4MU0A

The structure of wt a. thaliana igpd2 in complex with mn2+ and 1,2,4-triazole at 1.3 a resolution
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
185
structure length
185
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 58
structure length 185
sequence length 185
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu0A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu0A02
4QNKA 5EL9A 4GQUA 4MU0A 4MU1A 5DNLA 5DNXA 5EKWA 4QNJA 5ELWA 4MU4A 4LOMA 1RHYA 4LPFA 4MU3A 2F1DA 2AE8A
chains in the Genus database with same CATH superfamily
5BR8E 5EKWA 5JEAD 3GCMA 4KHPE 4JI2I 2Q2EB 4OO1E 1N0UA 5JEAB 5C0XB 4FW9A 1N32E 1USVA 4K0KI 4AIMA 2UXDI 2UUBE 2C38B 4U3BA 1ZM9A 4LFCE 3GONA 1Z0GA 4UT4A 2HKEA 3CWVA 2O1VA 1Z0CA 4LF9I 1Z5BA 1PVGA 1N36E 3P76A 4KQVA 3QT8A 2HHHE 2ZM6E 5GMEA 4FW6A 2A2DA 4AQYI 4B3RI 1I94I 1RHYA 3WU3A 4LF5I 1FJGI 4DPYA 5LMUE 4GKJI 1E3HA 2LJPA 4LCHA 2ZBKB 5C0XC 5K36A 3ZKDA 1HNWE 4IFDA 1UDQA 4JI8E 1FWLA 1VI7A 1P42A 2XEXA 4X62I 3HKMA 2PO0B 4DV0E 4GKKE 2F4VE 4HYMA 4OO1D 4DR3E 4LF6I 4ISAA 2C37A 1XMQE 2O1UA 2V2QA 3M6AA 2OI2A 2PO1B 3P06A 3GMEA 1Z0WA 2HKJA 4DR7E 1ZM3A 1N34E 3ZZUA 3J7AM 4JG4A 2VQFE 4OX9E 2Z5EA 1MG7A 2JT2A 4LFCI 1HR0E 2J7KA 4DV7E 4DV1I 1OYPA 4WUCA 2UUCI 4B3SE 2Z5CA 4MU1A 2BA1D 1A6FA 1Z0EA 3Q6NA 1VISA 4JI1E 3J81C 5JEAE 1J5EE 5C0XE 2GQ0A 2IOQA 5IWAI 1MX0A 3L7ZB 2BR2B 2O1WA 1UDOA 2JE6A 4IZJA 2IESA 2BM1A 4DR2I 1N33I 4JI5E 4X66E 5K36F 1Z59A 5DRRA 4P52A 4DV0I 2R3VA 4MDTA 2WP8B 5IT9C 2PO2A 4X65I 4DV2I 4LF8E 4GQUA 1K47A 4FW5A 3U1KA 2BA1G 2WNRA 4URLA 2UXBE 1XMQI 1IBKE 1UDNA 4LCGA 1H72C 3T1HI 3Q1QA 3WU4A 1N0VC 2E5LI 2UUAI 3PS3A 4DR7I 2WW4A 3M7ND 2ZITA 1FKAE 5FLXQ 4B3ME 4LF7E 1S16A 4ZVIA 4BA2A 2PNZA 1EI1A 3F0NA 5C0XD 1H7SA 5A2QQ 4DR6I 4QNJA 4JI4I 4LFBE 4OKGA 4MU4A 1OJ4A 2NN6A 4JV5I 3T1YE 3LNUA 5DRQA 5FWKA 1J5EI 3PS2A 4QNKA 1QZRA 4IZKB 1ZM2A 1OYSA 4B3TI 2PNMA 1XMOE 4JI3E 3UHMA 3ZM7A 4XTJA 4JI7I 3M85D 3KRNA 4DUZE 4FWDA 2UXCE 3M7NG 4JYAE 1UEKA 4RPFA 5DNXA 1IBLE 4MQYA 3K17A 1PKPA 3J80Q 1YH8A 4AM3A 2A2CA 4X64E 4LF4E 5K36C 3PS1A 1HNXE 4DV4E 4NXME 1KVKA 4IFDC 2Z5BB 1IBKI 3JAMC 