4KEFA

Structure of cofilin mutant (cof1-159p)
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
139
structure length
133
Chain Sequence
GSRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYAIYDFEYEKRSDIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVSRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin binding protein
molecule keywords Cofilin
publication title Structure of Cofilin Mutant (cof1-159p)
rcsb
source organism Saccharomyces cerevisiae
total genus 39
structure length 133
sequence length 139
ec nomenclature
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 4kefA00
3FG6A 3FG7A 1M4JA 1SVYA 2QTVA 5A1MA 3EH1A 1ESVS 3EGDB 1JHWA 3EG9B 3A5MS 5KYUB 4PKHB 4JD2H 2MOTA 1UDMA 1AHQA 1SVQA 5HVKD 1CNUA 3EH2A 4KEEA 4Z94G 1PD1A 1NMDG 1RGIG 5KYYA 1QPVA 2LJ8A 1Q8XA 1MDUA 1AK6A 1WM4A 1PCXA 3FFNA 5KYWA 4BEX1 2NUPB 3CI5G 1TVJA 5KYXA 2MP4A 2LXXA 1D0NA 2NUTB 2FF6G 3EFOB 2FH1A 1WNJA 2FH4A 5KYNA 1M2OA 1F7SA 5DD2A 2FH3A 1CFYA 1KCQA 2XF1A 2KVKA 1VKKA 2I2QA 3EGXA 1COFA 1YVNG 2W0IA 1V6FA 1M2VA 1C0FS 5IVUA 1NM1G 2L72A 3DAWB 3A5NS 4PKIG 1H1VG 5L6WC 2LLFA 1T3YA 1P8XA 2VIKA 3CJBG 3L50A 5KYYB 1P8ZG 4PKGG 1AK7A 5KYWB 2D8BA 1EQYS 2VACA 3A5LS 5KYXB 3FFKA 1D4XG 1HQZ1 3CIPG 4KEFA 2MV2A 1PD0A 5FAFA 1T44G 3EGDA 4CBWG 3EG9A 5KYUA 2FF3A 1J72A 1DEJS 3EGXB 2FGHA 1C0GS 1NPHA 2HD7A 2VILA 4LIZA 5HVKB 4S10C 1M2VB 2XFAA 1SVRA 1X67A 2FH2A 1YAGG 1T2LA 1VFQA 1TMWA 4KEDA 2NUPA 3Q2BA 1NLVG 4CBUG 3A5OS 1WFSA 1Q8GA 3TU5B 2NUTA 3EFOA 1T3XA 4CBXG 5FAEA 3CJCG
chains in the Genus database with same CATH superfamily
3FG6A 3FG7A 1M4JA 1SVYA 2QTVA 5A1MA 3EH1A 1ESVS 3EGDB 1JHWA 3EG9B 3A5MS 5KYUB 4PKHB 4JD2H 2MOTA 1UDMA 1AHQA 1SVQA 5HVKD 1CNUA 3EH2A 4KEEA 4Z94G 1PD1A 1NMDG 1RGIG 5KYYA 1QPVA 2LJ8A 1Q8XA 1MDUA 1AK6A 1WM4A 1PCXA 3FFNA 5KYWA 4BEX1 2NUPB 3CI5G 1TVJA 5KYXA 2MP4A 2LXXA 1D0NA 2NUTB 2FF6G 3EFOB 2FH1A 1WNJA 2FH4A 5KYNA 1M2OA 1F7SA 5DD2A 2FH3A 1CFYA 1KCQA 2XF1A 2KVKA 1VKKA 2I2QA 3EGXA 1COFA 1YVNG 2W0IA 1V6FA 1M2VA 1C0FS 5IVUA 1NM1G 2L72A 3DAWB 3A5NS 4PKIG 1H1VG 5L6WC 2LLFA 1T3YA 1P8XA 2VIKA 3CJBG 3L50A 5KYYB 1P8ZG 4PKGG 1AK7A 5KYWB 2D8BA 1EQYS 2VACA 3A5LS 5KYXB 3FFKA 1D4XG 1HQZ1 3CIPG 4KEFA 2MV2A 1PD0A 5FAFA 1T44G 3EGDA 4CBWG 3EG9A 5KYUA 2FF3A 1J72A 1DEJS 3EGXB 2FGHA 1C0GS 1NPHA 2HD7A 2VILA 4LIZA 3DA7A 5HVKB 4S10C 1M2VB 2XFAA 1SVRA 1X67A 2FH2A 1YAGG 1T2LA 1VFQA 1TMWA 4KEDA 2NUPA 3Q2BA 1NLVG 4CBUG 3A5OS 1WFSA 1Q8GA 3TU5B 2NUTA 3EFOA 1T3XA 4CBXG 5FAEA 3CJCG
chains in the Genus database with same CATH topology
