4MU1A

The structure of wt a. thaliana igpd2 in complex with mn2+, imidazole, and sulfate at 1.5 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
185
structure length
184
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLAHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 54
structure length 184
sequence length 185
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2013-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 4mu1A02
5EKWA 2F1DA 4GQUA 4MU1A 5DNXA 1RHYA 5ELWA 2AE8A 4QNJA 4LOMA 4LPFA 5EL9A 4MU3A 4MU4A 4MU0A 5DNLA 4QNKA
chains in the Genus database with same CATH superfamily
3KRNA 3L7ZB 1XNRI 5DRPA 5DRQA 2F4VE 4DV2E 4DR7I 4NXNE 2JT2A 3HULA 2PO2B 4IZKA 2ZM6E 4DPXA 3D4JA 4LF5E 3JAMQ 4GQUA 2IERA 1HNXI 1ZM2A 1XMQE 4MU3A 2BV3A 3U1YA 5K36E 5C0XC 1XNRE 2UUCI 4KHPE 2GQ0A 2HFUA 1USVA 4DUYI 2JEBA 2PNZA 2JE6B 4DV5E 3M85D 5L3JA 1N34I 4OO1B 2HKJA 5A2QC 3J80C 5C0XA 2AE8A 2Z5CA 4PRXA 2JEAA 3L7ZA 1HNXE 1BKNA 2BA0D 2HKEA 1ZM3A 4ISAA 1N0UA 1NHHA 1HR0I 2UUCE 1Z0CA 1Y4UA 4N3OA 1N36I 2HK3A 1N34E 5IT9Q 4HYMA 4OO1C 1E3PA 5EKWA 4LFCI 4K0KI 4B3RI 1VI7A 4J3DA 1PVGA 1KKHA 5LMNI 1OYRA 3CDIA 5K36F 4MQYA 2JE6A 4DV6I 4OO1A 4JI2E 1HR0E 2NN6E 2OI2A 1RHYA 3GCMA 1N36E 2HK2A 1Z0GA 5LMUI 4DR4I 1ZM4A 1Y60A 1HNZI 2BA1D 3K17A 2Z5BB 4B3RE 4K0KE 2DEIA 1MU5A 2O3ZA 4JG4A 2O1VA 5LMNE 5K36D 4LFBI 4JI0I 4OX9I 3WU4A 4B3MI 4DUZI 2VF3A 1Z5CA 5FWKA 3P3GA 1USUA 2UXCI 4U3BA 4DPTA 4IZKB 4PRVA 5LMUE 3ZZ0A 4LFAE 1UDSA 4DV4E 2C37A 1XMOE 1PKPA 3HJCA 3PYFA 4UTGA 4YY3I 3Q1QA 3V2UC 3ZM7A 4LFBE 4JV5I 4LF8I 4JI4I 4B3TI 4OX9E 2PO1B 2X7IA 4DUZE 3QT6A 3K1JA 4MYTA 4DV1I 2NN6F 2Z5BA 1IBKI 3B78A 1EA6A 1Z5BA 1J5EE 4QNJA 2WNRB 3LTOA 3ZKBA 4BA1B 2JEAB 1U2RA 4JI7E 4YY3E 1N0VC 4Z7CA 4LF8E 2Q2EB 2CG9A 1Y5YA 1Y6ZA 3M7ND 4GKJE 2NN6D 1NHIA 5K36B 5GMDA 4DV1E 1IBKE 4JYAE 1N33I 2EFGA 1Z0EA 1H7UA 4HACA 4RPFA 3HKMA 3P3CA 3J7AG 2PO1A 1NZ0A 4FW5A 4X66E 3WU3A 4DR6I 1Z0TA 1ZM9A 1Z0VA 4IFDF 4DR7E 4ED4A 4YHHI 1DARA 2WNRA 3LNUA 4DV0I 2UU9I 1UDQA 5K36C 3V5RA 4BA1A 2O1TA 1YH8A 4DR1I 3DD6A 3PS3A 4DR6E 5K36A 2BM1A 1P42A 3WU5A 4IFDD 3GONA 4DUYE 1N32I 2R3VA 