4KDLA

Crystal structure of p97/vcp n in complex with otu1 ubxl
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
174
structure length
174
Chain Sequence
PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/hydrolase
molecule keywords Transitional endoplasmic reticulum ATPase
publication title Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
pubmed doi rcsb
source organism Homo sapiens
total genus 53
structure length 174
sequence length 174
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4kdlA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4kdlA02
3GTQA 2VPWA 3GTKA 1IW7D 2JA7A 5T5MD 3GTMA 4GA6A 2WAQA 3DMRA 2NYAA 2JIOA 3IR6A 3IR5A 3GTPA 1CZ4A 2YU9A 2KI8A 5FTMA 1AW8B 1TWAA 1WLFA 4RV0A 2JA5A 1YLEA 2JIPA 2R7ZA 2C45A 1TWCA 4KODA 1Y1VA 3GTGA 5EPPA 3QQ8A 2VUMA 3CF2A 3QC8A 1E5VA 4QIWA 1TWHA 1EU1A 1QCSA 1I3QA 5DYIA 3HU2A 1UHDA 1I50A 1ZC1A 2NVXA 2V3VA 3H0GA 4AZDA 2DMRA 1PT0A 1FDIA 1R7RA 2Y0SA 1K83A 1TWFA 4AONB 1H0HA 3ML1A 1CZ5A 1PYQA 3QWZA 2EEOB 1E60A 1TWGA 2VPYA 1E61A 4DMRA 2JIMA 1S3SA 2E7ZA 3HKZA 1VC3B 2PMZA 4CS0A 2VPZA 4D7ZB 2R92A 2E2IA 3HU1A 5FTKA 1R9TA 1PQEA 1PPYA 1Y4ZA 1R27A 4KO8A 4C2MA 1G8JA 1Y5IA 1G8KA 1SIWA 1TMOA 4KDIA 2R93A 2JIQA 5B6CA 3PLXB 2JV2A 3OUGA 2PJHB 2VPXA 1QDNA 3CQZA 4CRZA 2YUJA 4KDLA 1AA6A 2IV2X 5C18A 1PYUB 2JIRA 5T5ID 1KQFA 1PT1A 3GTJA 4CRYG 5GLFA 4AOKB 1DMRA 5DYGA 4AYBA 4KLNA 3QQ7A 3IR7A 3GTLA 1Q16A 1H5NA 2E2HA 5FTLA 1Y1WA 1PQHA 2V45A 1E32A 1DMSA 2JA6A 2NVYA 1WCMA 5FTNA 2B63A 3O5AA 4AAYA 3FKIA 5C1BA 4GA5A 1CR5A 3HU3A 1UHEA 5FTJA 3TIWA 3GTOA 1OGYA 2NAPA 1PQFA 3TM7B 1KQGA 1E18A 1SFOA 2WB1A 1FDOA
chains in the Genus database with same CATH superfamily
3SUMA 1YNJD 3SUKA 3GTQA 1YNND 2VPWA 3GTKA 3X2HA 1IW7D 2MM2A 2QQSA 3ENGA 4FG4A 4ZM7A 2JA7A 5T5MD 1WC2A 2PICA 2A6ED 3GTMA 4GA6A 5D6YA 2WAQA 3DMRA 2NYAA 2JIOA 3LGAA 3IR6A 3IR5A 3GTPA 1CZ4A 2YU9A 4JCWA 2KI8A 5FTMA 4FERA 2Q18X 3FPTA 1AW8B 1OA9A 1WLFA 1TWAA 4RV0A 5GM9A 3X2PA 2JA5A 1YLEA 5D6XA 2JIPA 4JP6A 2R7ZA 2C45A 1TWCA 4KODA 1Y1VA 3GTGA 5EPPA 3QQ8A 2VUMA 2G5DA 3CF2A 3QC8A 3X2GA 5D6WA 3FPUA 1BW3A 1HD5A 1E5VA 2BH0A 3FPRA 2CW0D 2Q1DX 4QIWA 1TWHA 5EQJB 1EU1A 1QCSA 1I3QA 5DYIA 3HU2A 2PWYA 1UHDA 1ZC1A 1SMYD 1I50A 2O5JD 2V3VA 3H0GA 2NVXA 5GLXA 4AZDA 2DMRA 3X2JA 1PT0A 1FDIA 5GLYA 3ZJVA 