4MIVA

Crystal structure of sulfamidase, crystal form l
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
Knots found
sequence length
484
structure length
483
Chain Sequence
PRNALLLLADDGGFESGAYNNSAIATPHLDALARRSLLFRNAFTSVSSSPSRASLLTGLPQHQNGMYGLHQDVHHFNSFDKVRSLPLLLSQAGVRTGIIGKKHVGPETVYPFDFAYTEENGSVLQVGRNITRIKLLVRKFLQTQDDRPFFLYVAFHDPHRCGHSQPQYGTFCEKFGNGESGMGRIPDWTPQAYDPLDVLVPYFVPNTPAARADLAAQYTTVGRMDQGVGLVLQELRDAGVLNDTLVIFTSDNGIPFPSGRTNLYWPGTAEPLLVSSPEHPKRWGQVSEAYVSLLDLTPTILDWFSIPYPSYAIFGSKTIHLTGRSLLPALEAEPLWATVFGSQSHHEVTMSYPMRSVQHRHFRLVHNLNFKMPFPIDQDFYVSPTFQDLLNRTTAGQPTGWYKDLRHYYYRARWELYDRSRDPHETQNLATDPRFAQLLEMLRDQLAKWQWETHDPWVCAPDGVLEEKLSPQCQPLHNELRSH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords N-sulphoglucosamine sulphohydrolase
publication title Structure of sulfamidase provides insight into the molecular pathology of mucopolysaccharidosis IIIA.
pubmed doi rcsb
source organism Homo sapiens
total genus 169
structure length 483
sequence length 484
chains with identical sequence B, C, D, E, F, G, H
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.10.1.1: N-sulfoglucosamine sulfohydrolase.
pdb deposition date 2013-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
A PF16347 DUF4976 Domain of unknown function (DUF4976)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4mivA01
5C66A 4YR1A 4UPKA 2W5VA 3IGZB 1ED8A 3E2DA 4LR2A 4CXKA 5L0KA 3NKNA 5IJQA 2GLQA 5HRTA 3A52A 3TWZA 3KD8A 4KJDA 2RH6A 5DLTA 5DLWA 3BDHA 3M7VA 3M8WA 4FDIA 2GA3A 2IFYA 3DPCA 3MK1A 4CXSA 1B8JA 1O98A 3DYCA 1SHQA 4LR9A 1URAA 5KXAA 1KHNA 3WAYA 4LRDA 5EGEA 2D1GA 4CXUA 3M8YA 2XR9A 3UN3A 1N2LA 4UPHA 3WAXA 1ALHA 1ALKA 5LIAA 3WAWA 5DLVA 4UOOA 3Q3QA 1AJDA 4KAYA 3TX0A 3IGYB 4ZG6A 2ZKTA 4NWJA 1ELYA 4LQYA 5GOVA 1E1ZP 4CYSA 2W5QA 4UPLA 2GSNA 4N7TA 1E3CP 2W8SA 1E2SP 3LXQA 1AUKA 4LR7A 1ANJA 3MK0A 3SZYA 4ZG9A 5L0EA 2X98A 3NKRA 1KH5A 4ZGAA 1HQAA 4GTZA 1Y7AA 5K4PA 3MK2A 2GSOA 3CMRA 3UO0A 5INHA 1AJBA 5TJ3A 5EGHA 1URBA 1EW8A 1KH7A 1FSUA 2VQRA 3BDGB 4TN0A 4B56A 3IDDA 5LRNA 1KHKA 3UN5A 1EQJA 3M8ZA 1ALIA 1KH9A 4LRBA 4KM4A 2G9YA 3NKMA 1ZEBA 3T00A 1AJCA 2QZUA 3UNYA 1ZEFA 1SHNA 5L0BA 2W5SA 2ANHA 1ELXA 3BDGA 1KH4A 1E33P 1O99A 4MY4A 2GSUA 2IUCB 1ELZA 3UN2A 