1FWLA 2CGEA 3QT5A 4DV3I 2UUAI 4YHHE 4DV0E 2UU9E 2V2VA 5LL6R 3B4TA 5A2QQ 3J80Q 2UUBI 4MU4A 4MU0A 3B82A 2NN6B 1RR9A 3GLLA 4WUBA 4DR1E 2C39B 4DR5I 2V8PA 1FWKA 2C37B 4X65I 1E3HA 1Z0BA 4MU1A 5DNXA 3PYGA 5FLXC 3M85G 3P3EA 2XEXA 2PO0A 4LOMA 2O1UA 3OTOI 1D6TA 2O1WA 1FNMA 1VISA 2VESA 1R6LA 3H4LA 4FWGA 4HY1A 4OZEA 2NPFA 2VQEI 4DV3E 4WUDA 3Q6MA 2UUAE 1NHJA 4LFCE 4NXMI 2BA0G 5JEAE 2V2QA 2HHHI 2NN6C 2ZBKB 1B63A 2C38B 2HFSA 1UDOA 1Z59A 4P52A 4JI1I 4MDTA 4X65E 4DV6E 4DR5E 1KIJA 4FW6A 1I94I 4B3SI 4DR3I 2A2DA 4X62I 2NN6A 4IZJA 3J7AM 1S16A 4DR4E 4IFDB 1HNZE 3U1KA 4DR2I 4NXME 4AM3A 2C39A 3PYDA 4FW9A 3P76A 4DV7I 2PNMA 2WP8B 4JI0E 4IFDE 4HACB 5JEAA 3UHMA 4JI1E 1H74A 4USKA 4B3ME 3J81C 1Y4SA 4XTJA 2GO3A 4B3SE 4JI3I 2UXCE 2BA1G 4LF4I 4DR3E 4LF9I 1OJ4A 1FKAE 2C38A 5DRRA 4IFDC 3GMEA 4M1KA 2F1DA 5DROA 1KTVA 4DPYA 5JEAF 1YHCA 2F4VI 4DV2I 1B62A 4NXNI 4JV5E 4JI4E 4B3TE 3QT8A 4FWHA 2Z5EA 4FW3A 5ELWA 2R42A 4LPFA 4UT4A 1QZRA 4JI5I 3QT7A 4IFDA 4IZJD 4BA2A 4LF5I 2DEJA 2IESA 4AIMA 3T1YI 1R6MA 3LPSA 4LF9E 2WP8A 1XNQI 1MX0A 3Q6NA 5JEAD 4KHPI 5C0XE 4DV5I 4JI5E 4JI6I 1H7SA 4DPWA 4LCFA 4URLA 2PO0B 3T1YE 2LJPA 4JI8I 1N33E 3F0NA 2UXDI 1EI1A 2PNLA 1H73A 4GKKI 4LF7I 1XNQE 3ZKDA 1MG7A 1RREA 1S4EA 4PU9A 1K47A 4LF6I 5DNLA 4AIDA 5IT9C 3M7NG 3K85A 2V34A 1OYSA 2IOQA 2UXBI 1OYPA 2E5LI 4JI6E 1KVKA 4WUCA 4JI8E 3WU6A 2UXDE 2CVEA 4OO1E 1ZXNA 4R1FA 4IZJB 4USMA 3PS2A 2E1RA 4HXZA 4IS9A 4GKKE 2PO2A 4AQYI 4LF7E 1FI4A 4QNKA 1ZXMA 4JI2I 3CDJA 4LF6E 4FW7A 1H72C 4FWDA 5C0XF 5GMEA 1N32E 5JEAB 2ZITA 2UXBE 2E5LE 5EL9A 1Z0WA 5IWAI 2UUBE 2X36A 3CWVA 2BM0A 1HNWI 4AQYE 3PS1A 3H1CA 2J7KA 5C0XD 1IBLI 3M6AA 5FLXQ 3OTOE 4DU7A 5JEAC 1IBMI 4U3DA 4EMDA 4LFAI 4DV4I 2VQEE 4BA2B 1Z5AA 3B8HA 5IWAE 1XMOI 3T1HI 1UDNA 4FN5A 3ZZTA 4OO1F 2BR2B 2HHHE 2V2ZA 4NBQA 3P06A 4DPUA 2J65A 1HNWE 1WUUA 1FJGI 2GS8A 1UEKA 2AJ4A 2A2CA 4Z7YA 1XXEA 4DU8A 5BR8I 2IOPA 1I94E 1IBLE 1ELOA 3PRYA 4MYUA 4ZVIA 2VQFI 4X64I 1J5EI 1IBME 4X62E 3PYEA 1PIEA 4DR2E 1A6FA 4JI7I 3T1HE 4OO1D 4LCHA 4DV7E 2WW4A 2GO4A 2ZM6I 1FJGE 4GKJI 2CZ9A 4OKGA 4P7AA 3JAMC 4LCGA 3ZZUA 1XHKA 4DXLA 4JYAI 5BR8E 3J81Q 2JEBB 3NZKA 4KQVA 2PNZB 4JI3E 2VQFE 4LF4E 4I3HA 4X64E 2BR2A 1XMQI 4FW4A 1HK7A 5C0XB 4X66I 2Z5CB