1R7RA 2BE5D 1L8FA 1TWFA 2Y0SA 1K83A 4UC4A 3M3GA 2KY9A 2GAEA 4AONB 1H0HA 3ML1A 2PNWA 1CZ5A 2QQRA 1PYQA 4ENGA 2MM0A 3QWZA 4ARCA 2AE0X 1OA7A 2EEOB 1E60A 1TWGA 2A6HD 2VPYA 2XDPA 3BQBA 1E61A 4JP7A 4DMRA 2GF7A 2JIMA 1S3SA 2E7ZA 2KQAA 3HKZA 2PI8A 1VC3B 2PMZA 4CS0A 2VPZA 4D7ZB 1O54A 2G6GA 3X2OA 3ZGZA 4NOHA 2R92A 4JS7A 2E2IA 3ZJUA 3HU1A 5FTKA 1R9TA 4AQ7A 1PQEA 1PPYA 1Y4ZA 1R27A 4KO8A 4C2MA 3ZJTA 1G8JA 4AS1A 2Q1CX 3CZBA 1I9GA 3X2MA 1Y5IA 1G8KA 3D30A 1SIWA 1TMOA 4JJOA 4KDIA 2R93A 2JIQA 5B6CA 3PLXB 2A68D 2JV2A 2PJJA 3OUGA 4FIBA 5H4UA 2PJHB 3X2KA 5CCXA 2VPXA 3SUJA 3X2NA 1QDNA 3CQZA 2YUJA 4CRZA 4KDLA 2LW6A 1AA6A 2Q1AX 2IV2X 5C18A 1PYUB 2JIRA 5T5ID 1KQFA 1N10A 1PT1A 4FG2A 3GTJA 4CRYG 2YVLA 5CCBA 4ARIA 5GLFA 4AOKB 1DMRA 5DYGA 3X2LA 4AYBA 1BW4A 3SULA 4KLNA 3QQ7A 3IR7A 4FFTA 3GTLA 1Q16A 1H5NA 2E2HA 5FTLA 2GFAA 3LHDA 1Y1WA 1PQHA 5ERGB 1E32A 2V45A 1ZYRD 1DMSA 2A69D 2HCZX 2NVYA 2JA6A 4CQNA 2ENGA 1WCMA 5FTNA 3MB5A 2B63A 4AVRA 3O5AA 4AAYA 3FKIA 5C1BA 5CD1A 4GA5A 1CR5A 3HU3A 1UHEA 5FTJA 3TIWA 3GTOA 1OGYA 2NAPA 2Q19X 1PQFA 3TM7B 3X2IA 1KQGA 1E18A 1SFOA 4L48A 2WB1A 1FDOA 2B25A
chains in the Genus database with same CATH topology
1YNJD 3GTQA 1YNND 2VPWA 3GTKA 1IW7D 2MM2A 2QQSA 2JA7A 5T5MD 2PICA 2A6ED 3GTMA 4GA6A 5D6YA 2WAQA 3DMRA 2NYAA 2JIOA 3LGAA 3IR6A 3IR5A 3GTPA 1CZ4A 2YU9A 2KI8A 5FTMA 2Q18X 3FPTA 1AW8B 1TWAA 1WLFA 4RV0A 2JA5A 1YLEA 5D6XA 2JIPA 2R7ZA 2C45A 1TWCA 4KODA 1Y1VA 3GTGA 5EPPA 3QQ8A 2VUMA 2G5DA 3CF2A 3QC8A 5D6WA 3FPUA 1E5VA 3FPRA 2CW0D 2Q1DX 4QIWA 1TWHA 5EQJB 1EU1A 1QCSA 1I3QA 5DYIA 3HU2A 2PWYA 1UHDA 1ZC1A 1SMYD 1I50A 2O5JD 2V3VA 3H0GA 2NVXA 4AZDA 2DMRA 1PT0A 1FDIA 3ZJVA 1R7RA 2BE5D 2Y0SA 1TWFA 1K83A 4UC4A 2KY9A 2GAEA 4AONB 1H0HA 3ML1A 2PNWA 1CZ5A 2QQRA 1PYQA 2MM0A 3QWZA 4ARCA 2AE0X 2EEOB 1E60A 1TWGA 2A6HD 2VPYA 2XDPA 3BQBA 1E61A 4DMRA 2GF7A 2JIMA 1S3SA 2E7ZA 3HKZA 2PI8A 1VC3B 2PMZA 4CS0A 2VPZA 4D7ZB 1O54A 2G6GA 3ZGZA 4NOHA 2R92A 2E2IA 3ZJUA 3HU1A 5FTKA 1R9TA 4AQ7A 1PQEA 1PPYA 1Y4ZA 1R27A 4KO8A 4C2MA 3ZJTA 1G8JA 4AS1A 2Q1CX 3CZBA 1I9GA 1Y5IA 1G8KA 1SIWA 1TMOA 4KDIA 2R93A 2JIQA 5B6CA 3PLXB 2A68D 2JV2A 2PJJA 3OUGA 4FIBA 2PJHB 5CCXA 2VPXA 2LW6A 1QDNA 3CQZA 2YUJA 4CRZA 4KDLA 2Q1AX 1AA6A 2IV2X 5C18A 1PYUB 2JIRA 5T5ID 1KQFA 1PT1A 3GTJA 4CRYG 2YVLA 5CCBA 4ARIA 5GLFA 4AOKB 