4N5FA

Crystal structure of a putative acyl-coa dehydrogenase with bound fadh2 from burkholderia cenocepacia j2315
Total Genus 138
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
378
structure length
378
Chain Sequence
HMDELYTEDQRMIRDAARAFATEMLAPNAAQWDHDAHLPDAIVAQLGELGLLGMIVPQELGGSYTDYVAYALAMEEVAAGDAACATMMSVHNSVGCGPILGFGTPAQKDRWLADMAAGRVIGAFCLTEPHAGSEANNLRTRAELRDGQWVLNGAKQFVTNGQRAGVAIVFAMTDPEAGKRGISAFLVPTDTPGFIVGKPEKKMGIRASDTCPITFENCAIPEDNLLGNRGEGLKIALSNLEGGRIGIAAQALGIARAAFDKARRYAGERVQFGKPIAEHQAIQQKLADMAVQINAARLLVHHAAKLRTAGLPCLSEASQAKLFASEMAERVCSDAIQIHGGYGYLVDYEVERHYRDARITQIYEGTSEVQRMVIARQL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Putative acyl-CoA dehydrogenase
publication title Crystal Structure of a Putative acyl-CoA dehydrogenase with bound FADH2 from Burkholderia cenocepacia J2315
rcsb
source organism Burkholderia cenocepacia
total genus 138
structure length 378
sequence length 378
chains with identical sequence B
ec nomenclature ec 1.3.99.-:
pdb deposition date 2013-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4n5fA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4n5fA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4n5fA02
2FONA 2OR0A 3MPIA 3MMOA 4O5MA 1GU6A 1UDYA 3EONA 1BUCA 3OWAA 3BNJA 3SCEA 1UKWA 2WBIA 2OT4A 4IV6A 4N5FA 3MXLA 1FS8A 3UU9A 2ZAFA 4JEKA 1RX0A 4RM7A 3D9DA 2YYGA 3LGQA 2PG0A 3BNFA 2R0NA 4Q5BA 4M9AA 3D6BA 3M9VA 3P4TA 5K3JA 4Q17A 2IX5A 3TORA 3SXQA 2REHA 3GQTA 3GM6A 4L38A 2RFQA 2JBSA 3AFEA 1WS9A 4HR3A 3D9EA 3II9A 3SWOA 4IRNA 4L3YA 2YYKA 1SIQA 4G5EA 3RKHA 4XVXA 4L1FA 2EBAA 2YYJA 3L1TA 3OIBA 4L3XA 2UXWA 5K3GA 1IVHA 1SIRA 5K3HA 1OAHA 3AFFA 3UBRA 2YYMA 3NF4A 2JIFA 2Z1QA 3MKHA 1QDBA 3BNHA 3GNCA 4W9UA 3HWCA 5K3IA 4Q5CA 2RF7A 1FS9A 2IX6A 3PFDA 3MPJA 1T9GA 1R2JA 2E80A 4Q4UA 3MDDA 4NXLA 1JQIA 3MDEA 1EGEA 3B96A 3X0XA 1FS7A 3SF6A 1U8VA 4ZXVA 4KTOA 3F29A 4U83A 3OWMA 4OO2A 2DVLA 1EGDA 2RDZA 2C12A 4DOYA 2JBTA 3FCJA 2C0UA 4ZYJA 4WJYA 3EOMA 1W07A 3X0YA 2A1TA 4X28A 4KCFA 3FO3A 2R0MA 2ZO5A 2VIGA 4Q0TA 3TTBA 2VR0A 2D29A 2E81A 3R7KA 2JBRA 2YYLA 1IS2A 4X28C 3D1IA 3BNGA 2J7AA 3D9FA 4Q1OA 2CX9A 1EGCA 3D9GA 4P13A 4L3ZA 2DDHA 3S7WA 3LG1A 2YYIA
chains in the Genus database with same CATH superfamily