3BDFA 1EW2A 3T01A 3NKPA 2XRGA 1KHLA 4GTYA 4UORA 4GTWA 3NKQA 2W5TA 1EW9A 3WBHA 4CYRA 2IUCA 3B5QA 1P49A 1HDHA 4KAVA 1EI6A 1K7HA 4LRFA 4UOPA 3SZZA 4MIVA 4LRAA 3WAVA 4LRCA 1ALJA 2W5RA 5GRRA 5IJSA 4MHXA 3NKOA 3ED4A 4GTXA 1KHJA 1Y6VA 4QAXA 1N2KA 4LREA 2W5WA 1ANIA 1AJAA 4KJGA 5AJ9A 5LRMA 4LR8A 4UPIA 1EJJA 2W8DA 4NWXA 4FDJA 3NVLA 3TG0A 3T02A 4ZG7A 1HJKA 1ZEDA 2W5XA 3OT9A 5LQQA 1ED9A
chains in the Genus database with same CATH superfamily
5C66A 4YR1A 4UPKA 2W5VA 3IGZB 1ED8A 3E2DA 4LR2A 4CXKA 5L0KA 3NKNA 5IJQA 2GLQA 5HRTA 3A52A 3TWZA 3KD8A 4KJDA 2RH6A 5DLTA 5DLWA 3BDHA 3M7VA 3M8WA 4FDIA 2GA3A 2IFYA 3DPCA 3MK1A 4CXSA 1B8JA 1O98A 3DYCA 1SHQA 4LR9A 1URAA 5KXAA 1KHNA 3WAYA 4LRDA 5EGEA 2D1GA 4CXUA 3M8YA 2XR9A 3UN3A 1N2LA 4UPHA 3WAXA 1ALHA 1ALKA 5LIAA 3WAWA 5DLVA 4UOOA 3Q3QA 1AJDA 4KAYA 3TX0A 3IGYB 4ZG6A 2ZKTA 4NWJA 1ELYA 4LQYA 5GOVA 1E1ZP 4CYSA 2W5QA 4UPLA 2GSNA 4N7TA 1E3CP 2W8SA 1E2SP 3LXQA 1AUKA 4LR7A 1ANJA 3MK0A 3SZYA 4ZG9A 5L0EA 2X98A 3NKRA 1KH5A 4ZGAA 1HQAA 4GTZA 1Y7AA 5K4PA 3MK2A 2GSOA 3CMRA 3UO0A 5INHA 1AJBA 5TJ3A 5EGHA 1URBA 1EW8A 1KH7A 1FSUA 2VQRA 3BDGB 4TN0A 4B56A 3IDDA 5LRNA 1KHKA 3UN5A 1EQJA 3M8ZA 1ALIA 1KH9A 4LRBA 4KM4A 2G9YA 3NKMA 1ZEBA 3T00A 1AJCA 2QZUA 3UNYA 1ZEFA 1SHNA 5L0BA 2W5SA 2ANHA 1ELXA 3BDGA 1KH4A 1E33P 1O99A 4MY4A 2GSUA 2IUCB 1ELZA 3UN2A 3BDFA 1EW2A 3T01A 3NKPA 2XRGA 1KHLA 4GTYA 4UORA 4GTWA 3NKQA 2W5TA 1EW9A 3WBHA 4CYRA 2IUCA 3B5QA 1P49A 1HDHA 4KAVA 1EI6A 1K7HA 4LRFA 4UOPA 3SZZA 4MIVA 4LRAA 3WAVA 4LRCA 1ALJA 2W5RA 5GRRA 5IJSA 4MHXA 3NKOA 3ED4A 4GTXA 1KHJA 1Y6VA 4QAXA 1N2KA 4LREA 2W5WA 1ANIA 1AJAA 4KJGA 5AJ9A 5LRMA 4LR8A 4UPIA 1EJJA 2W8DA 4NWXA 4FDJA 3NVLA 3TG0A 3T02A 4ZG7A 1HJKA 1ZEDA 2W5XA 3OT9A 5LQQA 1ED9A
chains in the Genus database with same CATH topology
5C66A 4YR1A 4UPKA 2W5VA 3IGZB 1ED8A 3E2DA 4LR2A 4CXKA 5L0KA 3NKNA 5IJQA 2GLQA 5HRTA 3A52A 3TWZA 3KD8A 4KJDA 2RH6A 5DLTA 5DLWA 3BDHA 3M7VA 3M8WA 4FDIA 2GA3A 2IFYA 3DPCA 3MK1A 4CXSA 1B8JA 1O98A 3DYCA 1SHQA 4LR9A 1URAA 5KXAA 1KHNA 3WAYA 4LRDA 5EGEA 2D1GA 4CXUA 3M8YA 2XR9A 3UN3A 1N2LA 4UPHA 3WAXA 1ALHA 1ALKA 5LIAA 3WAWA 5DLVA 4UOOA 3Q3QA 1AJDA 4KAYA 3TX0A 3IGYB 4ZG6A 2ZKTA 4NWJA 1ELYA 4LQYA 5GOVA 1E1ZP 4CYSA 2W5QA 4UPLA 2GSNA 4N7TA 1E3CP 2W8SA 1E2SP 3LXQA 1AUKA 