4KJGA

Structure of rat intestinal alkaline phosphatase expressed in insect cell
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
Knots found
sequence length
486
structure length
486
Chain Sequence
VIPVEEENPVFWNQKAKEALDVAKKLQPIQTSAKNLILFLGDGMGVPTVTATRILKGQLGGHLGPETPLAMDHFPFTALSKTYNVDRQVPDSAGTATAYLCGVKANYKTIGVSAAARFNQCNSTFGNEVFSVMHRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRDWYSDADMPSSALQEGCKDIATQLISNMDIDVILGGGRKFMFPKGTPDPEYPGDSDQSGVRLDSRNLVEEWLAKYQGTRYVWNREQLMQASQDPAVTRLMGLFEPTEMKYDVNRNASADPSLAEMTEVAVRLLSRNPQGFYLFVEGGRIDQGHHAGTAYLALTEAVMFDSAIEKASQLTNEKDTLTLITADHSHVFAFGGYTLRGTSIFGLAPLNAQDGKSYTSILYGNGPGYVLNSGNRPNVTDAESGDVNYKQQAAVPLSSETHGGEDVAIFARGPQAHLVHGVQEQNYIAHVMAFAGCLEPYTDCGLAPPADEHHHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Intestinal-type alkaline phosphatase 1
publication title Crystal structure of rat intestinal alkaline phosphatase - Role of crown domain in mammalian alkaline phosphatases.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 174
structure length 486
sequence length 486
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2013-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kjgA00
3M7VA 4ZG7A 1KH9A 5IJQA 3BDHA 4YR1A 5HRTA 3M8ZA 1ED8A 3NKMA 5DLWA 5L0BA 3TX0A 1E3CP 5L0EA 4ZG6A 4CXKA 1E2SP 3DYCA 3WAVA 4LR8A 1ANJA 5KXAA 4MIVA 1AJBA 2GLQA 1O99A 3NKNA 1AJAA 3T00A 3TWZA 1HDHA 2ANHA 2IUCB 3NVLA 3UO0A 1EW2A 4LRCA 2W8SA 4LRAA 4N7TA 3SZZA 3TG0A 1KHNA 5LIAA 3BDGB 5INHA 3WAWA 4CYSA 1ED9A 1KHKA 4KJDA 3UNYA 3NKOA 3WAYA 1HQAA 4UOPA 4GTWA 5AJ9A 1ALJA 4KJGA 3ED4A 5LQQA 1AJDA 1ELZA 1K7HA 5IJSA 3IGZB 1HJKA 3Q3QA 3UN2A 3LXQA 4LQYA 1P49A 4KAVA 4FDIA 2RH6A 4MY4A 1ANIA 4UPIA 1KHLA 1SHQA 1KH5A 3T01A 3WBHA 2GSOA 4CXUA 2ZKTA 4LR9A 5LRNA 4MHXA 3NKRA 3T02A 1ALHA 1ZEDA 3KD8A 1SHNA 1ZEBA 3M8YA 2XRGA 1EQJA 5DLTA 5K4PA 1Y7AA 2GSNA 1AJCA 3NKPA 3UN3A 2GSUA 4GTZA 1EJJA 1KHJA 1KH4A 3CMRA 3UN5A 3DPCA 3B5QA 5EGEA 4GTYA 1N2KA 3SZYA 2IUCA 1ALIA 2W5VA 4UPLA 2G9YA 1FSUA 1ZEFA 1URBA 4LRDA 1KH7A 4UORA 4UPHA 3BDGA 5LRMA 4LR2A 1B8JA 2W8DA 3OT9A 4NWJA 5GOVA 3A52A 4ZG9A 3IGYB 1ELXA 2W5WA 2W5XA 1Y6VA 2W5QA 1EW8A 1EW9A 4GTXA 4TN0A 5EGHA 4UOOA 5DLVA 1ELYA 4NWXA 1E33P 3IDDA 4LREA 2W5SA 3MK0A 4LRFA 3MK2A 2VQRA 1ALKA 4LRBA 2QZUA 3MK1A 1E1ZP 5GRRA 2W5RA 5TJ3A 4KAYA 5C66A 1AUKA 2XR9A 1N2LA 1URAA 2D1GA 4FDJA 2W5TA 4KM4A 2X98A 2GA3A 4B56A 4QAXA 2IFYA 3BDFA 1O98A 4CXSA 1EI6A 3E2DA 4UPKA 3WAXA 4CYRA 3NKQA 5L0KA 3M8WA 4ZGAA 4LR7A