chains in the Genus database with same CATH topology
5EKWA 2F1DA 4GQUA 4MU1A 5DNXA 1RHYA 5ELWA 2AE8A 4QNJA 4LOMA 4LPFA 5EL9A 4MU3A 4MU4A 4MU0A 5DNLA 4QNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EKW A;  2F1D A;  4GQU A;  4MU1 A;  5DNX A;  1RHY A;  5ELW A;  2AE8 A;  4QNJ A;  4LOM A;  4LPF A;  5EL9 A;  4MU3 A;  4MU4 A;  4MU0 A;  5DNL A;  4QNK A; 
#chains in the Genus database with same CATH topology
 3KRN A;  3L7Z B;  1XNR I;  5DRP A;  5DRQ A;  2F4V E;  4DV2 E;  4DR7 I;  4NXN E;  2JT2 A;  3HUL A;  2PO2 B;  4IZK A;  2ZM6 E;  4DPX A;  3D4J A;  4LF5 E;  3JAM Q;  4GQU A;  2IER A;  1HNX I;  1ZM2 A;  1XMQ E;  4MU3 A;  2BV3 A;  3U1Y A;  5K36 E;  5C0X C;  1XNR E;  2UUC I;  4KHP E;  2GQ0 A;  2HFU A;  1USV A;  4DUY I;  2JEB A;  2PNZ A;  2JE6 B;  4DV5 E;  3M85 D;  5L3J A;  1N34 I;  4OO1 B;  2HKJ A;  5A2Q C;  3J80 C;  5C0X A;  2AE8 A;  2Z5C A;  4PRX A;  2JEA A;  3L7Z A;  1HNX E;  1BKN A;  2BA0 D;  2HKE A;  1ZM3 A;  4ISA A;  1N0U A;  1NHH A;  1HR0 I;  2UUC E;  1Z0C A;  1Y4U A;  4N3O A;  1N36 I;  2HK3 A;  1N34 E;  5IT9 Q;  4HYM A;  4OO1 C;  1E3P A;  5EKW A;  4LFC I;  4K0K I;  4B3R I;  1VI7 A;  4J3D A;  1PVG A;  1KKH A;  5LMN I;  1OYR A;  3CDI A;  5K36 F;  4MQY A;  2JE6 A;  4DV6 I;  4OO1 A;  4JI2 E;  1HR0 E;  2NN6 E;  2OI2 A;  1RHY A;  3GCM A;  1N36 E;  2HK2 A;  1Z0G A;  5LMU I;  4DR4 I;  1ZM4 A;  1Y60 A;  1HNZ I;  2BA1 D;  3K17 A;  2Z5B B;  4B3R E;  4K0K E;  2DEI A;  1MU5 A;  2O3Z A;  4JG4 A;  2O1V A;  5LMN E;  5K36 D;  4LFB I;  4JI0 I;  4OX9 I;  3WU4 A;  4B3M I;  4DUZ I;  2VF3 A;  1Z5C A;  5FWK A;  3P3G A;  1USU A;  2UXC I;  4U3B A;  4DPT A;  4IZK B;  4PRV A;  5LMU E;  3ZZ0 A;  4LFA E;  1UDS A;  4DV4 E;  2C37 A;  1XMO E;  1PKP A;  3HJC A;  3PYF A;  4UTG A;  4YY3 I;  3Q1Q A;  3V2U C;  3ZM7 A;  4LFB E;  4JV5 I;  4LF8 I;  4JI4 I;  4B3T I;  4OX9 E;  2PO1 B;  2X7I A;  4DUZ E;  3QT6 A;  3K1J A;  4MYT A;  4DV1 I;  2NN6 F;  2Z5B A;  1IBK I;  3B78 A;  1EA6 A;  1Z5B A;  1J5E E;  4QNJ A;  2WNR B;  3LTO A;  3ZKB A;  4BA1 B;  2JEA B;  