1DMRA 5DYGA 4AYBA 4KLNA 3QQ7A 3IR7A 3GTLA 1Q16A 1H5NA 2E2HA 5FTLA 2GFAA 3LHDA 1Y1WA 1PQHA 5ERGB 1E32A 2V45A 1ZYRD 1DMSA 2A69D 2NVYA 2JA6A 4CQNA 3MB5A 1WCMA 5FTNA 2B63A 3O5AA 4AAYA 3FKIA 5C1BA 5CD1A 4GA5A 1CR5A 3HU3A 1UHEA 5FTJA 3TIWA 3GTOA 1OGYA 2NAPA 2Q19X 1PQFA 3TM7B 1KQGA 1E18A 1SFOA 2WB1A 1FDOA 2B25A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTQ A;  2VPW A;  3GTK A;  1IW7 D;  2JA7 A;  5T5M D;  3GTM A;  4GA6 A;  2WAQ A;  3DMR A;  2NYA A;  2JIO A;  3IR6 A;  3IR5 A;  3GTP A;  1CZ4 A;  2YU9 A;  2KI8 A;  5FTM A;  1AW8 B;  1TWA A;  1WLF A;  4RV0 A;  2JA5 A;  1YLE A;  2JIP A;  2R7Z A;  2C45 A;  1TWC A;  4KOD A;  1Y1V A;  3GTG A;  5EPP A;  3QQ8 A;  2VUM A;  3CF2 A;  3QC8 A;  1E5V A;  4QIW A;  1TWH A;  1EU1 A;  1QCS A;  1I3Q A;  5DYI A;  3HU2 A;  1UHD A;  1I50 A;  1ZC1 A;  2NVX A;  2V3V A;  3H0G A;  4AZD A;  2DMR A;  1PT0 A;  1FDI A;  1R7R A;  2Y0S A;  1K83 A;  1TWF A;  4AON B;  1H0H A;  3ML1 A;  1CZ5 A;  1PYQ A;  3QWZ A;  2EEO B;  1E60 A;  1TWG A;  2VPY A;  1E61 A;  4DMR A;  2JIM A;  1S3S A;  2E7Z A;  3HKZ A;  1VC3 B;  2PMZ A;  4CS0 A;  2VPZ A;  4D7Z B;  2R92 A;  2E2I A;  3HU1 A;  5FTK A;  1R9T A;  1PQE A;  1PPY A;  1Y4Z A;  1R27 A;  4KO8 A;  4C2M A;  1G8J A;  1Y5I A;  1G8K A;  1SIW A;  1TMO A;  4KDI A;  2R93 A;  2JIQ A;  5B6C A;  3PLX B;  2JV2 A;  3OUG A;  2PJH B;  2VPX A;  1QDN A;  3CQZ A;  4CRZ A;  2YUJ A;  4KDL A;  1AA6 A;  2IV2 X;  5C18 A;  1PYU B;  2JIR A;  5T5I D;  1KQF A;  1PT1 A;  3GTJ A;  4CRY G;  5GLF A;  4AOK B;  1DMR A;  5DYG A;  4AYB A;  4KLN A;  3QQ7 A;  3IR7 A;  3GTL A;  1Q16 A;  1H5N A;  2E2H A;  5FTL A;  1Y1W A;  1PQH A;  2V45 A;  1E32 A;  1DMS A;  2JA6 A;  2NVY A;  1WCM A;  5FTN A;  2B63 A;  3O5A A;  4AAY A;  3FKI A;  5C1B A;  4GA5 A;  1CR5 A;  3HU3 A;  1UHE A;  5FTJ A;  3TIW A;  3GTO A;  1OGY A;  2NAP A;  1PQF A;  3TM7 B;  1KQG A;  1E18 A;  1SFO A;  2WB1 A;  1FDO A; 
#chains in the Genus database with same CATH topology
