4NWJA

Crystal structure of phosphopglycerate mutase from staphylococcus aureus in 3-phosphoglyceric acid bound form.
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
Knots found
sequence length
504
structure length
504
Chain Sequence
AKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Complete catalytic cycle of cofactor-independent phosphoglycerate mutase involves a spring-loaded mechanism
pubmed doi rcsb
source organism Staphylococcus aureus subsp. aureus
total genus 189
structure length 504
sequence length 504
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2013-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4nwjA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4nwjA02
3SZYA 4CXUA 2X98A 3NKMA 3IDDA 3WAYA 4CYSA 3WAWA 2GLQA 1AJCA 2W8DA 2GA3A 5LRMA 4KJGA 3T00A 1E3CP 2W5QA 3BDGA 3BDGB 2ANHA 1ANJA 5GRRA 1O98A 3ED4A 2W5WA 4ZGAA 4CXKA 1E2SP 4LREA 1SHQA 4FDIA 1Y6VA 4GTYA 1Y7AA 4UPLA 3WBHA 4MHXA 1N2KA 3MK0A 1P49A 3NVLA 4LRAA 1AJAA 5LIAA 1AJBA 1EW9A 2QZUA 1ZEBA 5K4PA 5AJ9A 3TWZA 4MIVA 3BDFA 4UPHA 2GSNA 3T02A 1URBA 3NKNA 1ALKA 2GSUA 5TJ3A 3UN3A 1KH7A 3MK2A 1KHLA 1ZEFA 2W8SA 2W5RA 4NWXA 1ZEDA 4KAVA 3B5QA 5LRNA 3UN5A 1K7HA 5IJSA 3DPCA 1O99A 4UOPA 3KD8A 5L0KA 4LR2A 4QAXA 5DLWA 4GTWA 1KH5A 3A52A 4B56A 4MY4A 4LR8A 5DLTA 1EJJA 4ZG7A 3NKRA 2GSOA 3UN2A 4CYRA 1EQJA 4LR7A 1E1ZP 3SZZA 1HDHA 3NKQA 2IUCA 3CMRA 3TX0A 5EGEA 3DYCA 5GOVA 1ED9A 1ALHA 2VQRA 1EW2A 1KHKA 4UPIA 1KH9A 5DLVA 3IGYB 1ALIA 5C66A 4KM4A 3Q3QA 4UORA 3IGZB 4UOOA 1ALJA 3WAXA 2XR9A 1HQAA 3BDHA 4LRFA 2W5SA 1ED8A 4KJDA 1B8JA 1ANIA 3TG0A 1URAA 2XRGA 4FDJA 4UPKA 1AJDA 1AUKA 1E33P 2D1GA 2ZKTA 4LRBA 3T01A 3WAVA 3MK1A 3M8YA 3UNYA 3M8ZA 4LRCA 2W5TA 1KHJA 3OT9A 4N7TA 1N2LA 4GTXA 3LXQA 1ELZA 3NKPA 2IFYA 5EGHA 5INHA 4ZG9A 4LR9A 1HJKA 2G9YA 1FSUA 5IJQA 5L0BA 2RH6A 4NWJA 1SHNA 2IUCB 2W5VA 4KAYA 4CXSA 4LRDA 4ZG6A 1EW8A 3NKOA 4YR1A 4TN0A 1ELXA 4LQYA 1KHNA 1KH4A 5HRTA 2W5XA 4GTZA 5KXAA 1EI6A 5LQQA 3M7VA 3E2DA 5L0EA 3UO0A 1ELYA 3M8WA
chains in the Genus database with same CATH superfamily