3PYEA 2GS8A 5LMNI 4HACA 3D4JA 4JI0E 2VQEI 2DEIA 3OTOE 2BA0G 4JI6I 4DR4E 2Z5CB 4J3DA 4DUYE 4YHHE 1XNQE 1HNZI 3M85G 5BR8I 4KHPI 4DPTA 1Y60A 4HXZA 1DARA 4DV3E 1N32I 4DV5E 2UUBI 3QT5A 1USUA 5EL9A 4USMA 2PNLA 4PRXA 2HK2A 4DPXA 2DEJA 4FW3A 4YY3E 2JE6B 1N36I 4IZJB 4HY1A 1Z5AA 4LFAE 2HHHI 2ZM6I 2NN6F 1KKHA 2HFSA 4AIDA 2PO0A 4NBQA 1Z0TA 5LMUI 3K1JA 1R6LA 2PO2B 3V2UC 2UXCI 4M1KA 4JYAI 4NXNE 4OO1A 2UU9E 4JI2E 2WNRB 1HNWI 3P3GA 1Y5YA 2X36A 2BM0A 3H1CA 1OYRA 4JI8I 2JEAA 1HK7A 4K0KE 2UXDE 2V2VA 2GO3A 4IFDF 4GKKI 2V8PA 2F4VI 4LF9E 1FI4A 2HK3A 2PNZB 4WUBA 3WU5A 4DR3I 2AJ4A 2GO4A 4AQYE 4B3RE 2CGEA 1I94E 1RREA 4LF5E 1FJGE 3PRYA 1PIEA 4DR5E 4GKJE 1R6MA 1N34I 2C39A 2NN6B 4PU9A 4P7AA 3B78A 2VQFI 1FNMA 4OX9I 1IBME 4DV6E 1Z0VA 1HR0I 3QT6A 3ZKBA 4R1FA 3QT7A 3L7ZA 1BKNA 4MU0A 4PRVA 4X62E 4DV7I 4B3SI 2VESA 2CVEA 5K36D 2O3ZA 1U2RA 4IFDD 1D6TA 4DPUA 5K36B 4JI1I 4LF6E 3H4LA 4IFDB 1NHJA 2WP8A 2BA0D 2JEBA 2NN6C 3J81Q 3V5RA 1NHIA 2UU9I 3PYFA 1Y4UA 5DROA 4WUDA 1XNRE 1S4EA 2AE8A 1EA6A 3LPSA 1NZ0A 4OO1F 4JI5I 4BA1A 4DXLA 4X66I 1Z5CA 4HACB 3U1YA 3ZZTA 3P3EA 3B82A 4LPFA 2C37B 1RR9A 1XXEA 4DV1E 2E1RA 2UUCE 1H74A 4LF8I 3P3CA 4DPWA 4FWHA 5IT9Q 2UXBI 1Z0BA 5JEAA 5C0XA 3CDJA 2O1TA 4DR5I 3NZKA 2C38A 3PYGA 4DR1E 3PYDA 2CG9A 5JEAC 5IWAE 2HFUA 4B3MI 4LF7I 3Q6MA 2VF3A 3GLLA 3K85A 1IBMI 4IZKA 4LCFA 4DV6I 2V34A 4UTGA 4DR2E 1N33E 1B63A 4DU7A 4IS9A 5DNLA 4LFBI 4FW4A 1XHKA 1YHCA 4X65E 4EMDA 4DV2E 4DU8A 1WUUA 1Y6ZA 4OO1B 3LTOA 3T1YI 4IZJD 2NN6E 2IERA 2X7IA 4U3DA 5GMDA 3T1HE 4N3OA 4JI3I 1XMOI 2JEAB 5FLXC 2E5LE 1E3PA 2V2ZA 2UUAE 5ELWA 4Z7CA 4USKA 2Z5BA 4DUZI 1XNRI 3J7AG 5A2QC 1IBLI 4OZEA 2NPFA 4FW7A 4DR6E 5K36E 1UDSA 2PO1A 4JI4E 4IFDE 1ZXNA 1H7UA 4OO1C 3HULA 4X64I 4LF4I 2J65A 1HNXI 4DV4I 4NXMI 4FWGA 2C39B 1KTVA 4JV5E 3DD6A 1MU5A 4BA2B 4JI0I 3WU6A 3JAMQ 4DR1I 4MYTA 5L3JA 4B3TE 3OTOI 2BV3A 5JEAF 5C0XF 2EFGA 1ZXMA 4DR4I 4JI7E 1ELOA 2CZ9A 1FWKA 4DUYI 4YHHI 1XNQI 3HJCA 2NN6D 5DRPA 4FN5A 3B4TA 4MYUA 3J80C 4DV3I 4Z7YA 1Y4SA 4DV5I 2JEBB 3ZZ0A 1KIJA 2BR2A 1ZM4A 4YY3I 1H73A 3CDIA 4I3HA 4LFAI 2IOPA 3B8HA 4BA1B 2R42A 5LMNE 4LOMA 2VQEE 1B62A 2F1DA 4JI6E 4ED4A 5LL6R 1NHHA 4MU3A 4NXNI 1HNZE