4LR7A 1ANJA 3MK0A 3SZYA 4ZG9A 5L0EA 2X98A 3NKRA 1KH5A 4ZGAA 1HQAA 4GTZA 1Y7AA 5K4PA 3MK2A 2GSOA 3CMRA 3UO0A 5INHA 1AJBA 5TJ3A 5EGHA 1URBA 1EW8A 1KH7A 1FSUA 2VQRA 3BDGB 4TN0A 4B56A 3IDDA 5LRNA 1KHKA 3UN5A 1EQJA 3M8ZA 1ALIA 1KH9A 4LRBA 4KM4A 2G9YA 3NKMA 1ZEBA 3T00A 1AJCA 2QZUA 3UNYA 1ZEFA 1SHNA 5L0BA 2W5SA 2ANHA 1ELXA 3BDGA 1KH4A 1E33P 1O99A 4MY4A 2GSUA 2IUCB 1ELZA 3UN2A 3BDFA 1EW2A 3T01A 3NKPA 2XRGA 1KHLA 4GTYA 4UORA 4GTWA 3NKQA 2W5TA 1EW9A 3WBHA 4CYRA 2IUCA 3B5QA 1P49A 1HDHA 4KAVA 1EI6A 1K7HA 4LRFA 4UOPA 3SZZA 4MIVA 4LRAA 3WAVA 4LRCA 1ALJA 2W5RA 5GRRA 5IJSA 4MHXA 3NKOA 3ED4A 4GTXA 1KHJA 1Y6VA 4QAXA 1N2KA 4LREA 2W5WA 1ANIA 1AJAA 4KJGA 5AJ9A 5LRMA 4LR8A 4UPIA 1EJJA 2W8DA 4NWXA 4FDJA 3NVLA 3TG0A 3T02A 4ZG7A 1HJKA 1ZEDA 2W5XA 3OT9A 5LQQA 1ED9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C66 A;  4YR1 A;  4UPK A;  2W5V A;  3IGZ B;  1ED8 A;  3E2D A;  4LR2 A;  4CXK A;  5L0K A;  3NKN A;  5IJQ A;  2GLQ A;  5HRT A;  3A52 A;  3TWZ A;  3KD8 A;  4KJD A;  2RH6 A;  5DLT A;  5DLW A;  3BDH A;  3M7V A;  3M8W A;  4FDI A;  2GA3 A;  2IFY A;  3DPC A;  3MK1 A;  4CXS A;  1B8J A;  1O98 A;  3DYC A;  1SHQ A;  4LR9 A;  1URA A;  5KXA A;  1KHN A;  3WAY A;  4LRD A;  5EGE A;  2D1G A;  4CXU A;  3M8Y A;  2XR9 A;  3UN3 A;  1N2L A;  4UPH A;  3WAX A;  1ALH A;  1ALK A;  5LIA A;  3WAW A;  5DLV A;  4UOO A;  3Q3Q A;  1AJD A;  4KAY A;  3TX0 A;  3IGY B;  4ZG6 A;  2ZKT A;  4NWJ A;  1ELY A;  4LQY A;  5GOV A;  1E1Z P;  4CYS A;  2W5Q A;  4UPL A;  2GSN A;  4N7T A;  1E3C P;  2W8S A;  1E2S P;  3LXQ A;  1AUK A;  4LR7 A;  1ANJ A;  3MK0 A;  3SZY A;  4ZG9 A;  5L0E A;  2X98 A;  3NKR A;  1KH5 A;  4ZGA A;  1HQA A;  4GTZ A;  1Y7A A;  5K4P A;  3MK2 A;  2GSO A;  3CMR A;  3UO0 A;  5INH A;  1AJB A;  5TJ3 A;  5EGH A;  1URB A;  1EW8 A;  1KH7 A;  1FSU A;  2VQR A;  3BDG B;  4TN0 A;  4B56 A;  3IDD A;  5LRN A;  1KHK A;  3UN5 A;  1EQJ A;  3M8Z A;  1ALI A;  1KH9 A;  4LRB A;  4KM4 A;  2G9Y A;  3NKM A;  1ZEB A;  3T00 A;  1AJC A;  2QZU A;  3UNY A;  1ZEF A;  1SHN A;  5L0B A;  2W5S A;  2ANH A;  1ELX A;  3BDG A;  1KH4 A;  1E33 P;  1O99 A;  4MY4 A;  2GSU A;  2IUC B;  1ELZ A;  3UN2 A;  3BDF A;  1EW2 A;  3T01 A;  3NKP A;  2XRG A;  1KHL A;  4GTY A;  4UOR A;  4GTW A;  3NKQ A;  2W5T A;  1EW9 