4MCBA

H.influenzae trmd in complex with n-(4-{[(1h-imidazol-2-ylmethyl)amino]methyl}benzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
Knots found
sequence length
219
structure length
205
Chain Sequence
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGLLDCPHYTRPEVLEGLTVPPVLMSHHEEIRKWRLKQSLQRTWLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/transferase inhibitor
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Selective Inhibitors of Bacterial t-RNA-(N(1)G37) Methyltransferase (TrmD) That Demonstrate Novel Ordering of the Lid Domain.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 50
structure length 205
sequence length 219
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2013-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4mcbA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4mcbA01
4YQPA 3N4JA 4X3LA 4YQLA 4YQJA 4YQQA 4YPXA 3O7BA 3KTYA 2CX8A 4YQCA 1X7PA 4YQ0A 3IC6A 4YQ8A 4YVIA 4YQRA 1Z85A 3OIIA 3ONPA 3DCMX 4RG1A 3AXZA 3OINA 4JALA 3QUVA 3KNUA 3BBEA 1K3RA 4MCBA 4H3YA 4YVGA 4MCCA 4YQSA 4YPWA 1UALA 4YQ2A 3E5YA 1UAKA 2Z0YA 3NK7A 5GMBA 4YQOA 5GMCA 1V2XA 1GZ0A 1VHKA 2EGVA 4JAKA 4CNDA 4YQ6A 3GYQA 2O3AA 4YVKA 4E8BA 1NS5A 4YQBA 2QWVA 1ZJRA 4YQTA 4YQGA 4YPYA 4YVJA 1OY5A 1VH0A 4X3MA 4YPZA 5D9FA 4YQ7A 4YQ1A 1P9PA 3AI9X 2V3KA 3ILKA 4CNFA 1J85A 4XBOA 2I6DA 4PZKA 3N4KA 4YQNA 1IPAA 4KDZA 5FAIA 2HA8A 2EGWA 4FAKA 1X7OA 4KGNA 2V3JA 4L69A 1VHYA 3KW2A 4YQ3A 4CNEA 2YY8A 3BBDA 4YQKA 4YQ5A 3L8UA 4YVHA 4H3ZA 1TO0A 2QMMA 1V6ZA 4J3CA 3OIJA 3IEFA 3BBHA 1NXZA 1MXIA 3AIAA 4CNGA 4YQ4A 4YQIA 4YQDA 4IG6A 4YQAA 4MCDA 5GM8A 1UAMA 4YQ9A 1O6DA 5CO4A 3KY7A 3NK6A 1UAJA
chains in the Genus database with same CATH superfamily
4YQPA 3N4JA 4X3LA 4YQLA 1WRSR 4YQJA 4YQQA 4YPXA 3O7BA 3KTYA 2CX8A 3FRWA 4YQCA 1X7PA 2XDIA 4YQ0A 3IC6A 4YQ8A 4YVIA 4YQRA 1Z85A 3OIIA 3ONPA 3DCMX 4RG1A 3AXZA 3OINA 4JALA 3QUVA 3KNUA 3BBEA 1K3RA 4MCBA 4YVGA 4H3YA 4MCCA 4YQSA 4YPWA 3SSWN 1UALA 4YQ2A 3E5YA 1UAKA 2Z0YA 3NK7A 1CO0A 4YQOA 5GMBA 1ZT9A 1RCSA 3G1CA 5GMCA 1V2XA 1GZ0A 1VHKA 2EGVA 4JAKA 3SSXN 4CNDA 4YQ6A 3GYQA 2O3AA 4YVKA 4E8BA 1NS5A 4YQBA 2QWVA 3KORA 1ZJRA 4YQTA 4YQGA 4JWJA 4YPYA 4YVJA 1OY5A 1VH0A 4X3MA 4YPZA 5D9FA 4YQ7A 4YQ1A 1P9PA 3AI9X 2V3KA 3ILKA 4CNFA 1J85A 3WRPA 2I6DA 4XBOA 4PZKA 3N4KA 4YQNA 1IPAA 4KDZA 4FMWA 5FAIA 2HA8A 2EGWA 4FAKA 1X7OA 4KGNA 2V3JA 4L69A 1VHYA 1WRTR 3KW2A 4YQ3A 4CNEA 2YY8A 3BBDA 4YQKA 4YQ5A 3L8UA 4JWGA 4JWHA 4YVHA 4H3ZA 1TRRA 1TO0A 2QMMA 1V6ZA 1JHGA 4J3CA 1MI7R 3OIJA 3IEFA 1TROA 1NXZA 3BBHA 1MXIA 3AIAA 4JWFA 4CNGA 4YQ4A 4YQIA 4YQDA 4IG6A 4YQAA 4MCDA 5GM8A 1WRPR 1UAMA 4YQ9A 1O6DA 5CO4A 3KY7A 3NK6A 1UAJA 2OZ9R