1U2R A;  4JI7 E;  4YY3 E;  1N0V C;  4Z7C A;  4LF8 E;  2Q2E B;  2CG9 A;  1Y5Y A;  1Y6Z A;  3M7N D;  4GKJ E;  2NN6 D;  1NHI A;  5K36 B;  5GMD A;  4DV1 E;  1IBK E;  4JYA E;  1N33 I;  2EFG A;  1Z0E A;  1H7U A;  4HAC A;  4RPF A;  3HKM A;  3P3C A;  3J7A G;  2PO1 A;  1NZ0 A;  4FW5 A;  4X66 E;  3WU3 A;  4DR6 I;  1Z0T A;  1ZM9 A;  1Z0V A;  4IFD F;  4DR7 E;  4ED4 A;  4YHH I;  1DAR A;  2WNR A;  3LNU A;  4DV0 I;  2UU9 I;  1UDQ A;  5K36 C;  3V5R A;  4BA1 A;  2O1T A;  1YH8 A;  4DR1 I;  3DD6 A;  3PS3 A;  4DR6 E;  5K36 A;  2BM1 A;  1P42 A;  3WU5 A;  4IFD D;  3GON A;  4DUY E;  1N32 I;  2R3V A;  1FWL A;  2CGE A;  3QT5 A;  4DV3 I;  2UUA I;  4YHH E;  4DV0 E;  2UU9 E;  2V2V A;  5LL6 R;  3B4T A;  5A2Q Q;  3J80 Q;  2UUB I;  4MU4 A;  4MU0 A;  3B82 A;  2NN6 B;  1RR9 A;  3GLL A;  4WUB A;  4DR1 E;  2C39 B;  4DR5 I;  2V8P A;  1FWK A;  2C37 B;  4X65 I;  1E3H A;  1Z0B A;  4MU1 A;  5DNX A;  3PYG A;  5FLX C;  3M85 G;  3P3E A;  2XEX A;  2PO0 A;  4LOM A;  2O1U A;  3OTO I;  1D6T A;  2O1W A;  1FNM A;  1VIS A;  2VES A;  1R6L A;  3H4L A;  4FWG A;  4HY1 A;  4OZE A;  2NPF A;  2VQE I;  4DV3 E;  4WUD A;  3Q6M A;  2UUA E;  1NHJ A;  4LFC E;  4NXM I;  2BA0 G;  5JEA E;  2V2Q A;  2HHH I;  2NN6 C;  2ZBK B;  1B63 A;  2C38 B;  2HFS A;  1UDO A;  1Z59 A;  4P52 A;  4JI1 I;  4MDT A;  4X65 E;  4DV6 E;  4DR5 E;  1KIJ A;  4FW6 A;  1I94 I;  4B3S I;  4DR3 I;  2A2D A;  4X62 I;  2NN6 A;  4IZJ A;  3J7A M;  1S16 A;  4DR4 E;  4IFD B;  1HNZ E;  3U1K A;  4DR2 I;  4NXM E;  4AM3 A;  2C39 A;  3PYD A;  4FW9 A;  3P76 A;  4DV7 I;  2PNM A;  2WP8 B;  4JI0 E;  4IFD E;  4HAC B;  5JEA A;  3UHM A;  4JI1 E;  1H74 A;  4USK A;  4B3M E;  3J81 C;  1Y4S A;  4XTJ A;  2GO3 A;  4B3S E;  4JI3 I;  2UXC E;  2BA1 G;  4LF4 I;  4DR3 E;  4LF9 I;  1OJ4 A;  1FKA E;  2C38 A;  5DRR A;  4IFD C;  3GME A;  4M1K A;  2F1D A;  5DRO A;  1KTV A;  4DPY A;  5JEA F;  1YHC A;  2F4V I;  4DV2 I;  1B62 A;  4NXN I;  4JV5 E;  4JI4 E;  4B3T E;  3QT8 A;  4FWH A;  2Z5E A;  4FW3 A;  5ELW A;  2R42 A;  4LPF A;  4UT4 A;  1QZR A;  4JI5 I;  3QT7 A;  4IFD A;  4IZJ D;  4BA2 A;  4LF5 I;  2DEJ A;  2IES A;  4AIM A;  