chains in the Genus database with same CATH superfamily
3M7VA 4ZG7A 1KH9A 5IJQA 3BDHA 4YR1A 5HRTA 3M8ZA 1ED8A 3NKMA 5DLWA 5L0BA 3TX0A 1E3CP 5L0EA 4ZG6A 4CXKA 1E2SP 3DYCA 3WAVA 4LR8A 1ANJA 5KXAA 4MIVA 1AJBA 2GLQA 1O99A 3NKNA 1AJAA 3T00A 3TWZA 1HDHA 2ANHA 2IUCB 3NVLA 3UO0A 1EW2A 4LRCA 2W8SA 4LRAA 4N7TA 3SZZA 3TG0A 1KHNA 5LIAA 3BDGB 5INHA 3WAWA 4CYSA 1ED9A 1KHKA 4KJDA 3UNYA 3NKOA 3WAYA 1HQAA 4UOPA 4GTWA 5AJ9A 1ALJA 4KJGA 3ED4A 5LQQA 1AJDA 1ELZA 1K7HA 5IJSA 3IGZB 1HJKA 3Q3QA 3UN2A 3LXQA 4LQYA 1P49A 4KAVA 4FDIA 2RH6A 4MY4A 1ANIA 4UPIA 1KHLA 1SHQA 1KH5A 3T01A 3WBHA 2GSOA 4CXUA 2ZKTA 4LR9A 5LRNA 4MHXA 3NKRA 3T02A 1ALHA 1ZEDA 3KD8A 1SHNA 1ZEBA 3M8YA 2XRGA 1EQJA 5DLTA 5K4PA 1Y7AA 2GSNA 1AJCA 3NKPA 3UN3A 2GSUA 4GTZA 1EJJA 1KHJA 1KH4A 3CMRA 3UN5A 3DPCA 3B5QA 5EGEA 4GTYA 1N2KA 3SZYA 2IUCA 1ALIA 2W5VA 4UPLA 2G9YA 1FSUA 1ZEFA 1URBA 4LRDA 1KH7A 4UORA 4UPHA 3BDGA 5LRMA 4LR2A 1B8JA 2W8DA 3OT9A 4NWJA 5GOVA 3A52A 4ZG9A 3IGYB 1ELXA 2W5WA 2W5XA 1Y6VA 2W5QA 1EW8A 1EW9A 4GTXA 4TN0A 5EGHA 4UOOA 5DLVA 1ELYA 4NWXA 1E33P 3IDDA 4LREA 2W5SA 3MK0A 4LRFA 3MK2A 2VQRA 1ALKA 4LRBA 2QZUA 3MK1A 1E1ZP 5GRRA 2W5RA 5TJ3A 4KAYA 5C66A 1AUKA 2XR9A 1N2LA 1URAA 2D1GA 4FDJA 2W5TA 4KM4A 2X98A 2GA3A 4B56A 4QAXA 2IFYA 3BDFA 1O98A 4CXSA 1EI6A 3E2DA 4UPKA 3WAXA 4CYRA 3NKQA 5L0KA 3M8WA 4ZGAA 4LR7A
chains in the Genus database with same CATH topology
3M7VA 4ZG7A 1KH9A 5IJQA 3BDHA 4YR1A 5HRTA 3M8ZA 1ED8A 3NKMA 5DLWA 5L0BA 3TX0A 1E3CP 5L0EA 4ZG6A 4CXKA 1E2SP 3DYCA 3WAVA 4LR8A 1ANJA 5KXAA 4MIVA 1AJBA 2GLQA 1O99A 3NKNA 1AJAA 3T00A 3TWZA 1HDHA 2ANHA 2IUCB 3NVLA 3UO0A 1EW2A 4LRCA 2W8SA 4LRAA 4N7TA 3SZZA 3TG0A 1KHNA 5LIAA 3BDGB 5INHA 3WAWA 4CYSA 1ED9A 1KHKA 4KJDA 3UNYA 3NKOA 3WAYA 1HQAA 4UOPA 4GTWA 5AJ9A 1ALJA 4KJGA 3ED4A 5LQQA 1AJDA 1ELZA 1K7HA 5IJSA 3IGZB 1HJKA 3Q3QA 3UN2A 3LXQA 4LQYA 1P49A 4KAVA 4FDIA 2RH6A 4MY4A 1ANIA 4UPIA 1KHLA 1SHQA 1KH5A 3T01A 3WBHA 2GSOA 4CXUA 2ZKTA 4LR9A 5LRNA 4MHXA 3NKRA 3T02A 