chains in the Genus database with same CATH topology
4YQPA 3N4JA 4X3LA 4YQLA 4YQJA 4YQQA 4YPXA 3O7BA 3KTYA 2CX8A 4YQCA 1X7PA 4YQ0A 3IC6A 4YQ8A 4YVIA 4YQRA 1Z85A 3OIIA 3ONPA 3DCMX 4RG1A 3AXZA 3OINA 4JALA 3QUVA 3KNUA 3BBEA 1K3RA 4MCBA 4H3YA 4YVGA 4MCCA 4YQSA 4YPWA 1UALA 4YQ2A 3E5YA 1UAKA 2Z0YA 3NK7A 5GMBA 4YQOA 5GMCA 1V2XA 1GZ0A 1VHKA 2EGVA 4JAKA 4CNDA 4YQ6A 3GYQA 2O3AA 4YVKA 4E8BA 1NS5A 4YQBA 2QWVA 1ZJRA 4YQTA 4YQGA 4JWJA 4YPYA 4YVJA 1OY5A 1VH0A 4X3MA 4YPZA 5D9FA 4YQ7A 4YQ1A 1P9PA 3AI9X 2V3KA 3ILKA 4CNFA 1J85A 4XBOA 2I6DA 4PZKA 3N4KA 4YQNA 1IPAA 4KDZA 4FMWA 5FAIA 2HA8A 2EGWA 4FAKA 1X7OA 4KGNA 2V3JA 4L69A 1VHYA 3KW2A 4YQ3A 4CNEA 2YY8A 3BBDA 4YQKA 4YQ5A 3L8UA 4JWGA 4JWHA 4YVHA 4H3ZA 1TO0A 2QMMA 1V6ZA 4J3CA 3OIJA 3IEFA 3BBHA 1NXZA 1MXIA 3AIAA 4JWFA 4CNGA 4YQ4A 4YQIA 4YQDA 4IG6A 4YQAA 4MCDA 5GM8A 1UAMA 4YQ9A 1O6DA 5CO4A 3KY7A 3NK6A 1UAJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQP A;  3N4J A;  4X3L A;  4YQL A;  4YQJ A;  4YQQ A;  4YPX A;  3O7B A;  3KTY A;  2CX8 A;  4YQC A;  1X7P A;  4YQ0 A;  3IC6 A;  4YQ8 A;  4YVI A;  4YQR A;  1Z85 A;  3OII A;  3ONP A;  3DCM X;  4RG1 A;  3AXZ A;  3OIN A;  4JAL A;  3QUV A;  3KNU A;  3BBE A;  1K3R A;  4MCB A;  4H3Y A;  4YVG A;  4MCC A;  4YQS A;  4YPW A;  1UAL A;  4YQ2 A;  3E5Y A;  1UAK A;  2Z0Y A;  3NK7 A;  5GMB A;  4YQO A;  5GMC A;  1V2X A;  1GZ0 A;  1VHK A;  2EGV A;  4JAK A;  4CND A;  4YQ6 A;  3GYQ A;  2O3A A;  4YVK A;  4E8B A;  1NS5 A;  4YQB A;  2QWV A;  1ZJR A;  4YQT A;  4YQG A;  4YPY A;  4YVJ A;  1OY5 A;  1VH0 A;  4X3M A;  4YPZ A;  5D9F A;  4YQ7 A;  4YQ1 A;  1P9P A;  3AI9 X;  2V3K A;  3ILK A;  4CNF A;  1J85 A;  4XBO A;  2I6D A;  4PZK A;  3N4K A;  4YQN A;  1IPA A;  4KDZ A;  5FAI A;  2HA8 A;  2EGW A;  4FAK A;  1X7O A;  4KGN A;  2V3J A;  4L69 A;  1VHY A;  3KW2 A;  4YQ3 A;  4CNE A;  2YY8 A;  3BBD A;  4YQK A;  4YQ5 A;  3L8U A;  4YVH A;  4H3Z A;  1TO0 A;  2QMM A;  1V6Z A;  4J3C A;  3OIJ A;  3IEF A;  3BBH A;  1NXZ A;  1MXI A;  3AIA A;  4CNG A;  4YQ4 A;  4YQI A;  4YQD A;  4IG6 A;  4YQA A;  4MCD A;  5GM8 A;  1UAM A;  4YQ9 A;  1O6D A;  5CO4 A;  3KY7 A;  3NK6 A;  1UAJ A; 
#chains in the Genus database with same CATH topology
