4P4HA

Caught-in-action signaling complex of rig-i 2card domain and mavs card domain
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
188
structure length
188
Chain Sequence
MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMAAATLFLKFLLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Probable ATP-dependent RNA helicase DDX58
publication title Molecular Imprinting as a Signal-Activation Mechanism of the Viral RNA Sensor RIG-I.
pubmed doi rcsb
source organism Homo sapiens
total genus 61
structure length 188
sequence length 188
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2014-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16739 CARD_2 Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4p4hA01
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4p4hA02
4A2WA 4N1KA 2N80A 4IZ5E 3YGSC 2DBHA 3YGSP 2BBRA 2M5VA 4N1LA 2VGQA 2O71A 4M9SA 3MOPK 3CRDA 2LS7A 4LWDA 1UCPA 2NZ7A 2MS7A 3J63A 4EWIA 1E3YA 2F1SA 1N3KA 4P4HA 4O6XA 4O9LA 1CY5A 1WXPA 4RHWA 4F44A 4I16A 2MN4A 2P1HA 2N7ZA 2DBFA 3MOPA 2N1FA 1PN5A 2MPCA 2D96A 3CL3A 2LWDA 4E9MA 2OF5A 1YGOA 4JUPA 2IB1A 1FADA 1D2ZA 2G7RA 3EZQA 4M9ZA 3QF2A 4IZAB 4P4HI 2OF5H 1DDFA 2YVIA 4DWNA 2GF5A 2LWEA 4O9FA 2MS8A 4FH0A 1NGRA 4QOBA 2MB9A 2N97A 2DO9A 2KM6A 4JQWA 2KN6A 1WMGA 2L9MA 4F42A 3T6PA 2B1WA 1A1ZA 2BBZA 2L6AA 2N00A 1Z6TA 4N1JA 1DGNA 2HM2Q 4NQKA 4IZ7B 3J6JA 4D8OA 2A9IA 3LQRA 2YGSA 3EZQB 1WH4A 2N83A 4RHWE 4UZ0A 2YQFA 2NSNA 3MOPG 1ICHA 3KATA 2DBGA 2NAQA 1C15A 1A1WA 4A2QA 2YU0A 4M9XA 4ZBWA 2A5YB 1CWWA 3LQQA 2DBDA 1E41A 4O7QA 1D2ZB
chains in the Genus database with same CATH superfamily
4A2WA 4N1KA 2N80A 4IZ5E 3YGSC 2DBHA 3YGSP 2BBRA 2M5VA 4N1LA 2VGQA 2O71A 4M9SA 3MOPK 3CRDA 2LS7A 4LWDA 1UCPA 2NZ7A 2MS7A 3J63A 4EWIA 1E3YA 2F1SA 1N3KA 4P4HA 4O6XA 4O9LA 1CY5A 1WXPA 4RHWA 4F44A 4I16A 2MN4A 2P1HA 2N7ZA 2DBFA 3MOPA 2N1FA 1PN5A 2MPCA 2D96A 3CL3A 2LWDA 4E9MA 2OF5A 1YGOA 4JUPA 2IB1A 1FADA 1D2ZA 2G7RA 3EZQA 4M9ZA 3QF2A 4IZAB 4P4HI 2OF5H 1DDFA 2YVIA 4DWNA 2GF5A 2LWEA 4O9FA 2MS8A 4FH0A 1NGRA 4QOBA 2MB9A 2N97A 2DO9A 2KM6A 4JQWA 2KN6A 1WMGA 2L9MA 4F42A 3T6PA 2B1WA 1A1ZA 2BBZA 2L6AA 2N00A 1Z6TA 4N1JA 1DGNA 2HM2Q 2XV9A 4NQKA 4IZ7B 3J6JA 4D8OA 2A9IA 3LQRA 2YGSA 3EZQB 1WH4A 2N83A 4RHWE 4UZ0A 2YQFA 2NSNA 3MOPG 1ICHA 3KATA 2DBGA 2NAQA 1C15A 1A1WA 2MJMA 4A2QA 2YU0A 4M9XA 4ZBWA 2A5YB 1CWWA 3LQQA 2DBDA 1E41A 4O7QA 1D2ZB