1ALHA 1ZEDA 3KD8A 1SHNA 1ZEBA 3M8YA 2XRGA 1EQJA 5DLTA 5K4PA 1Y7AA 2GSNA 1AJCA 3NKPA 3UN3A 2GSUA 4GTZA 1EJJA 1KHJA 1KH4A 3CMRA 3UN5A 3DPCA 3B5QA 5EGEA 4GTYA 1N2KA 3SZYA 2IUCA 1ALIA 2W5VA 4UPLA 2G9YA 1FSUA 1ZEFA 1URBA 4LRDA 1KH7A 4UORA 4UPHA 3BDGA 5LRMA 4LR2A 1B8JA 2W8DA 3OT9A 4NWJA 5GOVA 3A52A 4ZG9A 3IGYB 1ELXA 2W5WA 2W5XA 1Y6VA 2W5QA 1EW8A 1EW9A 4GTXA 4TN0A 5EGHA 4UOOA 5DLVA 1ELYA 4NWXA 1E33P 3IDDA 4LREA 2W5SA 3MK0A 4LRFA 3MK2A 2VQRA 1ALKA 4LRBA 2QZUA 3MK1A 1E1ZP 5GRRA 2W5RA 5TJ3A 4KAYA 5C66A 1AUKA 2XR9A 1N2LA 1URAA 2D1GA 4FDJA 2W5TA 4KM4A 2X98A 2GA3A 4B56A 4QAXA 2IFYA 3BDFA 1O98A 4CXSA 1EI6A 3E2DA 4UPKA 3WAXA 4CYRA 3NKQA 5L0KA 3M8WA 4ZGAA 4LR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M7V A;  4ZG7 A;  1KH9 A;  5IJQ A;  3BDH A;  4YR1 A;  5HRT A;  3M8Z A;  1ED8 A;  3NKM A;  5DLW A;  5L0B A;  3TX0 A;  1E3C P;  5L0E A;  4ZG6 A;  4CXK A;  1E2S P;  3DYC A;  3WAV A;  4LR8 A;  1ANJ A;  5KXA A;  4MIV A;  1AJB A;  2GLQ A;  1O99 A;  3NKN A;  1AJA A;  3T00 A;  3TWZ A;  1HDH A;  2ANH A;  2IUC B;  3NVL A;  3UO0 A;  1EW2 A;  4LRC A;  2W8S A;  4LRA A;  4N7T A;  3SZZ A;  3TG0 A;  1KHN A;  5LIA A;  3BDG B;  5INH A;  3WAW A;  4CYS A;  1ED9 A;  1KHK A;  4KJD A;  3UNY A;  3NKO A;  3WAY A;  1HQA A;  4UOP A;  4GTW A;  5AJ9 A;  1ALJ A;  4KJG A;  3ED4 A;  5LQQ A;  1AJD A;  1ELZ A;  1K7H A;  5IJS A;  3IGZ B;  1HJK A;  3Q3Q A;  3UN2 A;  3LXQ A;  4LQY A;  1P49 A;  4KAV A;  4FDI A;  2RH6 A;  4MY4 A;  1ANI A;  4UPI A;  1KHL A;  1SHQ A;  1KH5 A;  3T01 A;  3WBH A;  2GSO A;  4CXU A;  2ZKT A;  4LR9 A;  5LRN A;  4MHX A;  3NKR A;  3T02 A;  1ALH A;  1ZED A;  3KD8 A;  1SHN A;  1ZEB A;  3M8Y A;  2XRG A;  1EQJ A;  5DLT A;  5K4P A;  1Y7A A;  2GSN A;  1AJC A;  3NKP A;  3UN3 A;  2GSU A;  4GTZ A;  1EJJ A;  1KHJ A;  1KH4 A;  3CMR A;  3UN5 A;  3DPC A;  3B5Q A;  5EGE A;  4GTY A;  1N2K A;  3SZY A;  2IUC A;  1ALI A;  2W5V A;  4UPL A;  2G9Y A;  1FSU A;  1ZEF A;  1URB A;  4LRD A;  1KH7 A;  4UOR A;  4UPH A;  3BDG A;  5LRM A;  4LR2 A;  1B8J A;  2W8D A;  3OT9 A;  4NWJ A;  5GOV A;  3A52 A;  4ZG9 A;  3IGY B;  1ELX A;  2W5W A;  2W5X A;  1Y6V A;  2W5Q A;  1EW8 A;  1EW9 A;  4GTX A;  4TN0 A;  5EGH A;  4UOO A;  5DLV A;  1ELY A;  4NWX A;  