3SZYA 4CXUA 2X98A 3NKMA 3IDDA 3WAYA 4CYSA 3WAWA 2GLQA 1AJCA 2W8DA 2GA3A 5LRMA 4KJGA 3T00A 1E3CP 2W5QA 3BDGA 3BDGB 2ANHA 1ANJA 5GRRA 1O98A 3ED4A 2W5WA 4ZGAA 4CXKA 1E2SP 4LREA 1SHQA 4FDIA 1Y6VA 4GTYA 1Y7AA 4UPLA 3WBHA 4MHXA 1N2KA 3MK0A 1P49A 3NVLA 4LRAA 1AJAA 5LIAA 1AJBA 1EW9A 2QZUA 1ZEBA 5K4PA 5AJ9A 3TWZA 4MIVA 3BDFA 4UPHA 2GSNA 3T02A 1URBA 3NKNA 1ALKA 2GSUA 5TJ3A 3UN3A 1KH7A 3MK2A 1KHLA 1ZEFA 2W8SA 2W5RA 4NWXA 1ZEDA 4KAVA 3B5QA 5LRNA 3UN5A 1K7HA 5IJSA 3DPCA 1O99A 4UOPA 3KD8A 5L0KA 4LR2A 4QAXA 5DLWA 4GTWA 1KH5A 3A52A 4B56A 4MY4A 4LR8A 5DLTA 1EJJA 4ZG7A 3NKRA 2GSOA 3UN2A 4CYRA 1EQJA 4LR7A 1E1ZP 3SZZA 1HDHA 3NKQA 2IUCA 3CMRA 3TX0A 5EGEA 3DYCA 5GOVA 1ED9A 1ALHA 2VQRA 1EW2A 1KHKA 4UPIA 1KH9A 5DLVA 3IGYB 1ALIA 5C66A 4KM4A 3Q3QA 4UORA 3IGZB 4UOOA 1ALJA 3WAXA 2XR9A 1HQAA 3BDHA 4LRFA 2W5SA 1ED8A 4KJDA 1B8JA 1ANIA 3TG0A 1URAA 2XRGA 4FDJA 4UPKA 1AJDA 1AUKA 1E33P 2D1GA 2ZKTA 4LRBA 3T01A 3WAVA 3MK1A 3M8YA 3UNYA 3M8ZA 4LRCA 2W5TA 1KHJA 3OT9A 4N7TA 1N2LA 4GTXA 3LXQA 1ELZA 3NKPA 2IFYA 5EGHA 5INHA 4ZG9A 4LR9A 1HJKA 2G9YA 1FSUA 5IJQA 5L0BA 2RH6A 4NWJA 1SHNA 2IUCB 2W5VA 4KAYA 4CXSA 4LRDA 4ZG6A 1EW8A 3NKOA 4YR1A 4TN0A 1ELXA 4LQYA 1KHNA 1KH4A 5HRTA 2W5XA 4GTZA 5KXAA 1EI6A 5LQQA 3M7VA 3E2DA 5L0EA 3UO0A 1ELYA 3M8WA
chains in the Genus database with same CATH topology
3SZYA 4CXUA 2X98A 3NKMA 3IDDA 3WAYA 4CYSA 3WAWA 2GLQA 1AJCA 2W8DA 2GA3A 5LRMA 4KJGA 3T00A 1E3CP 2W5QA 3BDGA 3BDGB 2ANHA 1ANJA 5GRRA 1O98A 3ED4A 2W5WA 4ZGAA 4CXKA 1E2SP 4LREA 1SHQA 4FDIA 1Y6VA 4GTYA 1Y7AA 4UPLA 3WBHA 4MHXA 1N2KA 3MK0A 1P49A 3NVLA 4LRAA 1AJAA 5LIAA 1AJBA 1EW9A 2QZUA 1ZEBA 5K4PA 5AJ9A 3TWZA 4MIVA 3BDFA 4UPHA 2GSNA 3T02A 1URBA 3NKNA 1ALKA 2GSUA 5TJ3A 3UN3A 1KH7A 3MK2A 1KHLA 1ZEFA 2W8SA 2W5RA 4NWXA 1ZEDA 4KAVA 3B5QA 5LRNA 3UN5A 1K7HA 5IJSA 3DPCA 1O99A 4UOPA 3KD8A 5L0KA 4LR2A 4QAXA 5DLWA 4GTWA 1KH5A 3A52A 4B56A 4MY4A 4LR8A 5DLTA 1EJJA 4ZG7A 3NKRA 2GSOA 3UN2A 4CYRA 1EQJA 4LR7A 1E1ZP 3SZZA 1HDHA 3NKQA 2IUCA 3CMRA 3TX0A 5EGEA 3DYCA 5GOVA 1ED9A 1ALHA 2VQRA 1EW2A 1KHKA 4UPIA 1KH9A 5DLVA 3IGYB 1ALIA 5C66A 4KM4A 3Q3QA 4UORA 3IGZB 4UOOA 1ALJA 3WAXA 2XR9A 1HQAA 3BDHA 4LRFA 2W5SA 1ED8A 4KJDA 1B8JA 1ANIA 3TG0A 1URAA 