chains in the Genus database with same CATH topology
4QNKA 5EL9A 4GQUA 4MU0A 4MU1A 5DNLA 5DNXA 5EKWA 4QNJA 5ELWA 4MU4A 4LOMA 1RHYA 4LPFA 4MU3A 2F1DA 2AE8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QNK A;  5EL9 A;  4GQU A;  4MU0 A;  4MU1 A;  5DNL A;  5DNX A;  5EKW A;  4QNJ A;  5ELW A;  4MU4 A;  4LOM A;  1RHY A;  4LPF A;  4MU3 A;  2F1D A;  2AE8 A; 
#chains in the Genus database with same CATH topology
 5BR8 E;  5EKW A;  5JEA D;  3GCM A;  4KHP E;  4JI2 I;  2Q2E B;  4OO1 E;  1N0U A;  5JEA B;  5C0X B;  4FW9 A;  1N32 E;  1USV A;  4K0K I;  4AIM A;  2UXD I;  2UUB E;  2C38 B;  4U3B A;  1ZM9 A;  4LFC E;  3GON A;  1Z0G A;  4UT4 A;  2HKE A;  3CWV A;  2O1V A;  1Z0C A;  4LF9 I;  1Z5B A;  1PVG A;  1N36 E;  3P76 A;  4KQV A;  3QT8 A;  2HHH E;  2ZM6 E;  5GME A;  4FW6 A;  2A2D A;  4AQY I;  4B3R I;  1I94 I;  1RHY A;  3WU3 A;  4LF5 I;  1FJG I;  4DPY A;  5LMU E;  4GKJ I;  1E3H A;  2LJP A;  4LCH A;  2ZBK B;  5C0X C;  5K36 A;  3ZKD A;  1HNW E;  4IFD A;  1UDQ A;  4JI8 E;  1FWL A;  1VI7 A;  1P42 A;  2XEX A;  4X62 I;  3HKM A;  2PO0 B;  4DV0 E;  4GKK E;  2F4V E;  4HYM A;  4OO1 D;  4DR3 E;  4LF6 I;  4ISA A;  2C37 A;  1XMQ E;  2O1U A;  2V2Q A;  3M6A A;  2OI2 A;  2PO1 B;  3P06 A;  3GME A;  1Z0W A;  2HKJ A;  4DR7 E;  1ZM3 A;  1N34 E;  3ZZU A;  3J7A M;  4JG4 A;  2VQF E;  4OX9 E;  2Z5E A;  1MG7 A;  2JT2 A;  4LFC I;  1HR0 E;  2J7K A;  4DV7 E;  4DV1 I;  1OYP A;  4WUC A;  2UUC I;  4B3S E;  2Z5C A;  4MU1 A;  2BA1 D;  1A6F A;  1Z0E A;  3Q6N A;  1VIS A;  4JI1 E;  3J81 C;  5JEA E;  1J5E E;  5C0X E;  2GQ0 A;  2IOQ A;  5IWA I;  1MX0 A;  3L7Z B;  2BR2 B;  2O1W A;  1UDO A;  2JE6 A;  4IZJ A;  2IES A;  2BM1 A;  4DR2 I;  1N33 I;  4JI5 E;  4X66 E;  5K36 F;  1Z59 A;  5DRR A;  4P52 A;  4DV0 I;  2R3V A;  4MDT A;  2WP8 B;  5IT9 C;  2PO2 A;  4X65 I;  4DV2 I;  4LF8 E;  4GQU A;  1K47 A;  4FW5 A;  3U1K A;  2BA1 G;  2WNR A;  4URL A;  2UXB E;  1XMQ I;  1IBK E;  1UDN A;  4LCG A;  1H72 C;  3T1H I;  3Q1Q A;  3WU4 A;  1N0V C;  2E5L I;  2UUA I;  3PS3 A;  4DR7 I;  2WW4 A;  3M7N D;  2ZIT A;  