 4YQP A;  3N4J A;  4X3L A;  4YQL A;  1WRS R;  4YQJ A;  4YQQ A;  4YPX A;  3O7B A;  3KTY A;  2CX8 A;  3FRW A;  4YQC A;  1X7P A;  2XDI A;  4YQ0 A;  3IC6 A;  4YQ8 A;  4YVI A;  4YQR A;  1Z85 A;  3OII A;  3ONP A;  3DCM X;  4RG1 A;  3AXZ A;  3OIN A;  4JAL A;  3QUV A;  3KNU A;  3BBE A;  1K3R A;  4MCB A;  4YVG A;  4H3Y A;  4MCC A;  4YQS A;  4YPW A;  3SSW N;  1UAL A;  4YQ2 A;  3E5Y A;  1UAK A;  2Z0Y A;  3NK7 A;  1CO0 A;  4YQO A;  5GMB A;  1ZT9 A;  1RCS A;  3G1C A;  5GMC A;  1V2X A;  1GZ0 A;  1VHK A;  2EGV A;  4JAK A;  3SSX N;  4CND A;  4YQ6 A;  3GYQ A;  2O3A A;  4YVK A;  4E8B A;  1NS5 A;  4YQB A;  2QWV A;  3KOR A;  1ZJR A;  4YQT A;  4YQG A;  4JWJ A;  4YPY A;  4YVJ A;  1OY5 A;  1VH0 A;  4X3M A;  4YPZ A;  5D9F A;  4YQ7 A;  4YQ1 A;  1P9P A;  3AI9 X;  2V3K A;  3ILK A;  4CNF A;  1J85 A;  3WRP A;  2I6D A;  4XBO A;  4PZK A;  3N4K A;  4YQN A;  1IPA A;  4KDZ A;  4FMW A;  5FAI A;  2HA8 A;  2EGW A;  4FAK A;  1X7O A;  4KGN A;  2V3J A;  4L69 A;  1VHY A;  1WRT R;  3KW2 A;  4YQ3 A;  4CNE A;  2YY8 A;  3BBD A;  4YQK A;  4YQ5 A;  3L8U A;  4JWG A;  4JWH A;  4YVH A;  4H3Z A;  1TRR A;  1TO0 A;  2QMM A;  1V6Z A;  1JHG A;  4J3C A;  1MI7 R;  3OIJ A;  3IEF A;  1TRO A;  1NXZ A;  3BBH A;  1MXI A;  3AIA A;  4JWF A;  4CNG A;  4YQ4 A;  4YQI A;  4YQD A;  4IG6 A;  4YQA A;  4MCD A;  5GM8 A;  1WRP R;  1UAM A;  4YQ9 A;  1O6D A;  5CO4 A;  3KY7 A;  3NK6 A;  1UAJ A;  2OZ9 R; 
#chains in the Genus database with same CATH homology
 4YQP A;  3N4J A;  4X3L A;  4YQL A;  4YQJ A;  4YQQ A;  4YPX A;  3O7B A;  3KTY A;  2CX8 A;  4YQC A;  1X7P A;  4YQ0 A;  3IC6 A;  4YQ8 A;  4YVI A;  4YQR A;  1Z85 A;  3OII A;  3ONP A;  3DCM X;  4RG1 A;  3AXZ A;  3OIN A;  4JAL A;  3QUV A;  3KNU A;  3BBE A;  1K3R A;  4MCB A;  4H3Y A;  4YVG A;  4MCC A;  4YQS A;  4YPW A;  1UAL A;  4YQ2 A;  3E5Y A;  1UAK A;  2Z0Y A;  3NK7 A;  5GMB A;  4YQO A;  5GMC A;  1V2X A;  1GZ0 A;  1VHK A;  2EGV A;  4JAK A;  4CND A;  4YQ6 A;  3GYQ A;  2O3A A;  4YVK A;  4E8B A;  1NS5 A;  4YQB A;  2QWV A;  1ZJR A;  4YQT A;  4YQG A;  4JWJ A;  4YPY A;  4YVJ A;  1OY5 A;  1VH0 A;  4X3M A;  4YPZ A;  5D9F A;  4YQ7 A;  4YQ1 A;  1P9P A;  3AI9 X;  2V3K A;  3ILK A;  4CNF A;  1J85 A;  4XBO A;  2I6D A;  4PZK A;  3N4K A;  4YQN A;  1IPA A;  4KDZ A;  4FMW A;  5FAI A;  2HA8 A;  2EGW A;  4FAK A;  1X7O A;  4KGN A;  2V3J A;  4L69 A;  1VHY A;  3KW2 A;  4YQ3 A;  4CNE A;  2YY8 A;  3BBD A;  4YQK A;  4YQ5 A;  3L8U A;  4JWG A;  4JWH A;  4YVH A;  4H3Z A;  1TO0 A;  2QMM A;  1V6Z A;  4J3C A;  3OIJ A;  3IEF A;  3BBH A;  1NXZ A;  1MXI A;  3AIA A;  4JWF A;  4CNG A;  4YQ4 A;  4YQI A;  4YQD A;  4IG6 A;  4YQA A;  4MCD A;  5GM8 A;  1UAM A;  4YQ9 A;  1O6D A;  5CO4 A;  3KY7 A;  3NK6 A;  1UAJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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