4J1VA 4E01A 2FONA 2OR0A 3MPIA 2CJ5A 4O5MA 3MMOA 1GU6A 1UDYA 3EONA 1BUCA 3OWAA 3BNJA 3SCEA 1UKWA 2WBIA 2OT4A 4IV6A 4AI6A 4N5FA 3MXLA 1FS8A 2R03A 4H85A 3UU9A 4AKGA 2ZAFA 4JEKA 1GKZA 5B5WA 3Q24A 5J6AA 1RX0A 4RM7A 2PNRA 3D9DA 1X90A 4V25A 1GKXA 2YYGA 3LGQA 2PG0A 3BNFA 2R02A 4MP7A 2R0NA 4Q5BA 4HKSA 3DJLA 1K8TA 4FF1A 4M9AA 3D6BA 3M9VA 3P4TA 5K3JA 3C46A 4FZ4A 4Q17A 3X29A 4E00A 2IX5A 3CRKA 3TORA 2CJ4A 4FF4A 3N0RA 4JIOA 2YGWA 2QR4A 2REHA 3SXQA 4JIZA 2Q8GA 1RJ1A 2Q8HA 1JM6A 5GJWE 3GQTA 1R3BA 3GM6A 3Q0AA 1Y0VA 2XS8A 2EBHX 2BU8A 4L38A 2GBBA 2RFQA 2JBSA 3AFEA 1WS9A 4HR3A 2BTZA 3D9EA 3II9A 4KSFA 2CJ8A 1XG2B 4FF2A 3SWOA 1RJ4A 4IRNA 2ZDXA 4MPCA 2XQRB 4L3YA 5BRKA 2OEVA 2YYKA 3TZ0A 1SIQA 4G5EA 3RKHA 4XVXA 2BU2A 3CE2A 4L1FA 2EBAA 4F0XA 2YYJA 3L1TA 2VF1A 4H81A 5M4KA 3OIBA 4L3XA 1Y8OA 2UXWA 3VADA 5K3GA 1SC5A 1S26A 4P79A 3TZ5A 1IVHA 1SIRA 5K3HA 4MPEA 1OAHA 4E02A 3AFFA 2Q8IA 3CRLA 2LFWA 3UBRA 2YYMA 2ZKJA 3NF4A 2JIFA 2Z1QA 1Y8NA 3C2PA 3MKHA 3TZ4A 1QDBA 2BU5A 3BNHA 1LVCA 4MP2A 3GNCA 2CJ6A 4W9UA 3HWCA 5K3IA 1XFYA 2E0AA 1FS9A 2IX6A 2RF7A 4Q5CA 3PFDA 2OEXA 1PK0A 2OJQA 3MPJA 4DZYA 1X91A 1T9GA 2Q8FA 1R2JA 1XFZA 2F6LA 4V26A 2BU6A 2E80A 4Q4UA 3MDDA 4NXLA 2AZEA 5B6BA 4KSAA 3Q22A 1JQIA 4AKHA 3MDEA 1EGEA 3B96A 3X0XA 1FS7A 3SF6A 1RP3A 1U8VA 2BU7A 2EC5A 2R05A 4ZXVA 2HJNA 2PO4A 4KTOA 3TZ2A 1XFUA 3F29A 4U83A 5M4PA 3C3LA 3OWMA 1Y8PA 3KMLA 4OO2A 2DVLA 1EGDA 1XFXA 2RDZA 1XFWA 2C12A 4DOYA 2JBTA 3FCJA 2C0UA 4ZYJA 1K90A 3EOMA 4WJYA 5M4NA 1K93A 1W07A 3X0YA 2ZDYA 2A1TA 2AO2A 4X28A 4KCFA 1SK6A 3FO3A 2FP2A 1X8ZA 2R0MA 2ZO5A 2VIGA 3D2RA 4Q0TA 5B5VA 3TTBA 2VR0A 4AKIA 4LQSB 3VKGA 1XFVA 2D29A 2E81A 5BRMA 3R7KA 3U33A 4G97A 5J71A 4FF3A 2XS1A 4HKRA 2JBRA 4KS9A 2YYLA 3VKHA 5GJVE 4MPNA 1IS2A 4LQQB 4X28C 4QICA 3D1IA 3BNGA 2J7AA 1PI1A 2FP1A 2CJ7A 5EZ3A 5M4MA 3D9FA 4H7QA 4Q1OA 2CX9A 1EGCA 3D9GA 4P13A 1GJVA 3Q23A 4L3ZA 2EBFX 2DDHA 3S7WA 3LG1A 2YYIA
chains in the Genus database with same CATH topology
