4NNUA

Distinct structural features of tfam drive mitochondrial dna packaging versus transcriptional activation
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
193
structure length
193
Chain Sequence
SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords Transcription factor A, mitochondrial
publication title Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation.
pubmed doi rcsb
source organism Homo sapiens
total genus 68
structure length 193
sequence length 193
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00505 HMG_box HMG (high mobility group) box
A PF09011 HMG_box_2 HMG-box domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 4nnuA02
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 4nnuA01
1V64A 1NHNA 2HDZA 1J3CA 1I11A 1CKTA 1WXLA 2YULA 2RTUA 4Y60C 3TQ6A 3FGHA 1J5NA 2CRJA 1AABA 2YUKA 1HSNA 1E7JA 1K99A 1J3XA 3TMMA 1HMAA 1QRVA 1HMEA 2D7LA 1L8ZA 2LHJA 1LWMA 2CS1A 1J47A 4QR9A 1HSMA 1HMFA 1CG7A 4EUWA 1GT0D 1HRZA 3F27D 1V63A 1O4XB 1WGFA 4A3NA 2LE4A 1HRYA 1NHMA 4S2QD 2CO9A 2LEFA 3U2BC 1WZ6A 1J46A 2GZKA 4NODA 4NNUA 2EQZA 2CTOA 1J3DA 2YQIA 2E6OA 1L8YA 3NM9A 2LY4A 2YRQA
chains in the Genus database with same CATH superfamily
3ABOB 1V64A 1NHNA 2HDZA 1J3CA 1I11A 5H8WA 1CKTA 1WXLA 2YULA 2RTUA 4Y60C 3TQ6A 3FGHA 1J5NA 2CRJA 1AABA 2YUKA 1HSNA 4KQEA 3ABRB 1E7JA 1J3XA 3TMMA 1HMAA 1QRVA 1K99A 1HMEA 2D7LA 1L8ZA 2LHJA 1LWMA 2CS1A 1J47A 4QR9A 1HSMA 1HMFA 1CG7A 4EUWA 1GT0D 1HRZA 3F27D 1V63A 1O4XB 1WGFA 4A3NA 2LE4A 1HRYA 1NHMA 4S2QD 2CO9A 2LEFA 3U2BC 1WZ6A 2VSFA 1J46A 2GZKA 4NODA 4A15A 4NNUA 2EQZA 3ABSB 2CTOA 3ANYB 1J3DA 3AO0B 2YQIA 2E6OA 1L8YA 3NM9A 2LY4A 2YRQA
chains in the Genus database with same CATH topology
1V64A 1NHNA 2HDZA 1J3CA 1I11A 1CKTA 1WXLA 2YULA 2RTUA 4Y60C 3TQ6A 3FGHA 1J5NA 2CRJA 1AABA 2YUKA 1HSNA 1E7JA 1K99A 1J3XA 3TMMA 1HMAA 1QRVA 1HMEA 2D7LA 1L8ZA 2LHJA 1LWMA 2CS1A 1J47A 4QR9A 1HSMA 1HMFA 1CG7A 4EUWA 1GT0D 1HRZA 3F27D 1V63A 1O4XB 1WGFA 4A3NA 2LE4A 1HRYA 1NHMA 4S2QD 2CO9A 2LEFA 3U2BC 1WZ6A 1J46A 2GZKA 4NODA 4NNUA 2EQZA 2CTOA 1J3DA 2YQIA 2E6OA 1L8YA 3NM9A 2LY4A 2YRQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V64 A;  1NHN A;  2HDZ A;  1J3C A;  1I11 A;  1CKT A;  1WXL A;  2YUL A;  2RTU A;  4Y60 C;  3TQ6 A;  3FGH A;  1J5N A;  2CRJ A;  1AAB A;  2YUK A;  1HSN A;  1E7J A;  1K99 A;  1J3X A;  3TMM A;  1HMA A;  1QRV A;  1HME A;  2D7L A;  1L8Z A;  2LHJ A;  1LWM A;  2CS1 A;  1J47 A;  4QR9 A;  1HSM A;  1HMF A;  1CG7 A;  4EUW A;  1GT0 D;  1HRZ A;  3F27 D;  1V63 A;  1O4X B;  1WGF A;  4A3N A;  2LE4 A;  1HRY A;  1NHM A;  4S2Q D;  2CO9 A;  2LEF A;  3U2B C;  1WZ6 A;  1J46 A;  2GZK A;  4NOD A;  4NNU A;  2EQZ A;  2CTO A;  1J3D A;  2YQI A;  2E6O A;  1L8Y A;  3NM9 A;  2LY4 A;  2YRQ A; 
#chains in the Genus database with same CATH topology
 3ABO B;  1V64 A;  1NHN A;  2HDZ A;  1J3C A;  1I11 A;  5H8W A;  1CKT A;  1WXL A;  2YUL A;  2RTU A;  4Y60 C;  3TQ6 A;  3FGH A;  1J5N A;  2CRJ A;  1AAB A;  2YUK A;  1HSN A;  4KQE A;  3ABR B;  1E7J A;  1J3X A;  3TMM A;  1HMA A;  1QRV A;  1K99 A;  1HME A;  2D7L A;  1L8Z A;  2LHJ A;  1LWM A;  2CS1 A;  1J47 A;  4QR9 A;  1HSM A;  1HMF A;  1CG7 A;  4EUW A;  1GT0 D;  1HRZ A;  3F27 D;  1V63 A;  1O4X B;  1WGF A;  4A3N A;  2LE4 A;  1HRY A;  1NHM A;  4S2Q D;  2CO9 A;  2LEF A;  3U2B C;  1WZ6 A;  2VSF A;  1J46 A;  2GZK A;  4NOD A;  4A15 A;  4NNU A;  2EQZ A;  3ABS B;  2CTO A;  3ANY B;  1J3D A;  3AO0 B;  2YQI A;  2E6O A;  1L8Y A;  3NM9 A;  2LY4 A;  2YRQ A; 
#chains in the Genus database with same CATH homology
 1V64 A;  1NHN A;  2HDZ A;  1J3C A;  1I11 A;  1CKT A;  1WXL A;  2YUL A;  2RTU A;  4Y60 C;  3TQ6 A;  3FGH A;  1J5N A;  2CRJ A;  1AAB A;  2YUK A;  1HSN A;  1E7J A;  1K99 A;  1J3X A;  3TMM A;  1HMA A;  1QRV A;  1HME A;  2D7L A;  1L8Z A;  2LHJ A;  1LWM A;  2CS1 A;  1J47 A;  4QR9 A;  1HSM A;  1HMF A;  1CG7 A;  4EUW A;  1GT0 D;  1HRZ A;  3F27 D;  1V63 A;  1O4X B;  1WGF A;  4A3N A;  2LE4 A;  1HRY A;  1NHM A;  4S2Q D;  2CO9 A;  2LEF A;  3U2B C;  1WZ6 A;  1J46 A;  2GZK A;  4NOD A;  4NNU A;  2EQZ A;  2CTO A;  1J3D A;  2YQI A;  2E6O A;  1L8Y A;  3NM9 A;  2LY4 A;  2YRQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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