1FKA E;  5FLX Q;  4B3M E;  4LF7 E;  1S16 A;  4ZVI A;  4BA2 A;  2PNZ A;  1EI1 A;  3F0N A;  5C0X D;  1H7S A;  5A2Q Q;  4DR6 I;  4QNJ A;  4JI4 I;  4LFB E;  4OKG A;  4MU4 A;  1OJ4 A;  2NN6 A;  4JV5 I;  3T1Y E;  3LNU A;  5DRQ A;  5FWK A;  1J5E I;  3PS2 A;  4QNK A;  1QZR A;  4IZK B;  1ZM2 A;  1OYS A;  4B3T I;  2PNM A;  1XMO E;  4JI3 E;  3UHM A;  3ZM7 A;  4XTJ A;  4JI7 I;  3M85 D;  3KRN A;  4DUZ E;  4FWD A;  2UXC E;  3M7N G;  4JYA E;  1UEK A;  4RPF A;  5DNX A;  1IBL E;  4MQY A;  3K17 A;  1PKP A;  3J80 Q;  1YH8 A;  4AM3 A;  2A2C A;  4X64 E;  4LF4 E;  5K36 C;  3PS1 A;  1HNX E;  4DV4 E;  4NXM E;  1KVK A;  4IFD C;  2Z5B B;  1IBK I;  3JAM C;  3PYE A;  2GS8 A;  5LMN I;  4HAC A;  3D4J A;  4JI0 E;  2VQE I;  2DEI A;  3OTO E;  2BA0 G;  4JI6 I;  4DR4 E;  2Z5C B;  4J3D A;  4DUY E;  4YHH E;  1XNQ E;  1HNZ I;  3M85 G;  5BR8 I;  4KHP I;  4DPT A;  1Y60 A;  4HXZ A;  1DAR A;  4DV3 E;  1N32 I;  4DV5 E;  2UUB I;  3QT5 A;  1USU A;  5EL9 A;  4USM A;  2PNL A;  4PRX A;  2HK2 A;  4DPX A;  2DEJ A;  4FW3 A;  4YY3 E;  2JE6 B;  1N36 I;  4IZJ B;  4HY1 A;  1Z5A A;  4LFA E;  2HHH I;  2ZM6 I;  2NN6 F;  1KKH A;  2HFS A;  4AID A;  2PO0 A;  4NBQ A;  1Z0T A;  5LMU I;  3K1J A;  1R6L A;  2PO2 B;  3V2U C;  2UXC I;  4M1K A;  4JYA I;  4NXN E;  4OO1 A;  2UU9 E;  4JI2 E;  2WNR B;  1HNW I;  3P3G A;  1Y5Y A;  2X36 A;  2BM0 A;  3H1C A;  1OYR A;  4JI8 I;  2JEA A;  1HK7 A;  4K0K E;  2UXD E;  2V2V A;  2GO3 A;  4IFD F;  4GKK I;  2V8P A;  2F4V I;  4LF9 E;  1FI4 A;  2HK3 A;  2PNZ B;  4WUB A;  3WU5 A;  4DR3 I;  2AJ4 A;  2GO4 A;  4AQY E;  4B3R E;  2CGE A;  1I94 E;  1RRE A;  4LF5 E;  1FJG E;  3PRY A;  1PIE A;  4DR5 E;  4GKJ E;  1R6M A;  1N34 I;  2C39 A;  2NN6 B;  4PU9 A;  4P7A A;  3B78 A;  2VQF I;  1FNM A;  4OX9 I;  1IBM E;  4DV6 E;  1Z0V A;  1HR0 I;  3QT6 A;  3ZKB A;  4R1F A;  3QT7 A;  3L7Z A;  1BKN A;  4MU0 A;  4PRV A;  4X62 E;  4DV7 I;  4B3S I;  2VES A;  2CVE A;  5K36 D;  2O3Z A;  1U2R A;  4IFD D;  1D6T A;  4DPU A;  5K36 B;  4JI1 I;  4LF6 E;  3H4L A;  4IFD B;  1NHJ A;  2WP8 A;  2BA0 D;  2JEB A;  2NN6 C;  3J81 Q;  3V5R A;  1NHI A;  2UU9 I;  3PYF