2FONA 2OR0A 3MPIA 3MMOA 4O5MA 1GU6A 1UDYA 3EONA 1BUCA 3OWAA 3BNJA 3SCEA 1UKWA 2WBIA 2OT4A 4IV6A 4N5FA 3MXLA 1FS8A 3UU9A 2ZAFA 4JEKA 1RX0A 4RM7A 3D9DA 2YYGA 3LGQA 2PG0A 3BNFA 2R0NA 4Q5BA 4M9AA 3D6BA 3M9VA 3P4TA 5K3JA 4Q17A 2IX5A 3TORA 3SXQA 2REHA 3GQTA 3GM6A 4L38A 2RFQA 2JBSA 3AFEA 1WS9A 4HR3A 3D9EA 3II9A 3SWOA 4IRNA 4L3YA 2YYKA 1SIQA 4G5EA 3RKHA 4XVXA 4L1FA 2EBAA 2YYJA 3L1TA 3OIBA 4L3XA 2UXWA 5K3GA 1IVHA 1SIRA 5K3HA 1OAHA 3AFFA 3UBRA 2YYMA 3NF4A 2JIFA 2Z1QA 3MKHA 1QDBA 3BNHA 3GNCA 4W9UA 3HWCA 5K3IA 4Q5CA 2RF7A 1FS9A 2IX6A 3PFDA 3MPJA 1T9GA 1R2JA 2E80A 4Q4UA 3MDDA 4NXLA 1JQIA 3MDEA 1EGEA 3B96A 3X0XA 1FS7A 3SF6A 1U8VA 4ZXVA 4KTOA 3F29A 4U83A 3OWMA 4OO2A 2DVLA 1EGDA 2RDZA 2C12A 4DOYA 2JBTA 3FCJA 2C0UA 4ZYJA 4WJYA 3EOMA 1W07A 3X0YA 2A1TA 4X28A 4KCFA 3FO3A 2R0MA 2ZO5A 2VIGA 4Q0TA 3TTBA 2VR0A 2D29A 2E81A 3R7KA 2JBRA 2YYLA 1IS2A 4X28C 3D1IA 3BNGA 2J7AA 3D9FA 4Q1OA 2CX9A 1EGCA 3D9GA 4P13A 4L3ZA 2DDHA 3S7WA 3LG1A 2YYIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FON A;  2OR0 A;  3MPI A;  3MMO A;  4O5M A;  1GU6 A;  1UDY A;  3EON A;  1BUC A;  3OWA A;  3BNJ A;  3SCE A;  1UKW A;  2WBI A;  2OT4 A;  4IV6 A;  4N5F A;  3MXL A;  1FS8 A;  3UU9 A;  2ZAF A;  4JEK A;  1RX0 A;  4RM7 A;  3D9D A;  2YYG A;  3LGQ A;  2PG0 A;  3BNF A;  2R0N A;  4Q5B A;  4M9A A;  3D6B A;  3M9V A;  3P4T A;  5K3J A;  4Q17 A;  2IX5 A;  3TOR A;  3SXQ A;  2REH A;  3GQT A;  3GM6 A;  4L38 A;  2RFQ A;  2JBS A;  3AFE A;  1WS9 A;  4HR3 A;  3D9E A;  3II9 A;  3SWO A;  4IRN A;  4L3Y A;  2YYK A;  1SIQ A;  4G5E A;  3RKH A;  4XVX A;  4L1F A;  2EBA A;  2YYJ A;  3L1T A;  3OIB A;  4L3X A;  2UXW A;  5K3G A;  1IVH A;  1SIR A;  5K3H A;  1OAH A;  3AFF A;  3UBR A;  2YYM A;  3NF4 A;  2JIF A;  2Z1Q A;  3MKH A;  1QDB A;  3BNH A;  3GNC A;  4W9U A;  3HWC A;  5K3I A;  4Q5C A;  2RF7 A;  1FS9 A;  2IX6 A;  3PFD A;  3MPJ A;  1T9G A;  1R2J A;  2E80 A;  4Q4U A;  3MDD A;  4NXL A;  1JQI A;  3MDE A;  1EGE A;  3B96 A;  3X0X A;  1FS7 A;  3SF6 A;  1U8V A;  4ZXV A;  4KTO A;  3F29 A;  4U83 A;  3OWM A;  4OO2 A;  2DVL A;  1EGD A;  2RDZ A;  2C12 A;  4DOY A;  2JBT A;  3FCJ A;  2C0U A;  4ZYJ A;  4WJY A;  3EOM A;  1W07 A;  3X0Y A;  2A1T A;  4X28 A;  4KCF A;  3FO3 A;  2R0M A;  2ZO5 A;  2VIG A;  4Q0T A;  3TTB A;  2VR0 A;  2D29 A;  2E81 A;  3R7K A;  2JBR A;  2YYL A;  1IS2 A;  4X28 C;  3D1I A;  3BNG A;  2J7A A;  3D9F A;  4Q1O A;  2CX9 A;  1EGC A;  3D9G A;  4P13 A;  4L3Z A;  2DDH A;  3S7W A;  3LG1 A;  2YYI A; 
#chains in the Genus database with same CATH topology
