The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
96
|
structure length |
96
|
Chain Sequence |
PHMTVAEDKTFQYIRQHHSNFSRIHVLRILPYLSCLTTSDQDRLRATYERWGNQDTLLELFTSLRRRNGWVHSLIGALRACELSGLADEVARIYHS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Antiviral protein
|
| molecule keywords |
mitochondrial antiviral signaling protein (MAVS)
|
| publication title |
Structural basis for the prion-like MAVS filaments in antiviral innate immunity.
pubmed rcsb |
| source organism |
Equus caballus
|
| total genus |
38
|
| structure length |
96
|
| sequence length |
96
|
| ec nomenclature | |
| pdb deposition date | 2014-01-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16739 | CARD_2 | Caspase recruitment domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas |
#chains in the Genus database with same CATH superfamily 4D8O A; 2D96 A; 2G7R A; 4M9S A; 2OF5 A; 4RHW A; 2KM6 A; 4LWD A; 4F44 A; 4A2W A; 1NGR A; 4N1K A; 2M5V A; 2GF5 A; 2HM2 Q; 4O9F A; 4A2Q A; 2N80 A; 4E9M A; 2O71 A; 4O9L A; 2B1W A; 4ZBW A; 1YGO A; 4IZ5 E; 4P4H A; 2BBZ A; 4M9Z A; 3EZQ A; 4JQW A; 1A1Z A; 2LWD A; 2F1S A; 2N83 A; 1Z6T A; 2VGQ A; 1UCP A; 2KN6 A; 2YGS A; 2YQF A; 2LWE A; 4N1L A; 3LQQ A; 4O7Q A; 4EWI A; 1D2Z A; 4JUP A; 3T6P A; 3MOP A; 3MOP G; 2MPC A; 1E41 A; 1WMG A; 3J63 A; 3CL3 A; 1WH4 A; 4M9X A; 4DWN A; 2DBH A; 2DO9 A; 1ICH A; 4FH0 A; 2DBD A; 2NZ7 A; 2N1F A; 2A9I A; 2NSN A; 3KAT A; 3MOP K; 3J6J A; 4N1J A; 4F42 A; 2YU0 A; 2LS7 A; 2DBG A; 2YVI A; 1FAD A; 3YGS C; 2L9M A; 1CWW A; 3QF2 A; 4QOB A; 2A5Y B; 2L6A A; 2MN4 A; 4O6X A; 1DGN A; 1DDF A; 2P1H A; 2N97 A; 4IZA B; 2OF5 H; 1C15 A; 2MS8 A; 4I16 A; 3YGS P; 2BBR A; 1CY5 A; 3EZQ B; 4IZ7 B; 2NAQ A; 4P4H I; 1A1W A; 4RHW E; 1N3K A; 1WXP A; 4NQK A; 4UZ0 A; 2N7Z A; 1D2Z B; 3CRD A; 1E3Y A; 2MB9 A; 3LQR A; 1PN5 A; 2DBF A; 2IB1 A; 2MS7 A; 2N00 A; #chains in the Genus database with same CATH topology 4D8O A; 2D96 A; 2G7R A; 4M9S A; 2OF5 A; 4RHW A; 2KM6 A; 4LWD A; 4F44 A; 4A2W A; 1NGR A; 2MJM A; 4N1K A; 2M5V A; 2GF5 A; 2HM2 Q; 4O9F A; 4A2Q A; 2N80 A; 4E9M A; 2O71 A; 4O9L A; 2B1W A; 4ZBW A; 1YGO A; 4IZ5 E; 4P4H A; 2BBZ A; 4M9Z A; 3EZQ A; 4JQW A; 1A1Z A; 2LWD A; 2F1S A; 2N83 A; 1Z6T A; 2VGQ A; 2XV9 A; 1UCP A; 2KN6 A; 2YGS A; 2YQF A; 2LWE A; 4N1L A; 3LQQ A; 4O7Q A; 4EWI A; 1D2Z A; 4JUP A; 3T6P A; 3MOP A; 3MOP G; 2MPC A; 1E41 A; 1WMG A; 3J63 A; 3CL3 A; 1WH4 A; 4M9X A; 4DWN A; 2DBH A; 2DO9 A; 1ICH A; 4FH0 A; 2DBD A; 2NZ7 A; 2N1F A; 2A9I A; 2NSN A; 3KAT A; 3MOP K; 3J6J A; 4N1J A; 4F42 A; 2YU0 A; 2LS7 A; 2DBG A; 2YVI A; 1FAD A; 3YGS C; 2L9M A; 1CWW A; 3QF2 A; 4QOB A; 2A5Y B; 2L6A A; 2MN4 A; 4O6X A; 1DGN A; 1DDF A; 2P1H A; 2N97 A; 4IZA B; 2OF5 H; 1C15 A; 2MS8 A; 4I16 A; 3YGS P; 2BBR A; 1CY5 A; 3EZQ B; 4IZ7 B; 2NAQ A; 4P4H I; 1A1W A; 4RHW E; 1N3K A; 1WXP A; 4NQK A; 4UZ0 A; 2N7Z A; 1D2Z B; 3CRD A; 1E3Y A; 2MB9 A; 3LQR A; 1PN5 A; 2DBF A; 2IB1 A; 2MS7 A; 2N00 A; #chains in the Genus database with same CATH homology 4D8O A; 2D96 A; 2G7R A; 4M9S A; 2OF5 A; 4RHW A; 2KM6 A; 4LWD A; 4F44 A; 4A2W A; 1NGR A; 2MJM A; 4N1K A; 2M5V A; 2GF5 A; 2HM2 Q; 4O9F A; 4A2Q A; 2N80 A; 4E9M A; 2O71 A; 4O9L A; 2B1W A; 4ZBW A; 1YGO A; 4IZ5 E; 4P4H A; 2BBZ A; 4M9Z A; 3EZQ A; 4JQW A; 1A1Z A; 2LWD A; 2F1S A; 2N83 A; 1Z6T A; 2VGQ A; 2XV9 A; 1UCP A; 2KN6 A; 2YGS A; 2YQF A; 2LWE A; 4N1L A; 3LQQ A; 4O7Q A; 4EWI A; 1D2Z A; 4JUP A; 3T6P A; 3MOP A; 3MOP G; 2MPC A; 1E41 A; 1WMG A; 3J63 A; 3CL3 A; 1WH4 A; 4M9X A; 4DWN A; 2DBH A; 2DO9 A; 1ICH A; 4FH0 A; 2DBD A; 2NZ7 A; 2N1F A; 2A9I A; 2NSN A; 3KAT A; 3MOP K; 3J6J A; 4N1J A; 4F42 A; 2YU0 A; 2LS7 A; 2DBG A; 2YVI A; 1FAD A; 3YGS C; 2L9M A; 1CWW A; 3QF2 A; 4QOB A; 2A5Y B; 2L6A A; 2MN4 A; 4O6X A; 1DGN A; 1DDF A; 2P1H A; 2N97 A; 4IZA B; 2OF5 H; 1C15 A; 2MS8 A; 4I16 A; 3YGS P; 2BBR A; 1CY5 A; 3EZQ B; 4IZ7 B; 2NAQ A; 4P4H I; 1A1W A; 4RHW E; 1N3K A; 1WXP A; 4NQK A; 4UZ0 A; 2N7Z A; 1D2Z B; 3CRD A; 1E3Y A; 2MB9 A; 3LQR A; 1PN5 A; 2DBF A; 2IB1 A; 2MS7 A; 2N00 A;
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