The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
116
|
Knots found |
|
sequence length |
378
|
structure length |
371
|
Chain Sequence |
AAHQEFARRLALFSINVYGKLSGQKPGENIVFSPFSIQTCAAMARLGAENETATQLDQGLGLASSDPEQIAHSFHQVLAAYQDSQILRIANKIFVMDGYQLRQEFDQLLSKQFLSAAQSVDFSKNVQAAATINNWVEQRTNHLIKDLVPADVLNSESRLVLVNAIHFKGTWQHQFAKHLTRPDTFHLDGERTVQVPMMSLKERFRYADLPALDAMALELPYKDSDLSMLIVLPNTKTGLPALEEKLRLTTLSQITQSLYETKVALKLPRFKAEFQVELSEVFQKLGMSRMFSDQAEFGKMLQSPEPLKVSAIIHKAFIEVNEEGTEAAAATGMAVRRKEPIEFFADHPFTYVLVHQKDLPLFWGSVVRLEE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase inhibitor
|
| molecule keywords |
Serine protease inhibitor 4, isoform B
|
| publication title |
High resolution structure of cleaved Serpin 42 Da from Drosophila melanogaster.
pubmed doi rcsb |
| source organism |
Drosophila melanogaster
|
| total genus |
116
|
| structure length |
371
|
| sequence length |
378
|
| other databases |
 KnotProt 2.0: Artifct S 41 -31 -3
|
| ec nomenclature | |
| pdb deposition date | 2014-02-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00079 | Serpin | Serpin (serine protease inhibitor) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Alpha-1-antitrypsin; domain 1 | Alpha-1-antitrypsin, domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Antithrombin; Chain I, domain 2 | Antithrombin, subunit I, domain 2 |
#chains in the Genus database with same CATH superfamily 1XU8 A; 1DB2 A; 3NE4 A; 2XN6 A; 2B4X I; 1DZG I; 1OO8 A; 4AU2 A; 1K9O I; 4ZK0 A; 4G8O A; 1AZX I; 3EVJ I; 3LE2 A; 4C49 A; 2ARQ A; 1ATU A; 1EZX A; 1BY7 A; 2WXY C; 2BEH I; 2ZV6 A; 4AU3 A; 1XQG A; 4AFX A; 2B4X L; 1MTP A; 3T1P A; 1JTI A; 2PEF A; 3ZHA A; 4IC0 A; 1R1L I; 4G8R A; 4EB1 I; 1C5G A; 2BEH L; 1XQJ A; 2XN3 A; 1M93 B; 4C41 A; 3DRU A; 2ACH A; 2D26 A; 1DVN A; 2H4Q A; 2OL2 A; 1JMJ A; 1TB6 I; 8API A; 4DY7 C; 1T1F A; 4P0O A; 3NDD A; 2XN5 A; 3CVM A; 3PZF A; 1ATH A; 4AJU A; 1B3K A; 2DUT A; 5BRR I; 1OPH A; 1E05 I; 2WXZ A; 1KCT A; 2XN7 A; 3DRM A; 4RSQ A; 4BB2 A; 1OVA A; 1E03 I; 1DZG L; 1C8O A; 1AS4 A; 7API A; 5HGC A; 1IZ2 A; 2V95 A; 3F02 A; 3R4L A; 2RIV A; 3H5C A; 1SEK A; 2R9Y A; 1LJ5 