chains in the Genus database with same CATH topology
4A2WA 4N1KA 2N80A 4IZ5E 3YGSC 2DBHA 3YGSP 2BBRA 2M5VA 4N1LA 2VGQA 2O71A 4M9SA 3MOPK 3CRDA 2LS7A 4LWDA 1UCPA 2NZ7A 2MS7A 3J63A 4EWIA 1E3YA 2F1SA 1N3KA 4P4HA 4O6XA 4O9LA 1CY5A 1WXPA 4RHWA 4F44A 4I16A 2MN4A 2P1HA 2N7ZA 2DBFA 3MOPA 2N1FA 1PN5A 2MPCA 2D96A 3CL3A 2LWDA 4E9MA 2OF5A 1YGOA 4JUPA 2IB1A 1FADA 1D2ZA 2G7RA 3EZQA 4M9ZA 3QF2A 4IZAB 4P4HI 2OF5H 1DDFA 2YVIA 4DWNA 2GF5A 2LWEA 4O9FA 2MS8A 4FH0A 1NGRA 4QOBA 2MB9A 2N97A 2DO9A 2KM6A 4JQWA 2KN6A 1WMGA 2L9MA 4F42A 3T6PA 2B1WA 1A1ZA 2BBZA 2L6AA 2N00A 1Z6TA 4N1JA 1DGNA 2HM2Q 2XV9A 4NQKA 4IZ7B 3J6JA 4D8OA 2A9IA 3LQRA 2YGSA 3EZQB 1WH4A 2N83A 4RHWE 4UZ0A 2YQFA 2NSNA 3MOPG 1ICHA 3KATA 2DBGA 2NAQA 1C15A 1A1WA 2MJMA 4A2QA 2YU0A 4M9XA 4ZBWA 2A5YB 1CWWA 3LQQA 2DBDA 1E41A 4O7QA 1D2ZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A2W A;  4N1K A;  2N80 A;  4IZ5 E;  3YGS C;  2DBH A;  3YGS P;  2BBR A;  2M5V A;  4N1L A;  2VGQ A;  2O71 A;  4M9S A;  3MOP K;  3CRD A;  2LS7 A;  4LWD A;  1UCP A;  2NZ7 A;  2MS7 A;  3J63 A;  4EWI A;  1E3Y A;  2F1S A;  1N3K A;  4P4H A;  4O6X A;  4O9L A;  1CY5 A;  1WXP A;  4RHW A;  4F44 A;  4I16 A;  2MN4 A;  2P1H A;  2N7Z A;  2DBF A;  3MOP A;  2N1F A;  1PN5 A;  2MPC A;  2D96 A;  3CL3 A;  2LWD A;  4E9M A;  2OF5 A;  1YGO A;  4JUP A;  2IB1 A;  1FAD A;  1D2Z A;  2G7R A;  3EZQ A;  4M9Z A;  3QF2 A;  4IZA B;  4P4H I;  2OF5 H;  1DDF A;  2YVI A;  4DWN A;  2GF5 A;  2LWE A;  4O9F A;  2MS8 A;  4FH0 A;  1NGR A;  4QOB A;  2MB9 A;  2N97 A;  2DO9 A;  2KM6 A;  4JQW A;  2KN6 A;  1WMG A;  2L9M A;  4F42 A;  3T6P A;  2B1W A;  1A1Z A;  2BBZ A;  2L6A A;  2N00 A;  1Z6T A;  4N1J A;  1DGN A;  2HM2 Q;  4NQK A;  4IZ7 B;  3J6J A;  4D8O A;  2A9I A;  3LQR A;  2YGS A;  3EZQ B;  1WH4 A;  2N83 A;  4RHW E;  4UZ0 A;  2YQF A;  2NSN A;  3MOP G;  1ICH A;  3KAT A;  2DBG A;  2NAQ A;  1C15 A;  1A1W A;  4A2Q A;  2YU0 A;  4M9X A;  4ZBW A;  2A5Y B;  1CWW A;  3LQQ A;  2DBD A;  1E41 A;  4O7Q A;  1D2Z B; 
#chains in the Genus database with same CATH topology
