3NKP A;  3DPC A;  4LQY A;  3WAX A;  2W5Q A;  1AJB A;  3MK2 A;  1KHK A;  1E33 P;  3A52 A;  3UO0 A;  4KJG A;  3KD8 A;  1ED9 A;  5DLT A;  1N2K A;  2W8D A;  5INH A;  4KAY A;  4CXU A;  1ALI A;  3LXQ A;  5GOV A;  1Y7A A;  3BDG B;  4GTW A;  5LIA A;  1SHN A;  5K4P A;  5AJ9 A;  2QZU A;  4UOP A;  3T01 A;  3WAV A;  3MK1 A;  2G9Y A;  3BDF A;  1AUK A;  1EI6 A;  3BDH A;  5L0E A;  2GLQ A;  3IDD A;  1AJC A;  1ZEB A;  3MK0 A;  2W5W A;  1KHJ A;  1ELX A;  3IGY B;  4UOR A;  3M8Y A;  4ZG6 A;  5L0K A;  2W8S A;  1KHL A;  1ANI A;  1ALK A;  4LRB A;  1ELZ A;  2GSU A;  3Q3Q A;  3NKQ A;  5HRT A;  5L0B A;  2IUC A;  4ZGA A;  3T00 A;  3UN2 A;  3TX0 A;  3WAY A;  4UPH A;  1EQJ A;  4NWX A;  1ZEF A;  3NKM A;  4GTX A;  3TWZ A;  4ZG9 A;  5DLV A;  4UPI A;  2RH6 A;  4FDJ A;  1E1Z P;  1E2S P;  1Y6V A;  4YR1 A;  1SHQ A;  4FDI A;  4CYS A;  1KHN A;  3M8Z A;  1O99 A;  2IFY A;  5EGE A;  3B5Q A;  3NKR A;  1K7H A;  4KM4 A;  1HDH A;  1ALH A;  1ANJ A;  3IGZ B;  3M8W A;  4LRC A;  5IJS A;  4MHX A;  2GSN A;  2VQR A;  1P49 A;  3ED4 A;  3UNY A;  4CXK A;  2XRG A;  2W5S A;  1EW2 A;  2XR9 A;  4LRF A;  4N7T A;  1N2L A;  5C66 A;  3NKO A;  5TJ3 A;  2W5R A;  1KH5 A;  3TG0 A;  5DLW A;  3WBH A;  4UPK A;  4GTY A;  3BDG A;  4UOO A;  4ZG7 A;  2GSO A;  5LQQ A;  1ED8 A;  4LRD A;  1B8J A;  1E3C P;  1URB A;  1URA A;  3UN5 A;  3DYC A;  4LR2 A;  4MY4 A;  4GTZ A;  3UN3 A;  4LRE A;  4NWJ A;  3NVL A;  3M7V A;  2D1G A;  1EW8 A;  1KH4 A;  5EGH A;  3OT9 A;  4QAX A;  4LR9 A;  5LRN A;  4LR7 A; 
#chains in the Genus database with same CATH topology
 1KH9 A;  4CYR A;  1EW9 A;  2IUC B;  1AJD A;  4UPL A;  4MIV A;  1ALJ A;  3WAW A;  4B56 A;  1ZED A;  2X98 A;  4LRA A;  5GRR A;  2GA3 A;  4CXS A;  1EJJ A;  1ELY A;  1FSU A;  4LR8 A;  2W5T A;  3SZZ A;  1O98 A;  2W5V A;  4KAV A;  4TN0 A;  2ANH A;  1HJK A;  1HQA A;  3SZY A;  1AJA A;  4KJD A;  5IJQ A;  5KXA A;  3E2D A;  2ZKT A;  1KH7 A;  5LRM A;  3T02 A;  2W5X A;  3NKN A;  3CMR A;  3NKP A;  3DPC A;  4LQY A;  3WAX A;  2W5Q A;  1AJB A;  3MK2 A;  1KHK A;  1E33 P;  3A52 A;  3UO0 A;  4KJG A;  3KD8 A;  1ED9 A;  5DLT A;  1N2K A;  2W8D A;  5INH A;  4KAY A;  4CXU A;  1ALI A;  3LXQ A;  5GOV A;  1Y7A A;  3BDG B;  4GTW A;  5LIA A;  1SHN A;  5K4P A;  5AJ9 A;  2QZU A;  4UOP A;  3T01 A;  3WAV A;  3MK1 A;  2G9Y A;  3BDF A;  1AUK A;  1EI6 A;  3BDH A;  5L0E A;  2GLQ A;  3IDD A;  1AJC A;  1ZEB A;  3MK0 A;  2W5W A;  1KHJ A;  1ELX A;  3IGY B;  4UOR A;  3M8Y A;  4ZG6 A;  5L0K A;  2W8S A;  1KHL A;  1ANI A;  1ALK A;  4LRB A;  1ELZ A;  2GSU A;  3Q3Q A;  3NKQ A;  5HRT A;  5L0B A;  2IUC A;  4ZGA A;  3T00 A;  3UN2 A;  3TX0 A;  3WAY A;  4UPH A;  1EQJ A;  4NWX A;  1ZEF A;  3NKM A;  4GTX A;  3TWZ A;  4ZG9 A;  5DLV A;  4UPI A;  2RH6 A;  4FDJ A;  