2XRGA 4FDJA 4UPKA 1AJDA 1AUKA 1E33P 2D1GA 2ZKTA 4LRBA 3T01A 3WAVA 3MK1A 3M8YA 3UNYA 3M8ZA 4LRCA 2W5TA 1KHJA 3OT9A 4N7TA 1N2LA 4GTXA 3LXQA 1ELZA 3NKPA 2IFYA 5EGHA 5INHA 4ZG9A 4LR9A 1HJKA 2G9YA 1FSUA 5IJQA 5L0BA 2RH6A 4NWJA 1SHNA 2IUCB 2W5VA 4KAYA 4CXSA 4LRDA 4ZG6A 1EW8A 3NKOA 4YR1A 4TN0A 1ELXA 4LQYA 1KHNA 1KH4A 5HRTA 2W5XA 4GTZA 5KXAA 1EI6A 5LQQA 3M7VA 3E2DA 5L0EA 3UO0A 1ELYA 3M8WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SZY A;  4CXU A;  2X98 A;  3NKM A;  3IDD A;  3WAY A;  4CYS A;  3WAW A;  2GLQ A;  1AJC A;  2W8D A;  2GA3 A;  5LRM A;  4KJG A;  3T00 A;  1E3C P;  2W5Q A;  3BDG A;  3BDG B;  2ANH A;  1ANJ A;  5GRR A;  1O98 A;  3ED4 A;  2W5W A;  4ZGA A;  4CXK A;  1E2S P;  4LRE A;  1SHQ A;  4FDI A;  1Y6V A;  4GTY A;  1Y7A A;  4UPL A;  3WBH A;  4MHX A;  1N2K A;  3MK0 A;  1P49 A;  3NVL A;  4LRA A;  1AJA A;  5LIA A;  1AJB A;  1EW9 A;  2QZU A;  1ZEB A;  5K4P A;  5AJ9 A;  3TWZ A;  4MIV A;  3BDF A;  4UPH A;  2GSN A;  3T02 A;  1URB A;  3NKN A;  1ALK A;  2GSU A;  5TJ3 A;  3UN3 A;  1KH7 A;  3MK2 A;  1KHL A;  1ZEF A;  2W8S A;  2W5R A;  4NWX A;  1ZED A;  4KAV A;  3B5Q A;  5LRN A;  3UN5 A;  1K7H A;  5IJS A;  3DPC A;  1O99 A;  4UOP A;  3KD8 A;  5L0K A;  4LR2 A;  4QAX A;  5DLW A;  4GTW A;  1KH5 A;  3A52 A;  4B56 A;  4MY4 A;  4LR8 A;  5DLT A;  1EJJ A;  4ZG7 A;  3NKR A;  2GSO A;  3UN2 A;  4CYR A;  1EQJ A;  4LR7 A;  1E1Z P;  3SZZ A;  1HDH A;  3NKQ A;  2IUC A;  3CMR A;  3TX0 A;  5EGE A;  3DYC A;  5GOV A;  1ED9 A;  1ALH A;  2VQR A;  1EW2 A;  1KHK A;  4UPI A;  1KH9 A;  5DLV A;  3IGY B;  1ALI A;  5C66 A;  4KM4 A;  3Q3Q A;  4UOR A;  3IGZ B;  4UOO A;  1ALJ A;  3WAX A;  2XR9 A;  1HQA A;  3BDH A;  4LRF A;  2W5S A;  1ED8 A;  4KJD A;  1B8J A;  1ANI A;  3TG0 A;  1URA A;  2XRG A;  4FDJ A;  4UPK A;  1AJD A;  1AUK A;  1E33 P;  2D1G A;  2ZKT A;  4LRB A;  3T01 A;  3WAV A;  3MK1 A;  3M8Y A;  3UNY A;  3M8Z A;  4LRC A;  2W5T A;  1KHJ A;  3OT9 A;  4N7T A;  1N2L A;  4GTX A;  3LXQ A;  1ELZ A;  3NKP A;  2IFY A;  5EGH A;  5INH A;  4ZG9 A;  4LR9 A;  1HJK A;  2G9Y A;  1FSU A;  5IJQ A;  5L0B A;  2RH6 A;  4NWJ A;  1SHN A;  2IUC B;  2W5V A;  4KAY A;  4CXS A;  4LRD A;  4ZG6 A;  1EW8 A;  3NKO A;  4YR1 A;  4TN0 A;  1ELX A;  4LQY A;  1KHN A;  1KH4 A;  5HRT A;  2W5X A;  4GTZ A;  5KXA A;  1EI6 A;  5LQQ A;  3M7V A;  3E2D A;  5L0E A;  3UO0 A;  1ELY A;  3M8W A; 