 4A2W A;  4N1K A;  2N80 A;  4IZ5 E;  3YGS C;  2DBH A;  3YGS P;  2BBR A;  2M5V A;  4N1L A;  2VGQ A;  2O71 A;  4M9S A;  3MOP K;  3CRD A;  2LS7 A;  4LWD A;  1UCP A;  2NZ7 A;  2MS7 A;  3J63 A;  4EWI A;  1E3Y A;  2F1S A;  1N3K A;  4P4H A;  4O6X A;  4O9L A;  1CY5 A;  1WXP A;  4RHW A;  4F44 A;  4I16 A;  2MN4 A;  2P1H A;  2N7Z A;  2DBF A;  3MOP A;  2N1F A;  1PN5 A;  2MPC A;  2D96 A;  3CL3 A;  2LWD A;  4E9M A;  2OF5 A;  1YGO A;  4JUP A;  2IB1 A;  1FAD A;  1D2Z A;  2G7R A;  3EZQ A;  4M9Z A;  3QF2 A;  4IZA B;  4P4H I;  2OF5 H;  1DDF A;  2YVI A;  4DWN A;  2GF5 A;  2LWE A;  4O9F A;  2MS8 A;  4FH0 A;  1NGR A;  4QOB A;  2MB9 A;  2N97 A;  2DO9 A;  2KM6 A;  4JQW A;  2KN6 A;  1WMG A;  2L9M A;  4F42 A;  3T6P A;  2B1W A;  1A1Z A;  2BBZ A;  2L6A A;  2N00 A;  1Z6T A;  4N1J A;  1DGN A;  2HM2 Q;  2XV9 A;  4NQK A;  4IZ7 B;  3J6J A;  4D8O A;  2A9I A;  3LQR A;  2YGS A;  3EZQ B;  1WH4 A;  2N83 A;  4RHW E;  4UZ0 A;  2YQF A;  2NSN A;  3MOP G;  1ICH A;  3KAT A;  2DBG A;  2NAQ A;  1C15 A;  1A1W A;  2MJM A;  4A2Q A;  2YU0 A;  4M9X A;  4ZBW A;  2A5Y B;  1CWW A;  3LQQ A;  2DBD A;  1E41 A;  4O7Q A;  1D2Z B; 
#chains in the Genus database with same CATH homology
 4A2W A;  4N1K A;  2N80 A;  4IZ5 E;  3YGS C;  2DBH A;  3YGS P;  2BBR A;  2M5V A;  4N1L A;  2VGQ A;  2O71 A;  4M9S A;  3MOP K;  3CRD A;  2LS7 A;  4LWD A;  1UCP A;  2NZ7 A;  2MS7 A;  3J63 A;  4EWI A;  1E3Y A;  2F1S A;  1N3K A;  4P4H A;  4O6X A;  4O9L A;  1CY5 A;  1WXP A;  4RHW A;  4F44 A;  4I16 A;  2MN4 A;  2P1H A;  2N7Z A;  2DBF A;  3MOP A;  2N1F A;  1PN5 A;  2MPC A;  2D96 A;  3CL3 A;  2LWD A;  4E9M A;  2OF5 A;  1YGO A;  4JUP A;  2IB1 A;  1FAD A;  1D2Z A;  2G7R A;  3EZQ A;  4M9Z A;  3QF2 A;  4IZA B;  4P4H I;  2OF5 H;  1DDF A;  2YVI A;  4DWN A;  2GF5 A;  2LWE A;  4O9F A;  2MS8 A;  4FH0 A;  1NGR A;  4QOB A;  2MB9 A;  2N97 A;  2DO9 A;  2KM6 A;  4JQW A;  2KN6 A;  1WMG A;  2L9M A;  4F42 A;  3T6P A;  2B1W A;  1A1Z A;  2BBZ A;  2L6A A;  2N00 A;  1Z6T A;  4N1J A;  1DGN A;  2HM2 Q;  2XV9 A;  4NQK A;  4IZ7 B;  3J6J A;  4D8O A;  2A9I A;  3LQR A;  2YGS A;  3EZQ B;  1WH4 A;  2N83 A;  4RHW E;  4UZ0 A;  2YQF A;  2NSN A;  3MOP G;  1ICH A;  3KAT A;  2DBG A;  2NAQ A;  1C15 A;  1A1W A;  2MJM A;  4A2Q A;  2YU0 A;  4M9X A;  4ZBW A;  2A5Y B;  1CWW A;  3LQQ A;  2DBD A;  1E41 A;  4O7Q A;  1D2Z B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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