3FG6A 3FG7A 1M4JA 1SVYA 2QTVA 5A1MA 3EH1A 1ESVS 3EGDB 1JHWA 3EG9B 3A5MS 5KYUB 4PKHB 4JD2H 2MOTA 1UDMA 1AHQA 1SVQA 5HVKD 1CNUA 3EH2A 4KEEA 4Z94G 1PD1A 1NMDG 1RGIG 5KYYA 1QPVA 2LJ8A 1Q8XA 1MDUA 1AK6A 1WM4A 1PCXA 3FFNA 5KYWA 4BEX1 2NUPB 3CI5G 1TVJA 5KYXA 2MP4A 2LXXA 1D0NA 2NUTB 2FF6G 3EFOB 2FH1A 1WNJA 2FH4A 5KYNA 1M2OA 1F7SA 5DD2A 2FH3A 1CFYA 1KCQA 2XF1A 2KVKA 1VKKA 2I2QA 3EGXA 1COFA 1YVNG 2W0IA 1V6FA 1M2VA 1C0FS 5IVUA 1NM1G 2L72A 3DAWB 3A5NS 4PKIG 1H1VG 5L6WC 2LLFA 1T3YA 1P8XA 2VIKA 3CJBG 3L50A 5KYYB 1P8ZG 4PKGG 1AK7A 5KYWB 2D8BA 1EQYS 2VACA 3A5LS 5KYXB 3FFKA 1D4XG 1HQZ1 3CIPG 4KEFA 2MV2A 1PD0A 5FAFA 1T44G 3EGDA 4CBWG 3EG9A 5KYUA 2FF3A 1J72A 1DEJS 3EGXB 2FGHA 1C0GS 1NPHA 2HD7A 2VILA 4LIZA 3DA7A 5HVKB 4S10C 1M2VB 2XFAA 1SVRA 1X67A 2FH2A 1YAGG 1T2LA 1VFQA 1TMWA 4KEDA 2NUPA 3Q2BA 1NLVG 4CBUG 3A5OS 1WFSA 1Q8GA 3TU5B 2NUTA 3EFOA 1T3XA 4CBXG 5FAEA 3CJCG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FG6 A;  3FG7 A;  1M4J A;  1SVY A;  2QTV A;  5A1M A;  3EH1 A;  1ESV S;  3EGD B;  1JHW A;  3EG9 B;  3A5M S;  5KYU B;  4PKH B;  4JD2 H;  2MOT A;  1UDM A;  1AHQ A;  1SVQ A;  5HVK D;  1CNU A;  3EH2 A;  4KEE A;  4Z94 G;  1PD1 A;  1NMD G;  1RGI G;  5KYY A;  1QPV A;  2LJ8 A;  1Q8X A;  1MDU A;  1AK6 A;  1WM4 A;  1PCX A;  3FFN A;  5KYW A;  4BEX 1;  2NUP B;  3CI5 G;  1TVJ A;  5KYX A;  2MP4 A;  2LXX A;  1D0N A;  2NUT B;  2FF6 G;  3EFO B;  2FH1 A;  1WNJ A;  2FH4 A;  5KYN A;  1M2O A;  1F7S A;  5DD2 A;  2FH3 A;  1CFY A;  1KCQ A;  2XF1 A;  2KVK A;  1VKK A;  2I2Q A;  3EGX A;  1COF A;  1YVN G;  2W0I A;  1V6F A;  1M2V A;  1C0F S;  5IVU A;  1NM1 G;  2L72 A;  3DAW B;  3A5N S;  4PKI G;  1H1V G;  5L6W C;  2LLF A;  1T3Y A;  1P8X A;  2VIK A;  3CJB G;  3L50 A;  5KYY B;  1P8Z G;  4PKG G;  1AK7 A;  5KYW B;  2D8B A;  1EQY S;  2VAC A;  3A5L S;  5KYX B;  3FFK A;  1D4X G;  1HQZ 1;  3CIP G;  4KEF A;  2MV2 A;  1PD0 A;  5FAF A;  1T44 G;  3EGD A;  4CBW G;  3EG9 A;  5KYU A;  2FF3 A;  1J72 A;  1DEJ S;  3EGX B;  2FGH A;  1C0G S;  1NPH A;  2HD7 A;  2VIL A;  4LIZ A;  5HVK B;  4S10 C;  1M2V B;  2XFA A;  1SVR A;  1X67 A;  2FH2 A;  1YAG G;  1T2L A;  1VFQ A;  1TMW A;  4KED A;  2NUP A;  3Q2B A;  1NLV G;  4CBU G;  3A5O S;  1WFS A;  1Q8G A;  3TU5 B;  2NUT A;  3EFO A;  1T3X A;  4CBX G;  5FAE A;  3CJC G; 
#chains in the Genus database with same CATH topology