 3SUM A;  1YNJ D;  3SUK A;  3GTQ A;  1YNN D;  2VPW A;  3GTK A;  3X2H A;  1IW7 D;  2MM2 A;  2QQS A;  3ENG A;  4FG4 A;  4ZM7 A;  2JA7 A;  5T5M D;  1WC2 A;  2PIC A;  2A6E D;  3GTM A;  4GA6 A;  5D6Y A;  2WAQ A;  3DMR A;  2NYA A;  2JIO A;  3LGA A;  3IR6 A;  3IR5 A;  3GTP A;  1CZ4 A;  2YU9 A;  4JCW A;  2KI8 A;  5FTM A;  4FER A;  2Q18 X;  3FPT A;  1AW8 B;  1OA9 A;  1WLF A;  1TWA A;  4RV0 A;  5GM9 A;  3X2P A;  2JA5 A;  1YLE A;  5D6X A;  2JIP A;  4JP6 A;  2R7Z A;  2C45 A;  1TWC A;  4KOD A;  1Y1V A;  3GTG A;  5EPP A;  3QQ8 A;  2VUM A;  2G5D A;  3CF2 A;  3QC8 A;  3X2G A;  5D6W A;  3FPU A;  1BW3 A;  1HD5 A;  1E5V A;  2BH0 A;  3FPR A;  2CW0 D;  2Q1D X;  4QIW A;  1TWH A;  5EQJ B;  1EU1 A;  1QCS A;  1I3Q A;  5DYI A;  3HU2 A;  2PWY A;  1UHD A;  1ZC1 A;  1SMY D;  1I50 A;  2O5J D;  2V3V A;  3H0G A;  2NVX A;  5GLX A;  4AZD A;  2DMR A;  3X2J A;  1PT0 A;  1FDI A;  5GLY A;  3ZJV A;  1R7R A;  2BE5 D;  1L8F A;  1TWF A;  2Y0S A;  1K83 A;  4UC4 A;  3M3G A;  2KY9 A;  2GAE A;  4AON B;  1H0H A;  3ML1 A;  2PNW A;  1CZ5 A;  2QQR A;  1PYQ A;  4ENG A;  2MM0 A;  3QWZ A;  4ARC A;  2AE0 X;  1OA7 A;  2EEO B;  1E60 A;  1TWG A;  2A6H D;  2VPY A;  2XDP A;  3BQB A;  1E61 A;  4JP7 A;  4DMR A;  2GF7 A;  2JIM A;  1S3S A;  2E7Z A;  2KQA A;  3HKZ A;  2PI8 A;  1VC3 B;  2PMZ A;  4CS0 A;  2VPZ A;  4D7Z B;  1O54 A;  2G6G A;  3X2O A;  3ZGZ A;  4NOH A;  2R92 A;  4JS7 A;  2E2I A;  3ZJU A;  3HU1 A;  5FTK A;  1R9T A;  4AQ7 A;  1PQE A;  1PPY A;  1Y4Z A;  1R27 A;  4KO8 A;  4C2M A;  3ZJT A;  1G8J A;  4AS1 A;  2Q1C X;  3CZB A;  1I9G A;  3X2M A;  1Y5I A;  1G8K A;  3D30 A;  1SIW A;  1TMO A;  4JJO A;  4KDI A;  2R93 A;  2JIQ A;  5B6C A;  3PLX B;  2A68 D;  2JV2 A;  2PJJ A;  3OUG A;  4FIB A;  5H4U A;  2PJH B;  3X2K A;  5CCX A;  2VPX A;  3SUJ A;  3X2N A;  1QDN A;  3CQZ A;  2YUJ A;  4CRZ A;  4KDL A;  2LW6 A;  1AA6 A;  2Q1A X;  2IV2 X;  5C18 A;  1PYU B;  2JIR A;  5T5I D;  1KQF A;  1N10 A;  1PT1 A;  4FG2 A;  3GTJ A;  4CRY G;  2YVL A;  5CCB A;  4ARI A;  5GLF A;  4AOK B;  1DMR A;  5DYG A;  3X2L A;  4AYB A;  1BW4 A;  3SUL A;  4KLN A;  3QQ7 A;  3IR7 A;  4FFT A;  3GTL A;  1Q16 A;  1H5N A;  2E2H A;  5FTL A;  2GFA A;  3LHD A;  1Y1W A;  1PQH A;  5ERG B;  1E32 A;  2V45 A;  1ZYR D;  1DMS A;  2A69 D;  2HCZ X;  2NVY A;  2JA6 A;  4CQN A;  2ENG A;  1WCM A;  5FTN A;  3MB5 A;  2B63 A;  4AVR A;  3O5A A;  4AAY A;  3FKI A;  5C1B A;  5CD1 A;  4GA5 A;  1CR5 A;  3HU3 A;  1UHE A;  5FTJ A;  3TIW A;  3GTO A;  1OGY A;  2NAP A;  2Q19 X;  1PQF A;  3TM7 B;  3X2I A;  1KQG A;  1E18 A;  1SFO A;  4L48 A;  2WB1 A;  1FDO A;  2B25 A; 
#chains in the Genus database with same CATH homology