 4J1V A;  4E01 A;  2FON A;  2OR0 A;  3MPI A;  2CJ5 A;  4O5M A;  3MMO A;  1GU6 A;  1UDY A;  3EON A;  1BUC A;  3OWA A;  3BNJ A;  3SCE A;  1UKW A;  2WBI A;  2OT4 A;  4IV6 A;  4AI6 A;  4N5F A;  3MXL A;  1FS8 A;  2R03 A;  4H85 A;  3UU9 A;  4AKG A;  2ZAF A;  4JEK A;  1GKZ A;  5B5W A;  3Q24 A;  5J6A A;  1RX0 A;  4RM7 A;  2PNR A;  3D9D A;  1X90 A;  4V25 A;  1GKX A;  2YYG A;  3LGQ A;  2PG0 A;  3BNF A;  2R02 A;  4MP7 A;  2R0N A;  4Q5B A;  4HKS A;  3DJL A;  1K8T A;  4FF1 A;  4M9A A;  3D6B A;  3M9V A;  3P4T A;  5K3J A;  3C46 A;  4FZ4 A;  4Q17 A;  3X29 A;  4E00 A;  2IX5 A;  3CRK A;  3TOR A;  2CJ4 A;  4FF4 A;  3N0R A;  4JIO A;  2YGW A;  2QR4 A;  2REH A;  3SXQ A;  4JIZ A;  2Q8G A;  1RJ1 A;  2Q8H A;  1JM6 A;  5GJW E;  3GQT A;  1R3B A;  3GM6 A;  3Q0A A;  1Y0V A;  2XS8 A;  2EBH X;  2BU8 A;  4L38 A;  2GBB A;  2RFQ A;  2JBS A;  3AFE A;  1WS9 A;  4HR3 A;  2BTZ A;  3D9E A;  3II9 A;  4KSF A;  2CJ8 A;  1XG2 B;  4FF2 A;  3SWO A;  1RJ4 A;  4IRN A;  2ZDX A;  4MPC A;  2XQR B;  4L3Y A;  5BRK A;  2OEV A;  2YYK A;  3TZ0 A;  1SIQ A;  4G5E A;  3RKH A;  4XVX A;  2BU2 A;  3CE2 A;  4L1F A;  2EBA A;  4F0X A;  2YYJ A;  3L1T A;  2VF1 A;  4H81 A;  5M4K A;  3OIB A;  4L3X A;  1Y8O A;  2UXW A;  3VAD A;  5K3G A;  1SC5 A;  1S26 A;  4P79 A;  3TZ5 A;  1IVH A;  1SIR A;  5K3H A;  4MPE A;  1OAH A;  4E02 A;  3AFF A;  2Q8I A;  3CRL A;  2LFW A;  3UBR A;  2YYM A;  2ZKJ A;  3NF4 A;  2JIF A;  2Z1Q A;  1Y8N A;  3C2P A;  3MKH A;  3TZ4 A;  1QDB A;  2BU5 A;  3BNH A;  1LVC A;  4MP2 A;  3GNC A;  2CJ6 A;  4W9U A;  3HWC A;  5K3I A;  1XFY A;  2E0A A;  1FS9 A;  2IX6 A;  2RF7 A;  4Q5C A;  3PFD A;  2OEX A;  1PK0 A;  2OJQ A;  3MPJ A;  4DZY A;  1X91 A;  1T9G A;  2Q8F A;  1R2J A;  1XFZ A;  2F6L A;  4V26 A;  2BU6 A;  2E80 A;  4Q4U A;  3MDD A;  4NXL A;  2AZE A;  5B6B A;  4KSA A;  3Q22 A;  1JQI A;  4AKH A;  3MDE A;  1EGE A;  3B96 A;  3X0X A;  1FS7 A;  3SF6 A;  1RP3 A;  1U8V A;  2BU7 A;  2EC5 A;  2R05 A;  4ZXV A;  2HJN A;  2PO4 A;  4KTO A;  3TZ2 A;  1XFU A;  3F29 A;  4U83 A;  5M4P A;  3C3L A;  3OWM A;  1Y8P A;  3KML A;  4OO2 A;  2DVL A;  1EGD A;  1XFX A;  2RDZ A;  1XFW A;  2C12 A;  4DOY A;  2JBT A;  3FCJ A;  2C0U A;  4ZYJ A;  1K90 A;  3EOM A;  4WJY A;  5M4N A;  