A;  3WBH A;  4CYR A;  2IUC A;  3B5Q A;  1P49 A;  1HDH A;  4KAV A;  1EI6 A;  1K7H A;  4LRF A;  4UOP A;  3SZZ A;  4MIV A;  4LRA A;  3WAV A;  4LRC A;  1ALJ A;  2W5R A;  5GRR A;  5IJS A;  4MHX A;  3NKO A;  3ED4 A;  4GTX A;  1KHJ A;  1Y6V A;  4QAX A;  1N2K A;  4LRE A;  2W5W A;  1ANI A;  1AJA A;  4KJG A;  5AJ9 A;  5LRM A;  4LR8 A;  4UPI A;  1EJJ A;  2W8D A;  4NWX A;  4FDJ A;  3NVL A;  3TG0 A;  3T02 A;  4ZG7 A;  1HJK A;  1ZED A;  2W5X A;  3OT9 A;  5LQQ A;  1ED9 A; 
#chains in the Genus database with same CATH topology
 5C66 A;  4YR1 A;  4UPK A;  2W5V A;  3IGZ B;  1ED8 A;  3E2D A;  4LR2 A;  4CXK A;  5L0K A;  3NKN A;  5IJQ A;  2GLQ A;  5HRT A;  3A52 A;  3TWZ A;  3KD8 A;  4KJD A;  2RH6 A;  5DLT A;  5DLW A;  3BDH A;  3M7V A;  3M8W A;  4FDI A;  2GA3 A;  2IFY A;  3DPC A;  3MK1 A;  4CXS A;  1B8J A;  1O98 A;  3DYC A;  1SHQ A;  4LR9 A;  1URA A;  5KXA A;  1KHN A;  3WAY A;  4LRD A;  5EGE A;  2D1G A;  4CXU A;  3M8Y A;  2XR9 A;  3UN3 A;  1N2L A;  4UPH A;  3WAX A;  1ALH A;  1ALK A;  5LIA A;  3WAW A;  5DLV A;  4UOO A;  3Q3Q A;  1AJD A;  4KAY A;  3TX0 A;  3IGY B;  4ZG6 A;  2ZKT A;  4NWJ A;  1ELY A;  4LQY A;  5GOV A;  1E1Z P;  4CYS A;  2W5Q A;  4UPL A;  2GSN A;  4N7T A;  1E3C P;  2W8S A;  1E2S P;  3LXQ A;  1AUK A;  4LR7 A;  1ANJ A;  3MK0 A;  3SZY A;  4ZG9 A;  5L0E A;  2X98 A;  3NKR A;  1KH5 A;  4ZGA A;  1HQA A;  4GTZ A;  1Y7A A;  5K4P A;  3MK2 A;  2GSO A;  3CMR A;  3UO0 A;  5INH A;  1AJB A;  5TJ3 A;  5EGH A;  1URB A;  1EW8 A;  1KH7 A;  1FSU A;  2VQR A;  3BDG B;  4TN0 A;  4B56 A;  3IDD A;  5LRN A;  1KHK A;  3UN5 A;  1EQJ A;  3M8Z A;  1ALI A;  1KH9 A;  4LRB A;  4KM4 A;  2G9Y A;  3NKM A;  1ZEB A;  3T00 A;  1AJC A;  2QZU A;  3UNY A;  1ZEF A;  1SHN A;  5L0B A;  2W5S A;  2ANH A;  1ELX A;  3BDG A;  1KH4 A;  1E33 P;  1O99 A;  4MY4 A;  2GSU A;  2IUC B;  1ELZ A;  3UN2 A;  3BDF A;  1EW2 A;  3T01 A;  3NKP A;  2XRG A;  1KHL A;  4GTY A;  4UOR A;  4GTW A;  3NKQ A;  2W5T A;  1EW9 A;  3WBH A;  4CYR A;  2IUC A;  3B5Q A;  1P49 A;  1HDH A;  4KAV A;  1EI6 A;  1K7H A;  4LRF A;  4UOP A;  3SZZ A;  4MIV A;  4LRA A;  3WAV A;  4LRC A;  1ALJ A;  2W5R A;  5GRR A;  5IJS A;  4MHX A;  3NKO A;  3ED4 A;  4GTX A;  1KHJ A;  1Y6V A;  4QAX A;  1N2K A;  4LRE A;  2W5W A;  1ANI A;  1AJA A;  4KJG A;  5AJ9 A;  5LRM A;  4LR8 A;  4UPI A;  1EJJ A;  2W8D A;  4NWX A;  4FDJ A;  3NVL A;  3TG0 A;  3T02 A;  4ZG7 A;  1HJK A;  1ZED A;  2W5X A;  3OT9 A;  5LQQ A;  1ED9 A; 