 1YNJ D;  3GTQ A;  1YNN D;  2VPW A;  3GTK A;  1IW7 D;  2MM2 A;  2QQS A;  2JA7 A;  5T5M D;  2PIC A;  2A6E D;  3GTM A;  4GA6 A;  5D6Y A;  2WAQ A;  3DMR A;  2NYA A;  2JIO A;  3LGA A;  3IR6 A;  3IR5 A;  3GTP A;  1CZ4 A;  2YU9 A;  2KI8 A;  5FTM A;  2Q18 X;  3FPT A;  1AW8 B;  1TWA A;  1WLF A;  4RV0 A;  2JA5 A;  1YLE A;  5D6X A;  2JIP A;  2R7Z A;  2C45 A;  1TWC A;  4KOD A;  1Y1V A;  3GTG A;  5EPP A;  3QQ8 A;  2VUM A;  2G5D A;  3CF2 A;  3QC8 A;  5D6W A;  3FPU A;  1E5V A;  3FPR A;  2CW0 D;  2Q1D X;  4QIW A;  1TWH A;  5EQJ B;  1EU1 A;  1QCS A;  1I3Q A;  5DYI A;  3HU2 A;  2PWY A;  1UHD A;  1ZC1 A;  1SMY D;  1I50 A;  2O5J D;  2V3V A;  3H0G A;  2NVX A;  4AZD A;  2DMR A;  1PT0 A;  1FDI A;  3ZJV A;  1R7R A;  2BE5 D;  2Y0S A;  1TWF A;  1K83 A;  4UC4 A;  2KY9 A;  2GAE A;  4AON B;  1H0H A;  3ML1 A;  2PNW A;  1CZ5 A;  2QQR A;  1PYQ A;  2MM0 A;  3QWZ A;  4ARC A;  2AE0 X;  2EEO B;  1E60 A;  1TWG A;  2A6H D;  2VPY A;  2XDP A;  3BQB A;  1E61 A;  4DMR A;  2GF7 A;  2JIM A;  1S3S A;  2E7Z A;  3HKZ A;  2PI8 A;  1VC3 B;  2PMZ A;  4CS0 A;  2VPZ A;  4D7Z B;  1O54 A;  2G6G A;  3ZGZ A;  4NOH A;  2R92 A;  2E2I A;  3ZJU A;  3HU1 A;  5FTK A;  1R9T A;  4AQ7 A;  1PQE A;  1PPY A;  1Y4Z A;  1R27 A;  4KO8 A;  4C2M A;  3ZJT A;  1G8J A;  4AS1 A;  2Q1C X;  3CZB A;  1I9G A;  1Y5I A;  1G8K A;  1SIW A;  1TMO A;  4KDI A;  2R93 A;  2JIQ A;  5B6C A;  3PLX B;  2A68 D;  2JV2 A;  2PJJ A;  3OUG A;  4FIB A;  2PJH B;  5CCX A;  2VPX A;  2LW6 A;  1QDN A;  3CQZ A;  2YUJ A;  4CRZ A;  4KDL A;  2Q1A X;  1AA6 A;  2IV2 X;  5C18 A;  1PYU B;  2JIR A;  5T5I D;  1KQF A;  1PT1 A;  3GTJ A;  4CRY G;  2YVL A;  5CCB A;  4ARI A;  5GLF A;  4AOK B;  1DMR A;  5DYG A;  4AYB A;  4KLN A;  3QQ7 A;  3IR7 A;  3GTL A;  1Q16 A;  1H5N A;  2E2H A;  5FTL A;  2GFA A;  3LHD A;  1Y1W A;  1PQH A;  5ERG B;  1E32 A;  2V45 A;  1ZYR D;  1DMS A;  2A69 D;  2NVY A;  2JA6 A;  4CQN A;  3MB5 A;  1WCM A;  5FTN A;  2B63 A;  3O5A A;  4AAY A;  3FKI A;  5C1B A;  5CD1 A;  4GA5 A;  1CR5 A;  3HU3 A;  1UHE A;  5FTJ A;  3TIW A;  3GTO A;  1OGY A;  2NAP A;  2Q19 X;  1PQF A;  3TM7 B;  1KQG A;  1E18 A;  1SFO A;  2WB1 A;  1FDO A;  2B25 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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