1K93 A;  1W07 A;  3X0Y A;  2ZDY A;  2A1T A;  2AO2 A;  4X28 A;  4KCF A;  1SK6 A;  3FO3 A;  2FP2 A;  1X8Z A;  2R0M A;  2ZO5 A;  2VIG A;  3D2R A;  4Q0T A;  5B5V A;  3TTB A;  2VR0 A;  4AKI A;  4LQS B;  3VKG A;  1XFV A;  2D29 A;  2E81 A;  5BRM A;  3R7K A;  3U33 A;  4G97 A;  5J71 A;  4FF3 A;  2XS1 A;  4HKR A;  2JBR A;  4KS9 A;  2YYL A;  3VKH A;  5GJV E;  4MPN A;  1IS2 A;  4LQQ B;  4X28 C;  4QIC A;  3D1I A;  3BNG A;  2J7A A;  1PI1 A;  2FP1 A;  2CJ7 A;  5EZ3 A;  5M4M A;  3D9F A;  4H7Q A;  4Q1O A;  2CX9 A;  1EGC A;  3D9G A;  4P13 A;  1GJV A;  3Q23 A;  4L3Z A;  2EBF X;  2DDH A;  3S7W A;  3LG1 A;  2YYI A; 
#chains in the Genus database with same CATH homology
 2FON A;  2OR0 A;  3MPI A;  3MMO A;  4O5M A;  1GU6 A;  1UDY A;  3EON A;  1BUC A;  3OWA A;  3BNJ A;  3SCE A;  1UKW A;  2WBI A;  2OT4 A;  4IV6 A;  4N5F A;  3MXL A;  1FS8 A;  3UU9 A;  2ZAF A;  4JEK A;  1RX0 A;  4RM7 A;  3D9D A;  2YYG A;  3LGQ A;  2PG0 A;  3BNF A;  2R0N A;  4Q5B A;  4M9A A;  3D6B A;  3M9V A;  3P4T A;  5K3J A;  4Q17 A;  2IX5 A;  3TOR A;  3SXQ A;  2REH A;  3GQT A;  3GM6 A;  4L38 A;  2RFQ A;  2JBS A;  3AFE A;  1WS9 A;  4HR3 A;  3D9E A;  3II9 A;  3SWO A;  4IRN A;  4L3Y A;  2YYK A;  1SIQ A;  4G5E A;  3RKH A;  4XVX A;  4L1F A;  2EBA A;  2YYJ A;  3L1T A;  3OIB A;  4L3X A;  2UXW A;  5K3G A;  1IVH A;  1SIR A;  5K3H A;  1OAH A;  3AFF A;  3UBR A;  2YYM A;  3NF4 A;  2JIF A;  2Z1Q A;  3MKH A;  1QDB A;  3BNH A;  3GNC A;  4W9U A;  3HWC A;  5K3I A;  4Q5C A;  2RF7 A;  1FS9 A;  2IX6 A;  3PFD A;  3MPJ A;  1T9G A;  1R2J A;  2E80 A;  4Q4U A;  3MDD A;  4NXL A;  1JQI A;  3MDE A;  1EGE A;  3B96 A;  3X0X A;  1FS7 A;  3SF6 A;  1U8V A;  4ZXV A;  4KTO A;  3F29 A;  4U83 A;  3OWM A;  4OO2 A;  2DVL A;  1EGD A;  2RDZ A;  2C12 A;  4DOY A;  2JBT A;  3FCJ A;  2C0U A;  4ZYJ A;  4WJY A;  3EOM A;  1W07 A;  3X0Y A;  2A1T A;  4X28 A;  4KCF A;  3FO3 A;  2R0M A;  2ZO5 A;  2VIG A;  4Q0T A;  3TTB A;  2VR0 A;  2D29 A;  2E81 A;  3R7K A;  2JBR A;  2YYL A;  1IS2 A;  4X28 C;  3D1I A;  3BNG A;  2J7A A;  3D9F A;  4Q1O A;  2CX9 A;  1EGC A;  3D9G A;  4P13 A;  4L3Z A;  2DDH A;  3S7W A;  3LG1 A;  2YYI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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