4N7VA

Crystal structure of human plk4 cryptic polo box (cpb) in complex with a cep152 n-terminal fragment
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
222
structure length
222
Chain Sequence
TLRSITSPLVAHRLKPIRQKTKKAVVSILDSEEVCVELVKEYASQEYVKEVLQISSDGNTITIYYPNGGRGFPLADRPPSPTDNISRYSFDNLPEKYWRKYQYASRFVQLVRSKSPKITYFTRYAKCILMENSPGADFEVWFYDGVKIHKTEDFIQVIEKTGKSYTLKSESEVNSLKEEIKMYMDHANEGHRICLALESIISEEERKTRSAPFFPIIIGRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell cycle
molecule keywords Serine/threonine-protein kinase PLK4
publication title Molecular basis for unidirectional scaffold switching of human Plk4 in centriole biogenesis.
pubmed doi rcsb
source organism Homo sapiens
total genus 52
structure length 222
sequence length 222
chains with identical sequence B
ec nomenclature ec 2.7.11.21: Polo kinase.
pdb deposition date 2013-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18190 Plk4_PB1 Polo-like Kinase 4 Polo Box 1
A PF18409 Plk4_PB2 Polo-like Kinase 4 Polo Box 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1120.120 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain Arylsulfatase, C-terminal domain 4n7vA01
3.30.1120.130 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain Arylsulfatase, C-terminal domain 4n7vA02
4NK7A 4NKBA 4G7NA 4N7VA 4N7ZA 4N9JA
chains in the Genus database with same CATH superfamily
1E1ZP 4E67A 5DAYA 3KDRA 5AJ9A 1Q4OA 3HIHA 4DFWA 2N19A 1E33P 3LXQA 1AUKA 3HIKA 4XB0A 1UMWA 4N7VA 4N7ZA 4E9CA 3P37A 3P36A 4FDJA 4HABA 4WHKA 1HDHA 3GYWA 3HMJG 3FVHA 4NK7A 3P35A 1N2LA 4LKMA 4E9DA 1Q4KA 1A87A 1N2KA 2IA9A 1E2TA 4YYPA 1F32A 5DMSA 3HFDA 1FSUA 4O9WA 5LHZA 3Q1IA 2I9ZA 4H5XA 4CXKA 4G7NA 4LKLA 4J7BB 3RQ7A 4N9JA 1E3CP 3FS3A 2QZUA 4HCOA 4RCPA 1E2SP 4X9VA 3GYVA 4CYRA 4WHLA 2OJXA 4FDIA 4HY2A 5DNJA 1P49A 1F34B 4X9RA 4O6WA 2VKZG 2OGQA 2UV8G 2E50A 4CXUA 3P34A 2I9XA 3ED4A 4RS6A 4NKBA 5J19A 4CXSA 4X9WA 3P2WA 3P2ZA 3LM3A 4H71A 4WHHA 3BZIA 4O56A 5DMVC 3C5LA 4CYSA
chains in the Genus database with same CATH topology
1E1ZP 4NK7A 5DAYA 3KDRA 2QZUA 5AJ9A 3ED4A 1E2SP 4NKBA 1N2LA 3GYVA 4CYRA 1E33P 3LXQA 4CXSA 1N2KA 4FDIA 1AUKA 1P49A 1E2TA 3LM3A 3HFDA 4N7VA 1FSUA 4N7ZA 4FDJA 4CXKA 2VKZG 4G7NA 2UV8G 1HDHA 2E50A 3GYWA 4CXUA 3HMJG 4CYSA 4N9JA 1E3CP 3FS3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NK7 A;  4NKB A;  4G7N A;  4N7V A;  4N7Z A;  4N9J A; 
#chains in the Genus database with same CATH topology
 1E1Z P;  4E67 A;  5DAY A;  3KDR A;  5AJ9 A;  1Q4O A;  3HIH A;  4DFW A;  2N19 A;  1E33 P;  3LXQ A;  1AUK A;  3HIK A;  4XB0 A;  1UMW A;  4N7V A;  4N7Z A;  4E9C A;  3P37 A;  3P36 A;  4FDJ A;  4HAB A;  4WHK A;  1HDH A;  3GYW A;  3HMJ G;  3FVH A;  4NK7 A;  3P35 A;  1N2L A;  4LKM A;  4E9D A;  1Q4K A;  1A87 A;  1N2K A;  2IA9 A;  1E2T A;  4YYP A;  1F32 A;  5DMS A;  3HFD A;  1FSU A;  4O9W A;  5LHZ A;  3Q1I A;  2I9Z A;  4H5X A;  4CXK A;  4G7N A;  4LKL A;  4J7B B;  3RQ7 A;  4N9J A;  1E3C P;  3FS3 A;  2QZU A;  4HCO A;  4RCP A;  1E2S P;  4X9V A;  3GYV A;  4CYR A;  4WHL A;  2OJX A;  4FDI A;  4HY2 A;  5DNJ A;  1P49 A;  1F34 B;  4X9R A;  4O6W A;  2VKZ G;  2OGQ A;  2UV8 G;  2E50 A;  4CXU A;  3P34 A;  2I9X A;  3ED4 A;  4RS6 A;  4NKB A;  5J19 A;  4CXS A;  4X9W A;  3P2W A;  3P2Z A;  3LM3 A;  4H71 A;  4WHH A;  3BZI A;  4O56 A;  5DMV C;  3C5L A;  4CYS A; 
#chains in the Genus database with same CATH homology
 1E1Z P;  4NK7 A;  5DAY A;  3KDR A;  2QZU A;  5AJ9 A;  3ED4 A;  1E2S P;  4NKB A;  1N2L A;  3GYV A;  4CYR A;  1E33 P;  3LXQ A;  4CXS A;  1N2K A;  4FDI A;  1AUK A;  1P49 A;  1E2T A;  3LM3 A;  3HFD A;  4N7V A;  1FSU A;  4N7Z A;  4FDJ A;  4CXK A;  2VKZ G;  4G7N A;  2UV8 G;  1HDH A;  2E50 A;  3GYW A;  4CXU A;  3HMJ G;  4CYS A;  4N9J A;  1E3C P;  3FS3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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