 3FG6 A;  3FG7 A;  1M4J A;  1SVY A;  2QTV A;  5A1M A;  3EH1 A;  1ESV S;  3EGD B;  1JHW A;  3EG9 B;  3A5M S;  5KYU B;  4PKH B;  4JD2 H;  2MOT A;  1UDM A;  1AHQ A;  1SVQ A;  5HVK D;  1CNU A;  3EH2 A;  4KEE A;  4Z94 G;  1PD1 A;  1NMD G;  1RGI G;  5KYY A;  1QPV A;  2LJ8 A;  1Q8X A;  1MDU A;  1AK6 A;  1WM4 A;  1PCX A;  3FFN A;  5KYW A;  4BEX 1;  2NUP B;  3CI5 G;  1TVJ A;  5KYX A;  2MP4 A;  2LXX A;  1D0N A;  2NUT B;  2FF6 G;  3EFO B;  2FH1 A;  1WNJ A;  2FH4 A;  5KYN A;  1M2O A;  1F7S A;  5DD2 A;  2FH3 A;  1CFY A;  1KCQ A;  2XF1 A;  2KVK A;  1VKK A;  2I2Q A;  3EGX A;  1COF A;  1YVN G;  2W0I A;  1V6F A;  1M2V A;  1C0F S;  5IVU A;  1NM1 G;  2L72 A;  3DAW B;  3A5N S;  4PKI G;  1H1V G;  5L6W C;  2LLF A;  1T3Y A;  1P8X A;  2VIK A;  3CJB G;  3L50 A;  5KYY B;  1P8Z G;  4PKG G;  1AK7 A;  5KYW B;  2D8B A;  1EQY S;  2VAC A;  3A5L S;  5KYX B;  3FFK A;  1D4X G;  1HQZ 1;  3CIP G;  4KEF A;  2MV2 A;  1PD0 A;  5FAF A;  1T44 G;  3EGD A;  4CBW G;  3EG9 A;  5KYU A;  2FF3 A;  1J72 A;  1DEJ S;  3EGX B;  2FGH A;  1C0G S;  1NPH A;  2HD7 A;  2VIL A;  4LIZ A;  3DA7 A;  5HVK B;  4S10 C;  1M2V B;  2XFA A;  1SVR A;  1X67 A;  2FH2 A;  1YAG G;  1T2L A;  1VFQ A;  1TMW A;  4KED A;  2NUP A;  3Q2B A;  1NLV G;  4CBU G;  3A5O S;  1WFS A;  1Q8G A;  3TU5 B;  2NUT A;  3EFO A;  1T3X A;  4CBX G;  5FAE A;  3CJC G; 
#chains in the Genus database with same CATH homology
 3FG6 A;  3FG7 A;  1M4J A;  1SVY A;  2QTV A;  5A1M A;  3EH1 A;  1ESV S;  3EGD B;  1JHW A;  3EG9 B;  3A5M S;  5KYU B;  4PKH B;  4JD2 H;  2MOT A;  1UDM A;  1AHQ A;  1SVQ A;  5HVK D;  1CNU A;  3EH2 A;  4KEE A;  4Z94 G;  1PD1 A;  1NMD G;  1RGI G;  5KYY A;  1QPV A;  2LJ8 A;  1Q8X A;  1MDU A;  1AK6 A;  1WM4 A;  1PCX A;  3FFN A;  5KYW A;  4BEX 1;  2NUP B;  3CI5 G;  1TVJ A;  5KYX A;  2MP4 A;  2LXX A;  1D0N A;  2NUT B;  2FF6 G;  3EFO B;  2FH1 A;  1WNJ A;  2FH4 A;  5KYN A;  1M2O A;  1F7S A;  5DD2 A;  2FH3 A;  1CFY A;  1KCQ A;  2XF1 A;  2KVK A;  1VKK A;  2I2Q A;  3EGX A;  1COF A;  1YVN G;  2W0I A;  1V6F A;  1M2V A;  1C0F S;  5IVU A;  1NM1 G;  2L72 A;  3DAW B;  3A5N S;  4PKI G;  1H1V G;  5L6W C;  2LLF A;  1T3Y A;  1P8X A;  2VIK A;  3CJB G;  3L50 A;  5KYY B;  1P8Z G;  4PKG G;  1AK7 A;  5KYW B;  2D8B A;  1EQY S;  2VAC A;  3A5L S;  5KYX B;  3FFK A;  1D4X G;  1HQZ 1;  3CIP G;  4KEF A;  2MV2 A;  1PD0 A;  5FAF A;  1T44 G;  3EGD A;  4CBW G;  3EG9 A;  5KYU A;  2FF3 A;  1J72 A;  1DEJ S;  3EGX B;  2FGH A;  1C0G S;  1NPH A;  2HD7 A;  2VIL A;  4LIZ A;  3DA7 A;  5HVK B;  4S10 C;  1M2V B;  2XFA A;  1SVR A;  1X67 A;  2FH2 A;  1YAG G;  1T2L A;  1VFQ A;  1TMW A;  4KED A;  2NUP A;  3Q2B A;  1NLV G;  4CBU G;  3A5O S;  1WFS A;  1Q8G A;  3TU5 B;  2NUT A;  3EFO A;  1T3X A;  4CBX G;  5FAE A;  3CJC G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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