A;  1Y4U A;  5DRO A;  4WUD A;  1XNR E;  1S4E A;  2AE8 A;  1EA6 A;  3LPS A;  1NZ0 A;  4OO1 F;  4JI5 I;  4BA1 A;  4DXL A;  4X66 I;  1Z5C A;  4HAC B;  3U1Y A;  3ZZT A;  3P3E A;  3B82 A;  4LPF A;  2C37 B;  1RR9 A;  1XXE A;  4DV1 E;  2E1R A;  2UUC E;  1H74 A;  4LF8 I;  3P3C A;  4DPW A;  4FWH A;  5IT9 Q;  2UXB I;  1Z0B A;  5JEA A;  5C0X A;  3CDJ A;  2O1T A;  4DR5 I;  3NZK A;  2C38 A;  3PYG A;  4DR1 E;  3PYD A;  2CG9 A;  5JEA C;  5IWA E;  2HFU A;  4B3M I;  4LF7 I;  3Q6M A;  2VF3 A;  3GLL A;  3K85 A;  1IBM I;  4IZK A;  4LCF A;  4DV6 I;  2V34 A;  4UTG A;  4DR2 E;  1N33 E;  1B63 A;  4DU7 A;  4IS9 A;  5DNL A;  4LFB I;  4FW4 A;  1XHK A;  1YHC A;  4X65 E;  4EMD A;  4DV2 E;  4DU8 A;  1WUU A;  1Y6Z A;  4OO1 B;  3LTO A;  3T1Y I;  4IZJ D;  2NN6 E;  2IER A;  2X7I A;  4U3D A;  5GMD A;  3T1H E;  4N3O A;  4JI3 I;  1XMO I;  2JEA B;  5FLX C;  2E5L E;  1E3P A;  2V2Z A;  2UUA E;  5ELW A;  4Z7C A;  4USK A;  2Z5B A;  4DUZ I;  1XNR I;  3J7A G;  5A2Q C;  1IBL I;  4OZE A;  2NPF A;  4FW7 A;  4DR6 E;  5K36 E;  1UDS A;  2PO1 A;  4JI4 E;  4IFD E;  1ZXN A;  1H7U A;  4OO1 C;  3HUL A;  4X64 I;  4LF4 I;  2J65 A;  1HNX I;  4DV4 I;  4NXM I;  4FWG A;  2C39 B;  1KTV A;  4JV5 E;  3DD6 A;  1MU5 A;  4BA2 B;  4JI0 I;  3WU6 A;  3JAM Q;  4DR1 I;  4MYT A;  5L3J A;  4B3T E;  3OTO I;  2BV3 A;  5JEA F;  5C0X F;  2EFG A;  1ZXM A;  4DR4 I;  4JI7 E;  1ELO A;  2CZ9 A;  1FWK A;  4DUY I;  4YHH I;  1XNQ I;  3HJC A;  2NN6 D;  5DRP A;  4FN5 A;  3B4T A;  4MYU A;  3J80 C;  4DV3 I;  4Z7Y A;  1Y4S A;  4DV5 I;  2JEB B;  3ZZ0 A;  1KIJ A;  2BR2 A;  1ZM4 A;  4YY3 I;  1H73 A;  3CDI A;  4I3H A;  4LFA I;  2IOP A;  3B8H A;  4BA1 B;  2R42 A;  5LMN E;  4LOM A;  2VQE E;  1B62 A;  2F1D A;  4JI6 E;  4ED4 A;  5LL6 R;  1NHH A;  4MU3 A;  4NXN I;  1HNZ E; 
#chains in the Genus database with same CATH homology
 4QNK A;  5EL9 A;  4GQU A;  4MU0 A;  4MU1 A;  5DNL A;  5DNX A;  5EKW A;  4QNJ A;  5ELW A;  4MU4 A;  4LOM A;  1RHY A;  4LPF A;  4MU3 A;  2F1D A;  2AE8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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