1E1Z P;  1E2S P;  1Y6V A;  4YR1 A;  1SHQ A;  4FDI A;  4CYS A;  1KHN A;  3M8Z A;  1O99 A;  2IFY A;  5EGE A;  3B5Q A;  3NKR A;  1K7H A;  4KM4 A;  1HDH A;  1ALH A;  1ANJ A;  3IGZ B;  3M8W A;  4LRC A;  5IJS A;  4MHX A;  2GSN A;  2VQR A;  1P49 A;  3ED4 A;  3UNY A;  4CXK A;  2XRG A;  2W5S A;  1EW2 A;  2XR9 A;  4LRF A;  4N7T A;  1N2L A;  5C66 A;  3NKO A;  5TJ3 A;  2W5R A;  1KH5 A;  3TG0 A;  5DLW A;  3WBH A;  4UPK A;  4GTY A;  3BDG A;  4UOO A;  4ZG7 A;  2GSO A;  5LQQ A;  1ED8 A;  4LRD A;  1B8J A;  1E3C P;  1URB A;  1URA A;  3UN5 A;  3DYC A;  4LR2 A;  4MY4 A;  4GTZ A;  3UN3 A;  4LRE A;  4NWJ A;  3NVL A;  3M7V A;  2D1G A;  1EW8 A;  1KH4 A;  5EGH A;  3OT9 A;  4QAX A;  4LR9 A;  5LRN A;  4LR7 A; 
#chains in the Genus database with same CATH homology
 1KH9 A;  4CYR A;  1EW9 A;  2IUC B;  1AJD A;  4UPL A;  4MIV A;  1ALJ A;  3WAW A;  4B56 A;  1ZED A;  2X98 A;  4LRA A;  5GRR A;  2GA3 A;  4CXS A;  1EJJ A;  1ELY A;  1FSU A;  4LR8 A;  2W5T A;  3SZZ A;  1O98 A;  2W5V A;  4KAV A;  4TN0 A;  2ANH A;  1HJK A;  1HQA A;  3SZY A;  1AJA A;  4KJD A;  5IJQ A;  5KXA A;  3E2D A;  2ZKT A;  1KH7 A;  5LRM A;  3T02 A;  2W5X A;  3NKN A;  3CMR A;  3NKP A;  3DPC A;  4LQY A;  3WAX A;  2W5Q A;  1AJB A;  3MK2 A;  1KHK A;  1E33 P;  3A52 A;  3UO0 A;  4KJG A;  3KD8 A;  1ED9 A;  5DLT A;  1N2K A;  2W8D A;  5INH A;  4KAY A;  4CXU A;  1ALI A;  3LXQ A;  5GOV A;  1Y7A A;  3BDG B;  4GTW A;  5LIA A;  1SHN A;  5K4P A;  5AJ9 A;  2QZU A;  4UOP A;  3T01 A;  3WAV A;  3MK1 A;  2G9Y A;  3BDF A;  1AUK A;  1EI6 A;  3BDH A;  5L0E A;  2GLQ A;  3IDD A;  1AJC A;  1ZEB A;  3MK0 A;  2W5W A;  1KHJ A;  1ELX A;  3IGY B;  4UOR A;  3M8Y A;  4ZG6 A;  5L0K A;  2W8S A;  1KHL A;  1ANI A;  1ALK A;  4LRB A;  1ELZ A;  2GSU A;  3Q3Q A;  3NKQ A;  5HRT A;  5L0B A;  2IUC A;  4ZGA A;  3T00 A;  3UN2 A;  3TX0 A;  3WAY A;  4UPH A;  1EQJ A;  4NWX A;  1ZEF A;  3NKM A;  4GTX A;  3TWZ A;  4ZG9 A;  5DLV A;  4UPI A;  2RH6 A;  4FDJ A;  1E1Z P;  1E2S P;  1Y6V A;  4YR1 A;  1SHQ A;  4FDI A;  4CYS A;  1KHN A;  3M8Z A;  1O99 A;  2IFY A;  5EGE A;  3B5Q A;  3NKR A;  1K7H A;  4KM4 A;  1HDH A;  1ALH A;  1ANJ A;  3IGZ B;  3M8W A;  4LRC A;  5IJS A;  4MHX A;  2GSN A;  2VQR A;  1P49 A;  3ED4 A;  3UNY A;  4CXK A;  2XRG A;  2W5S A;  1EW2 A;  2XR9 A;  4LRF A;  4N7T A;  1N2L A;  5C66 A;  3NKO A;  5TJ3 A;  2W5R A;  1KH5 A;  3TG0 A;  5DLW A;  3WBH A;  4UPK A;  4GTY A;  3BDG A;  4UOO A;  4ZG7 A;  2GSO A;  5LQQ A;  1ED8 A;  4LRD A;  1B8J A;  1E3C P;  1URB A;  1URA A;  3UN5 A;  3DYC A;  4LR2 A;  4MY4 A;  4GTZ A;  3UN3 A;  4LRE A;  4NWJ A;  3NVL A;  3M7V A;  2D1G A;  1EW8 A;  1KH4 A;  5EGH A;  3OT9 A;  4QAX A;  4LR9 A;  5LRN A;  4LR7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...