4PHZC

Crystal structure of particulate methane monooxygenase from methylocystis sp. atcc 49242 (rockwell)
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
241
structure length
214
Chain Sequence
ESVVDLRGMWIGLVLLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVTPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGTWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNVGWMALGVFGVVLQILMRIHALVGKEGVKLLTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords unknown peptide
publication title Effects of zinc on particulate methane monooxygenase activity and structure.
pubmed doi rcsb
total genus 76
structure length 214
sequence length 241
chains with identical sequence G, K
ec nomenclature ec 1.14.18.3: Methane monooxygenase (particulate).
pdb deposition date 2014-05-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1050.50 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 Particulate methane monooxygenase subunit c2. Chain: C 4phzC00
4PI0C 3RFRC 3RGBC 1YEWC 4PHZC 4PI2C 3CHXC
chains in the Genus database with same CATH superfamily
2O3EA 4GCIA 3KM6A 4YQMA 3CRUA 4LMWA 3VK9A 4F03A 1GSSA 1SVLA 3VPTA 4ZBBA 5A4WA 5JCUA 3KJYA 3WYWA 3C8EA 1AQXA 6GSVA 2YV9A 5D9TA 2F3MA 2VCXA 1K0DA 3VI5A 2C3TA 2JL4A 2WS2A 3ERFA 5ECNB 3HMJG 2PVQA 3LYPA 2WDUA 3GTUB 1HQOA 4K0NA 2VD1A 1EOGA 4MP4A 2AB6A 5A34A 1YVLA 2O5VA 4GF0A 4PNFA 3IBHA 1GTBA 1XWKA 1LBKA 5DQSA 4ZB6A 4QMKA 2HRKB 2H1LA 1YQ1A 2PBJA 5EL8A 1PKWA 5ECRB 1RK4A 4NHZA 4PQHA 1U3IA 4YQUA 4IGJA 1B4PA 5LD0A 3VLNA 5LCZA 5DALB 1GWCA 2FNOA 3P8WA 1K0MA 3IR4A 1V2AA 3VPQA 3I69A 2EFCA 4MF5A 4G9HA 2WVXB 4GSSA 1YDKA 3PPUA 1A0FA 5F07A 2C80A 3GTUA 5D9VA 2GDRA 1K3OA 1PX7A 4KE3A 4G01A 1IYIA 2GSSA 5F06A 1VF1A 2FHEA 5A5KA 2HRKA 4FXYP 4DEJA 4ACSA 4WR4A 4IBPA 5A1NA 3ZMLA 3BBYA 4OMVA 1PGTA 5DJMA 3QAGA 1GSEA 4IJIA 2WW3A 4ISDA 4IW9A 2CVDA 4RI6A 1K3YA 5GZZB 1GSYA 1N25A 2R3XA 3PGTA 4BVYA 6GSTA 1MD3A 2LJRA 2VCZA 12GSA 1JLWA 5J4UA 1SVMA 4ZXGA 1GNWA 4JEDA 4KF9A 3LXTA 3UVHA 1B8XA 4AGSA 3Q18A 1Q4JA 4USSA 4G0IA 4G19A 2WVXA 1EEMA 1GUHA 3CRTA 3CSHA 4GSNA 3TOUA 2CAIA 1K0CA 2C4JA 1MD4A 2R6KA 1AW9A 2VKZG 1OYJA 1BG5A 4PUAA 1AQVA 1GNEA 3MDKA 3QR6A 5HFKA 3KMOA 1Y1UA 1EV4A 3RGBC 1G6YA 1GULA 2ON5A 4HOJA 3MAKA 3GSTA 4ZB9A 2VCQA 4K0GA 5ECSA 3QAVA 3NIVA 4O92A 1G6WA 1YJ6A 2R5GA 5A4VA 3DGQA 1UA5A 4HJ2A 3GURA 2WB9A 3IK7A 5GSTA 3D0ZA 1K0AA 3I6AA 5FT3A 1GTAA 1M99A 1K3LA 3O76A 4MDCA 5KEJA 1IYHA 4ZBDA 2WW2A 3GH6A 3UAPA 2YV7A 1JZRA 5J5NA 1B48A 2C8UA 1ZL9A 4OFNA 5DDLA 1GLPA 2X64A 4GLTA 1HNCA 6GSSA 4EDYA 2A2SA 5J47A 9GSSA 3W8SA 1Y6EA 4L8EA 1K0NA 1PD21 1ZGNA 4BL7B 5AGYA 3TU3B 7GSSA 4YH2A 1YEWC 5BMUB 5D73A 2IMKA 4N0VA 3UBLA 2PERA 4ECJA 1DUGA 4IELA 4ECBA 1VF2A 3GUSA 3M8NA 5JCWA 5DAKB 1U87A 3L0HA 4NAXA 2CA8A 4ECIA 4ZB8A 1XW6A 1HNBA 4JZQA 4AKHA 4MPFA 4OFTA 3WD6A 5ELAA 3LG6A 22GSA 4ID0A 4O7HA 2A2RA 18GSA 10GSA 