A; 2H4P A; 4R9I A; 4YIA A; 4AQH A; 1JRR A; 3UT3 A; 1OC0 A; 1UHG A; 3Q03 A; 2RIW A; 2OAY A; 1OYH I; 2QUG A; 1IMV A; 2WY1 A; 4EB1 L; 5INW A; 4GA7 A; 3VVJ A; 2HI9 A; 3DLW A; 1SNG A; 2VDX A; 1ATT A; 4DY0 A; 3KCG I; 4PYW A; 4AU3 B; 9API A; 1OYH L; 5CDZ A; 1PSI A; 3CWM A; 2WXW A; 1F0C A; 3Q02 A; 1QMN A; 3CWL A; 2CEO A; 2ZNH A; 1DZH I; 2GD4 C; 2PEE A; 3CAA A; 1JVQ I; 1HP7 A; 2HIJ I; 3F5N A; 3LW2 A; 9PAI A; 3B9F I; 2ANT I; 5EI0 A; 4IF8 A; 4ROB A; 1QMB A; 3OZQ A; 2ARR A; 1JJO C; 2WY0 C; 4P0F A; 1BR8 I; 3DY0 A; 1DZH L; 4ZK3 A; 2HIJ L; 4ROA A; 4Y3K A; 5IO1 A; 5CDX A; 2VH4 A; 4Y40 A; 1D5S A; 1SR5 A; 1NQ9 I; 2WXX A; 5CE0 A; 3F1S A; 1ANT I; 3EOX A; 4AJT A; 1HLE A; 1YXA A; 1OVA B; 3FGQ A; 1E04 I; 3STO A; 1LQ8 A; 1QLP A; 4CAA A; 4AU4 A; 4DTE A; 1DVM A; 1LK6 I; 2WXZ C; 3NDA A; 3NDF A; 4X30 A; 1OVA C; 2B5T I; 3PB1 I; 4KDS A; 2VDY A; 2H4R A; 1A7C A; 1JMO A; 5C98 A; 4RO9 A; 1WZ9 A; #chains in the Genus database with same CATH topology 1XU8 A; 1DB2 A; 3NE4 A; 2XN6 A; 2B4X I; 1DZG I; 1OO8 A; 4AU2 A; 1K9O I; 4ZK0 A; 4G8O A; 1AZX I; 3EVJ I; 3LE2 A; 4C49 A; 2ARQ A; 1ATU A; 1EZX A; 1BY7 A; 2WXY C; 2BEH I; 2ZV6 A; 4AU3 A; 1XQG A; 4AFX A; 2B4X L; 1MTP A; 3T1P A; 1JTI A; 2PEF A; 3ZHA A; 4IC0 A; 1R1L I; 4G8R A; 4EB1 I; 1C5G A; 2BEH L; 1XQJ A; 2XN3 A; 1M93 B; 4C41 A; 3DRU A; 2ACH A; 2D26 A; 1DVN A; 2H4Q A; 2OL2 A; 1JMJ A; 1TB6 I; 8API A; 4DY7 C; 1T1F A; 4P0O A; 3NDD A; 2XN5 A; 3CVM A; 3PZF A; 1ATH A; 4AJU A; 1B3K A; 2DUT A; 5BRR I; 1OPH A; 1E05 I; 2WXZ A; 1KCT A; 2XN7 A; 3DRM A; 4RSQ A; 4BB2 A; 1OVA A; 1E03 I; 1DZG L; 1C8O A; 1AS4 A; 7API A; 5HGC A; 1IZ2 A; 2V95 A; 3F02 A; 3R4L A; 2RIV A; 3H5C A; 1SEK A; 2R9Y A; 1LJ5 A; 2H4P A; 4R9I A; 4YIA A; 4AQH A; 1JRR A; 3UT3 A; 1OC0 A; 1UHG A; 3Q03 A; 2RIW A; 2OAY A; 1OYH I; 2QUG A; 1IMV A; 2WY1 A; 4EB1 L; 5INW A; 4GA7 A; 3VVJ A; 2HI9 A; 3DLW A; 1SNG A; 2VDX A; 1ATT A; 4DY0 A; 3KCG I; 4PYW A; 4AU3 B; 9API A; 1OYH L; 5CDZ A; 1PSI A; 3CWM A; 2WXW A; 1F0C A; 3Q02 A; 1QMN A; 3CWL A; 2CEO A; 2ZNH A; 1DZH I; 2GD4 C; 2PEE A; 3CAA A; 1JVQ I; 1HP7 A; 2HIJ I; 3F5N A; 3LW2 A; 9PAI A; 3B9F I; 2ANT I; 5EI0 A; 4IF8 A; 4ROB A; 1QMB A; 3OZQ A; 2ARR