1E33 P;  3IDD A;  4LRE A;  2W5S A;  3MK0 A;  4LRF A;  3MK2 A;  2VQR A;  1ALK A;  4LRB A;  2QZU A;  3MK1 A;  1E1Z P;  5GRR A;  2W5R A;  5TJ3 A;  4KAY A;  5C66 A;  1AUK A;  2XR9 A;  1N2L A;  1URA A;  2D1G A;  4FDJ A;  2W5T A;  4KM4 A;  2X98 A;  2GA3 A;  4B56 A;  4QAX A;  2IFY A;  3BDF A;  1O98 A;  4CXS A;  1EI6 A;  3E2D A;  4UPK A;  3WAX A;  4CYR A;  3NKQ A;  5L0K A;  3M8W A;  4ZGA A;  4LR7 A; 
#chains in the Genus database with same CATH topology
 3M7V A;  4ZG7 A;  1KH9 A;  5IJQ A;  3BDH A;  4YR1 A;  5HRT A;  3M8Z A;  1ED8 A;  3NKM A;  5DLW A;  5L0B A;  3TX0 A;  1E3C P;  5L0E A;  4ZG6 A;  4CXK A;  1E2S P;  3DYC A;  3WAV A;  4LR8 A;  1ANJ A;  5KXA A;  4MIV A;  1AJB A;  2GLQ A;  1O99 A;  3NKN A;  1AJA A;  3T00 A;  3TWZ A;  1HDH A;  2ANH A;  2IUC B;  3NVL A;  3UO0 A;  1EW2 A;  4LRC A;  2W8S A;  4LRA A;  4N7T A;  3SZZ A;  3TG0 A;  1KHN A;  5LIA A;  3BDG B;  5INH A;  3WAW A;  4CYS A;  1ED9 A;  1KHK A;  4KJD A;  3UNY A;  3NKO A;  3WAY A;  1HQA A;  4UOP A;  4GTW A;  5AJ9 A;  1ALJ A;  4KJG A;  3ED4 A;  5LQQ A;  1AJD A;  1ELZ A;  1K7H A;  5IJS A;  3IGZ B;  1HJK A;  3Q3Q A;  3UN2 A;  3LXQ A;  4LQY A;  1P49 A;  4KAV A;  4FDI A;  2RH6 A;  4MY4 A;  1ANI A;  4UPI A;  1KHL A;  1SHQ A;  1KH5 A;  3T01 A;  3WBH A;  2GSO A;  4CXU A;  2ZKT A;  4LR9 A;  5LRN A;  4MHX A;  3NKR A;  3T02 A;  1ALH A;  1ZED A;  3KD8 A;  1SHN A;  1ZEB A;  3M8Y A;  2XRG A;  1EQJ A;  5DLT A;  5K4P A;  1Y7A A;  2GSN A;  1AJC A;  3NKP A;  3UN3 A;  2GSU A;  4GTZ A;  1EJJ A;  1KHJ A;  1KH4 A;  3CMR A;  3UN5 A;  3DPC A;  3B5Q A;  5EGE A;  4GTY A;  1N2K A;  3SZY A;  2IUC A;  1ALI A;  2W5V A;  4UPL A;  2G9Y A;  1FSU A;  1ZEF A;  1URB A;  4LRD A;  1KH7 A;  4UOR A;  4UPH A;  3BDG A;  5LRM A;  4LR2 A;  1B8J A;  2W8D A;  3OT9 A;  4NWJ A;  5GOV A;  3A52 A;  4ZG9 A;  3IGY B;  1ELX A;  2W5W A;  2W5X A;  1Y6V A;  2W5Q A;  1EW8 A;  1EW9 A;  4GTX A;  4TN0 A;  5EGH A;  4UOO A;  5DLV A;  1ELY A;  4NWX A;  1E33 P;  3IDD A;  4LRE A;  2W5S A;  3MK0 A;  4LRF A;  3MK2 A;  2VQR A;  1ALK A;  4LRB A;  2QZU A;  3MK1 A;  1E1Z P;  5GRR A;  2W5R A;  5TJ3 A;  4KAY A;  5C66 A;  1AUK A;  2XR9 A;  1N2L A;  1URA A;  2D1G A;  4FDJ A;  2W5T A;  4KM4 A;  2X98 A;  2GA3 A;  4B56 A;  4QAX A;  2IFY A;  3BDF A;  1O98 A;  4CXS A;  1EI6 A;  3E2D A;  4UPK A;  3WAX A;  4CYR A;  3NKQ A;  5L0K A;  3M8W A;  4ZGA A;  4LR7 A; 