#chains in the Genus database with same CATH homology
 5C66 A;  4YR1 A;  4UPK A;  2W5V A;  3IGZ B;  1ED8 A;  3E2D A;  4LR2 A;  4CXK A;  5L0K A;  3NKN A;  5IJQ A;  2GLQ A;  5HRT A;  3A52 A;  3TWZ A;  3KD8 A;  4KJD A;  2RH6 A;  5DLT A;  5DLW A;  3BDH A;  3M7V A;  3M8W A;  4FDI A;  2GA3 A;  2IFY A;  3DPC A;  3MK1 A;  4CXS A;  1B8J A;  1O98 A;  3DYC A;  1SHQ A;  4LR9 A;  1URA A;  5KXA A;  1KHN A;  3WAY A;  4LRD A;  5EGE A;  2D1G A;  4CXU A;  3M8Y A;  2XR9 A;  3UN3 A;  1N2L A;  4UPH A;  3WAX A;  1ALH A;  1ALK A;  5LIA A;  3WAW A;  5DLV A;  4UOO A;  3Q3Q A;  1AJD A;  4KAY A;  3TX0 A;  3IGY B;  4ZG6 A;  2ZKT A;  4NWJ A;  1ELY A;  4LQY A;  5GOV A;  1E1Z P;  4CYS A;  2W5Q A;  4UPL A;  2GSN A;  4N7T A;  1E3C P;  2W8S A;  1E2S P;  3LXQ A;  1AUK A;  4LR7 A;  1ANJ A;  3MK0 A;  3SZY A;  4ZG9 A;  5L0E A;  2X98 A;  3NKR A;  1KH5 A;  4ZGA A;  1HQA A;  4GTZ A;  1Y7A A;  5K4P A;  3MK2 A;  2GSO A;  3CMR A;  3UO0 A;  5INH A;  1AJB A;  5TJ3 A;  5EGH A;  1URB A;  1EW8 A;  1KH7 A;  1FSU A;  2VQR A;  3BDG B;  4TN0 A;  4B56 A;  3IDD A;  5LRN A;  1KHK A;  3UN5 A;  1EQJ A;  3M8Z A;  1ALI A;  1KH9 A;  4LRB A;  4KM4 A;  2G9Y A;  3NKM A;  1ZEB A;  3T00 A;  1AJC A;  2QZU A;  3UNY A;  1ZEF A;  1SHN A;  5L0B A;  2W5S A;  2ANH A;  1ELX A;  3BDG A;  1KH4 A;  1E33 P;  1O99 A;  4MY4 A;  2GSU A;  2IUC B;  1ELZ A;  3UN2 A;  3BDF A;  1EW2 A;  3T01 A;  3NKP A;  2XRG A;  1KHL A;  4GTY A;  4UOR A;  4GTW A;  3NKQ A;  2W5T A;  1EW9 A;  3WBH A;  4CYR A;  2IUC A;  3B5Q A;  1P49 A;  1HDH A;  4KAV A;  1EI6 A;  1K7H A;  4LRF A;  4UOP A;  3SZZ A;  4MIV A;  4LRA A;  3WAV A;  4LRC A;  1ALJ A;  2W5R A;  5GRR A;  5IJS A;  4MHX A;  3NKO A;  3ED4 A;  4GTX A;  1KHJ A;  1Y6V A;  4QAX A;  1N2K A;  4LRE A;  2W5W A;  1ANI A;  1AJA A;  4KJG A;  5AJ9 A;  5LRM A;  4LR8 A;  4UPI A;  1EJJ A;  2W8D A;  4NWX A;  4FDJ A;  3NVL A;  3TG0 A;  3T02 A;  4ZG7 A;  1HJK A;  1ZED A;  2W5X A;  3OT9 A;  5LQQ A;  1ED9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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