3T1Y I;  1R6M A;  3LPS A;  4LF9 E;  2WP8 A;  1XNQ I;  1MX0 A;  3Q6N A;  5JEA D;  4KHP I;  5C0X E;  4DV5 I;  4JI5 E;  4JI6 I;  1H7S A;  4DPW A;  4LCF A;  4URL A;  2PO0 B;  3T1Y E;  2LJP A;  4JI8 I;  1N33 E;  3F0N A;  2UXD I;  1EI1 A;  2PNL A;  1H73 A;  4GKK I;  4LF7 I;  1XNQ E;  3ZKD A;  1MG7 A;  1RRE A;  1S4E A;  4PU9 A;  1K47 A;  4LF6 I;  5DNL A;  4AID A;  5IT9 C;  3M7N G;  3K85 A;  2V34 A;  1OYS A;  2IOQ A;  2UXB I;  1OYP A;  2E5L I;  4JI6 E;  1KVK A;  4WUC A;  4JI8 E;  3WU6 A;  2UXD E;  2CVE A;  4OO1 E;  1ZXN A;  4R1F A;  4IZJ B;  4USM A;  3PS2 A;  2E1R A;  4HXZ A;  4IS9 A;  4GKK E;  2PO2 A;  4AQY I;  4LF7 E;  1FI4 A;  4QNK A;  1ZXM A;  4JI2 I;  3CDJ A;  4LF6 E;  4FW7 A;  1H72 C;  4FWD A;  5C0X F;  5GME A;  1N32 E;  5JEA B;  2ZIT A;  2UXB E;  2E5L E;  5EL9 A;  1Z0W A;  5IWA I;  2UUB E;  2X36 A;  3CWV A;  2BM0 A;  1HNW I;  4AQY E;  3PS1 A;  3H1C A;  2J7K A;  5C0X D;  1IBL I;  3M6A A;  5FLX Q;  3OTO E;  4DU7 A;  5JEA C;  1IBM I;  4U3D A;  4EMD A;  4LFA I;  4DV4 I;  2VQE E;  4BA2 B;  1Z5A A;  3B8H A;  5IWA E;  1XMO I;  3T1H I;  1UDN A;  4FN5 A;  3ZZT A;  4OO1 F;  2BR2 B;  2HHH E;  2V2Z A;  4NBQ A;  3P06 A;  4DPU A;  2J65 A;  1HNW E;  1WUU A;  1FJG I;  2GS8 A;  1UEK A;  2AJ4 A;  2A2C A;  4Z7Y A;  1XXE A;  4DU8 A;  5BR8 I;  2IOP A;  1I94 E;  1IBL E;  1ELO A;  3PRY A;  4MYU A;  4ZVI A;  2VQF I;  4X64 I;  1J5E I;  1IBM E;  4X62 E;  3PYE A;  1PIE A;  4DR2 E;  1A6F A;  4JI7 I;  3T1H E;  4OO1 D;  4LCH A;  4DV7 E;  2WW4 A;  2GO4 A;  2ZM6 I;  1FJG E;  4GKJ I;  2CZ9 A;  4OKG A;  4P7A A;  3JAM C;  4LCG A;  3ZZU A;  1XHK A;  4DXL A;  4JYA I;  5BR8 E;  3J81 Q;  2JEB B;  3NZK A;  4KQV A;  2PNZ B;  4JI3 E;  2VQF E;  4LF4 E;  4I3H A;  4X64 E;  2BR2 A;  1XMQ I;  4FW4 A;  1HK7 A;  5C0X B;  4X66 I;  2Z5C B; 
#chains in the Genus database with same CATH homology
 5EKW A;  2F1D A;  4GQU A;  4MU1 A;  5DNX A;  1RHY A;  5ELW A;  2AE8 A;  4QNJ A;  4LOM A;  4LPF A;  5EL9 A;  4MU3 A;  4MU4 A;  4MU0 A;  5DNL A;  4QNK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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