A; 1JJO C; 2WY0 C; 4P0F A; 1BR8 I; 3DY0 A; 1DZH L; 4ZK3 A; 2HIJ L; 4ROA A; 4Y3K A; 5IO1 A; 5CDX A; 2VH4 A; 4Y40 A; 1D5S A; 1SR5 A; 1NQ9 I; 2WXX A; 5CE0 A; 3F1S A; 1ANT I; 3EOX A; 4AJT A; 1HLE A; 1YXA A; 1OVA B; 3FGQ A; 1E04 I; 3STO A; 1LQ8 A; 1QLP A; 4CAA A; 4AU4 A; 4DTE A; 1DVM A; 1LK6 I; 2WXZ C; 3NDA A; 3NDF A; 4X30 A; 1OVA C; 2B5T I; 3PB1 I; 4KDS A; 2VDY A; 2H4R A; 1A7C A; 1JMO A; 5C98 A; 4RO9 A; 1WZ9 A; #chains in the Genus database with same CATH homology 1XU8 A; 1DB2 A; 3NE4 A; 2XN6 A; 2B4X I; 1DZG I; 1OO8 A; 4AU2 A; 1K9O I; 4ZK0 A; 4G8O A; 1AZX I; 3EVJ I; 3LE2 A; 4C49 A; 2ARQ A; 1ATU A; 1EZX A; 1BY7 A; 2WXY C; 2BEH I; 2ZV6 A; 4AU3 A; 1XQG A; 4AFX A; 2B4X L; 1MTP A; 3T1P A; 1JTI A; 2PEF A; 3ZHA A; 4IC0 A; 1R1L I; 4G8R A; 4EB1 I; 1C5G A; 2BEH L; 1XQJ A; 2XN3 A; 1M93 B; 4C41 A; 3DRU A; 2ACH A; 2D26 A; 1DVN A; 2H4Q A; 2OL2 A; 1JMJ A; 1TB6 I; 8API A; 4DY7 C; 1T1F A; 4P0O A; 3NDD A; 2XN5 A; 3CVM A; 3PZF A; 1ATH A; 4AJU A; 1B3K A; 2DUT A; 5BRR I; 1OPH A; 1E05 I; 2WXZ A; 1KCT A; 2XN7 A; 3DRM A; 4RSQ A; 4BB2 A; 1OVA A; 1E03 I; 1DZG L; 1C8O A; 1AS4 A; 7API A; 5HGC A; 1IZ2 A; 2V95 A; 3F02 A; 3R4L A; 2RIV A; 3H5C A; 1SEK A; 2R9Y A; 1LJ5 A; 2H4P A; 4R9I A; 4YIA A; 4AQH A; 1JRR A; 3UT3 A; 1OC0 A; 1UHG A; 3Q03 A; 2RIW A; 2OAY A; 1OYH I; 2QUG A; 1IMV A; 2WY1 A; 4EB1 L; 5INW A; 4GA7 A; 3VVJ A; 2HI9 A; 3DLW A; 1SNG A; 2VDX A; 1ATT A; 4DY0 A; 3KCG I; 4PYW A; 4AU3 B; 9API A; 1OYH L; 5CDZ A; 1PSI A; 3CWM A; 2WXW A; 1F0C A; 3Q02 A; 1QMN A; 3CWL A; 2CEO A; 2ZNH A; 1DZH I; 2GD4 C; 2PEE A; 3CAA A; 1JVQ I; 1HP7 A; 2HIJ I; 3F5N A; 3LW2 A; 9PAI A; 3B9F I; 2ANT I; 5EI0 A; 4IF8 A; 4ROB A; 1QMB A; 3OZQ A; 2ARR A; 1JJO C; 2WY0 C; 4P0F A; 1BR8 I; 3DY0 A; 1DZH L; 4ZK3 A; 2HIJ L; 4ROA A; 4Y3K A; 5IO1 A; 5CDX A; 2VH4 A; 4Y40 A; 1D5S A; 1SR5 A; 1NQ9 I; 2WXX A; 5CE0 A; 3F1S A; 1ANT I; 3EOX A; 4AJT A; 1HLE A; 1YXA A; 1OVA B; 3FGQ A; 1E04 I; 3STO A; 1LQ8 A; 1QLP A; 4CAA A; 4AU4 A; 4DTE A; 1DVM A; 1LK6 I; 2WXZ C; 3NDA A; 3NDF A; 4X30 A; 1OVA C; 2B5T I; 3PB1 I; 4KDS A; 2VDY A; 2H4R A; 1A7C A; 1JMO A; 5C98 A; 4RO9 A; 1WZ9 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