#chains in the Genus database with same CATH topology
 3SZY A;  4CXU A;  2X98 A;  3NKM A;  3IDD A;  3WAY A;  4CYS A;  3WAW A;  2GLQ A;  1AJC A;  2W8D A;  2GA3 A;  5LRM A;  4KJG A;  3T00 A;  1E3C P;  2W5Q A;  3BDG A;  3BDG B;  2ANH A;  1ANJ A;  5GRR A;  1O98 A;  3ED4 A;  2W5W A;  4ZGA A;  4CXK A;  1E2S P;  4LRE A;  1SHQ A;  4FDI A;  1Y6V A;  4GTY A;  1Y7A A;  4UPL A;  3WBH A;  4MHX A;  1N2K A;  3MK0 A;  1P49 A;  3NVL A;  4LRA A;  1AJA A;  5LIA A;  1AJB A;  1EW9 A;  2QZU A;  1ZEB A;  5K4P A;  5AJ9 A;  3TWZ A;  4MIV A;  3BDF A;  4UPH A;  2GSN A;  3T02 A;  1URB A;  3NKN A;  1ALK A;  2GSU A;  5TJ3 A;  3UN3 A;  1KH7 A;  3MK2 A;  1KHL A;  1ZEF A;  2W8S A;  2W5R A;  4NWX A;  1ZED A;  4KAV A;  3B5Q A;  5LRN A;  3UN5 A;  1K7H A;  5IJS A;  3DPC A;  1O99 A;  4UOP A;  3KD8 A;  5L0K A;  4LR2 A;  4QAX A;  5DLW A;  4GTW A;  1KH5 A;  3A52 A;  4B56 A;  4MY4 A;  4LR8 A;  5DLT A;  1EJJ A;  4ZG7 A;  3NKR A;  2GSO A;  3UN2 A;  4CYR A;  1EQJ A;  4LR7 A;  1E1Z P;  3SZZ A;  1HDH A;  3NKQ A;  2IUC A;  3CMR A;  3TX0 A;  5EGE A;  3DYC A;  5GOV A;  1ED9 A;  1ALH A;  2VQR A;  1EW2 A;  1KHK A;  4UPI A;  1KH9 A;  5DLV A;  3IGY B;  1ALI A;  5C66 A;  4KM4 A;  3Q3Q A;  4UOR A;  3IGZ B;  4UOO A;  1ALJ A;  3WAX A;  2XR9 A;  1HQA A;  3BDH A;  4LRF A;  2W5S A;  1ED8 A;  4KJD A;  1B8J A;  1ANI A;  3TG0 A;  1URA A;  2XRG A;  4FDJ A;  4UPK A;  1AJD A;  1AUK A;  1E33 P;  2D1G A;  2ZKT A;  4LRB A;  3T01 A;  3WAV A;  3MK1 A;  3M8Y A;  3UNY A;  3M8Z A;  4LRC A;  2W5T A;  1KHJ A;  3OT9 A;  4N7T A;  1N2L A;  4GTX A;  3LXQ A;  1ELZ A;  3NKP A;  2IFY A;  5EGH A;  5INH A;  4ZG9 A;  4LR9 A;  1HJK A;  2G9Y A;  1FSU A;  5IJQ A;  5L0B A;  2RH6 A;  4NWJ A;  1SHN A;  2IUC B;  2W5V A;  4KAY A;  4CXS A;  4LRD A;  4ZG6 A;  1EW8 A;  3NKO A;  4YR1 A;  4TN0 A;  1ELX A;  4LQY A;  1KHN A;  1KH4 A;  5HRT A;  2W5X A;  4GTZ A;  5KXA A;  1EI6 A;  5LQQ A;  3M7V A;  3E2D A;  5L0E A;  3UO0 A;  1ELY A;  3M8W A; 