#chains in the Genus database with same CATH homology
 3M7V A;  4ZG7 A;  1KH9 A;  5IJQ A;  3BDH A;  4YR1 A;  5HRT A;  3M8Z A;  1ED8 A;  3NKM A;  5DLW A;  5L0B A;  3TX0 A;  1E3C P;  5L0E A;  4ZG6 A;  4CXK A;  1E2S P;  3DYC A;  3WAV A;  4LR8 A;  1ANJ A;  5KXA A;  4MIV A;  1AJB A;  2GLQ A;  1O99 A;  3NKN A;  1AJA A;  3T00 A;  3TWZ A;  1HDH A;  2ANH A;  2IUC B;  3NVL A;  3UO0 A;  1EW2 A;  4LRC A;  2W8S A;  4LRA A;  4N7T A;  3SZZ A;  3TG0 A;  1KHN A;  5LIA A;  3BDG B;  5INH A;  3WAW A;  4CYS A;  1ED9 A;  1KHK A;  4KJD A;  3UNY A;  3NKO A;  3WAY A;  1HQA A;  4UOP A;  4GTW A;  5AJ9 A;  1ALJ A;  4KJG A;  3ED4 A;  5LQQ A;  1AJD A;  1ELZ A;  1K7H A;  5IJS A;  3IGZ B;  1HJK A;  3Q3Q A;  3UN2 A;  3LXQ A;  4LQY A;  1P49 A;  4KAV A;  4FDI A;  2RH6 A;  4MY4 A;  1ANI A;  4UPI A;  1KHL A;  1SHQ A;  1KH5 A;  3T01 A;  3WBH A;  2GSO A;  4CXU A;  2ZKT A;  4LR9 A;  5LRN A;  4MHX A;  3NKR A;  3T02 A;  1ALH A;  1ZED A;  3KD8 A;  1SHN A;  1ZEB A;  3M8Y A;  2XRG A;  1EQJ A;  5DLT A;  5K4P A;  1Y7A A;  2GSN A;  1AJC A;  3NKP A;  3UN3 A;  2GSU A;  4GTZ A;  1EJJ A;  1KHJ A;  1KH4 A;  3CMR A;  3UN5 A;  3DPC A;  3B5Q A;  5EGE A;  4GTY A;  1N2K A;  3SZY A;  2IUC A;  1ALI A;  2W5V A;  4UPL A;  2G9Y A;  1FSU A;  1ZEF A;  1URB A;  4LRD A;  1KH7 A;  4UOR A;  4UPH A;  3BDG A;  5LRM A;  4LR2 A;  1B8J A;  2W8D A;  3OT9 A;  4NWJ A;  5GOV A;  3A52 A;  4ZG9 A;  3IGY B;  1ELX A;  2W5W A;  2W5X A;  1Y6V A;  2W5Q A;  1EW8 A;  1EW9 A;  4GTX A;  4TN0 A;  5EGH A;  4UOO A;  5DLV A;  1ELY A;  4NWX A;  1E33 P;  3IDD A;  4LRE A;  2W5S A;  3MK0 A;  4LRF A;  3MK2 A;  2VQR A;  1ALK A;  4LRB A;  2QZU A;  3MK1 A;  1E1Z P;  5GRR A;  2W5R A;  5TJ3 A;  4KAY A;  5C66 A;  1AUK A;  2XR9 A;  1N2L A;  1URA A;  2D1G A;  4FDJ A;  2W5T A;  4KM4 A;  2X98 A;  2GA3 A;  4B56 A;  4QAX A;  2IFY A;  3BDF A;  1O98 A;  4CXS A;  1EI6 A;  3E2D A;  4UPK A;  3WAX A;  4CYR A;  3NKQ A;  5L0K A;  3M8W A;  4ZGA A;  4LR7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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