#chains in the Genus database with same CATH homology
 3SZY A;  4CXU A;  2X98 A;  3NKM A;  3IDD A;  3WAY A;  4CYS A;  3WAW A;  2GLQ A;  1AJC A;  2W8D A;  2GA3 A;  5LRM A;  4KJG A;  3T00 A;  1E3C P;  2W5Q A;  3BDG A;  3BDG B;  2ANH A;  1ANJ A;  5GRR A;  1O98 A;  3ED4 A;  2W5W A;  4ZGA A;  4CXK A;  1E2S P;  4LRE A;  1SHQ A;  4FDI A;  1Y6V A;  4GTY A;  1Y7A A;  4UPL A;  3WBH A;  4MHX A;  1N2K A;  3MK0 A;  1P49 A;  3NVL A;  4LRA A;  1AJA A;  5LIA A;  1AJB A;  1EW9 A;  2QZU A;  1ZEB A;  5K4P A;  5AJ9 A;  3TWZ A;  4MIV A;  3BDF A;  4UPH A;  2GSN A;  3T02 A;  1URB A;  3NKN A;  1ALK A;  2GSU A;  5TJ3 A;  3UN3 A;  1KH7 A;  3MK2 A;  1KHL A;  1ZEF A;  2W8S A;  2W5R A;  4NWX A;  1ZED A;  4KAV A;  3B5Q A;  5LRN A;  3UN5 A;  1K7H A;  5IJS A;  3DPC A;  1O99 A;  4UOP A;  3KD8 A;  5L0K A;  4LR2 A;  4QAX A;  5DLW A;  4GTW A;  1KH5 A;  3A52 A;  4B56 A;  4MY4 A;  4LR8 A;  5DLT A;  1EJJ A;  4ZG7 A;  3NKR A;  2GSO A;  3UN2 A;  4CYR A;  1EQJ A;  4LR7 A;  1E1Z P;  3SZZ A;  1HDH A;  3NKQ A;  2IUC A;  3CMR A;  3TX0 A;  5EGE A;  3DYC A;  5GOV A;  1ED9 A;  1ALH A;  2VQR A;  1EW2 A;  1KHK A;  4UPI A;  1KH9 A;  5DLV A;  3IGY B;  1ALI A;  5C66 A;  4KM4 A;  3Q3Q A;  4UOR A;  3IGZ B;  4UOO A;  1ALJ A;  3WAX A;  2XR9 A;  1HQA A;  3BDH A;  4LRF A;  2W5S A;  1ED8 A;  4KJD A;  1B8J A;  1ANI A;  3TG0 A;  1URA A;  2XRG A;  4FDJ A;  4UPK A;  1AJD A;  1AUK A;  1E33 P;  2D1G A;  2ZKT A;  4LRB A;  3T01 A;  3WAV A;  3MK1 A;  3M8Y A;  3UNY A;  3M8Z A;  4LRC A;  2W5T A;  1KHJ A;  3OT9 A;  4N7T A;  1N2L A;  4GTX A;  3LXQ A;  1ELZ A;  3NKP A;  2IFY A;  5EGH A;  5INH A;  4ZG9 A;  4LR9 A;  1HJK A;  2G9Y A;  1FSU A;  5IJQ A;  5L0B A;  2RH6 A;  4NWJ A;  1SHN A;  2IUC B;  2W5V A;  4KAY A;  4CXS A;  4LRD A;  4ZG6 A;  1EW8 A;  3NKO A;  4YR1 A;  4TN0 A;  1ELX A;  4LQY A;  1KHN A;  1KH4 A;  5HRT A;  2W5X A;  4GTZ A;  5KXA A;  1EI6 A;  5LQQ A;  3M7V A;  3E2D A;  5L0E A;  3UO0 A;  1ELY A;  3M8W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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