3GX0A 4KX4A 4W66A 2VD0A 4TOPA 5AIXA 1PX6A 5A5HB 2GLRA 1PL1A 2OADA 3TOTA 2GTUA 1TDIA 3UARA 4IS0A 5ECHB 4AKGA 2CZ3A 2HRAA 4KGIA 3IE3A 1TXUA 1KBNA 4F0CA 1USBA 4KSMA 4RI7A 3ZFLA 3LJRA 3EINA 3LFLA 3LQ7A 1OE8A 5BMUA 2WZSA 1TU8A 2WW0A 3LXZA 3CSIA 5DALA 5J40A 5J4YA 1BYEA 2DC5A 2EFEA 3R3EA 1JLVA 3CSJA 1GSUA 1K0OA 6GSUA 5B7CA 1FHEA 4PI2C 5ECIB 4G0KA 4EXJA 5ECQB 1GSQA 5DAKA 1PL2A 1R5AA 2WRTA 4AI6A 2AHEA 3FY7A 1FW1A 1I1IP 4AKIA 4PQIA 2ON7A 2V6KA 2C3NA 3F63A 5J41A 1S4BP 3VI7A 2WVZA 1NHYA 4MZWA 1ML6A 1VF3A 1GSDA 2J9HA 2OT3A 1EOHA 1PA3A 1YY7A 3P90A 3FR9A 2CAQA 6GSXA 4CHSA 1XW5A 2WW1A 4GDFA 1TW9A 3F6DA 3HKRA 1BF5A 2GSTA 1GTIA 5EVOA 1MTCA 1AQWA 2EFDA 2O36A 3U6VA 1LJRA 2VCVA 4IKHA 5FHIA 4EC0A 4Q5RA 4JBBA 2NTOA 4ZBAA 4PI0C 4KDYA 4HZ4A 3SWLA 1PMTA 1K0BA 4KDUA 1U88A 3VURA 2GSRA 2HSNB 2N5FA 4KH7A 1C72A 1GSFA 1GLQA 2UV8G 4NHWA 4E68A 3CWGA 4HI7A 4OFMA 3ZFBA 3QAWA 3ERGA 2D2ZA 4IQAA 4PNGA 3M0FA 5DCGA 5ECLB 3ISOA 2AAWA 5AN1A 4L5LA 3DD3A 1M0UA 20GSA 3Q19A 4Q5QA 3LSZA 1TU7A 3H1NA 1F3BA 5AIVA 4GTUA 4BVXB 6GSYA 2CZ2A 1M9AA 2PMTA 5A4UA 1BAYA 5J4VA 3F6FA 4PX1A 5ECOB 2OA7A 4PURA 1BX9A 2WVYA 4MPGA 3IK9A 5A1NB 4PHZC 5G5FA 4IVFA 5D9WA 3CHXC 3CBUA 1N2AA 1VF4A 19GSA 5EY6A 3Q74A 3M1GA 4GSTA 4IQ1A 4BVYB 3N9JA 3HJOA 1E6BA 2HSNA 2WJUA 1YKCA 1M9BA 2HNLA 5F05A 4I97A 4WR5A 4ZB7A 16GSA 4MK3A 5AISA 5ECPB 5FWGA 2F8FA 4HZ2A 3N5OA 5DJLA 8GSSA 1F3AA 3LYKA 2R4VA 1OKTA 5D9XA 17GSA 3HJMA 2HSMB 3FR6A 4BVXA 13GSA 5ECKB 4BL7A 1V40A 4E8HA 4KAEA 14GSA 4KDXA 3G7JA 4ECCA 2VO4A 5IQYA 1XWGA 3KXOA 5F8BA 4G10A 2UZ8A 1G7OA 3O3TA 5F0GA 3G7IA 1F2EA 4LMVA 4F0BA 1SVOA 3TGZA 3VWXA 4G0LA 3IC8A 3FRCA 4E8EA 1GTUA 1PN9A 3R2QA 5ECMB 1OE7A 4Q5NA 3KTLA 2VCTA 5ELGA 2IMIA 3EE2A 6GSWA 3AY8A 2OACA 4YAVA 1EV9A 4L5OA 4YQVA 4QQ7A 2HQTA 1GUMA 4EDZA 4N3ZA 5A34B 3GSSA 4PTSA 1HNAA 1BG1A 5G5EA 3RBTA 1PKZA 3M3MA 2C3QA 5A5HA 4J2FA 1Z9HA 11GSA 4PXOA 2PGTA 4MF7A 2GSQA 4PGTA 4YAPA 4MF6A 4FQUA 3FYGA 3UBKA 2HSMA 3RFRC 3FR3A 1AXDA 5GSSA 2DSAA 4EE0A 3PR8A 2IL3A 1GUKA 2EFHA 2YCDA 3KMNA 2VCWA 3ZMKA 4AKXB 4Q5FA
chains in the Genus database with same CATH topology
4PI0C 3RFRC 3RGBC 1YEWC 4PHZC 4PI2C 3CHXC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PI0 C;  3RFR C;  3RGB C;  1YEW C;  4PHZ C;  4PI2 C;  3CHX C; 
#chains in the Genus database with same CATH topology
 2O3E A;  4GCI A;  3KM6 A;  4YQM A;  3CRU A;  4LMW A;  3VK9 A;  4F03 A;  1GSS A;  1SVL A;  3VPT A;  4ZBB A;  5A4W A;  5JCU A;  3KJY A;  3WYW A;  3C8E A;  1AQX A;  6GSV A;  2YV9 A;  5D9T A;  2F3M A;  2VCX A;  1K0D A;  3VI5 A;  2C3T A;  2JL4 A;  2WS2 A;  3ERF A;  5ECN B;  3HMJ G;  2PVQ A;  3LYP A;  2WDU A;  3GTU B;  1HQO A;  4K0N A;  2VD1 A;  1EOG A;  4MP4 A;  2AB6 A;  5A34 A;  1YVL A;  2O5V A;  4GF0 A;  4PNF A;  3IBH A;  1GTB A;  1XWK A;  1LBK A;  5DQS A;  4ZB6 A;  4QMK A;  2HRK B;  2H1L A;  1YQ1 A;  2PBJ A;  5EL8 A;  1PKW A;  5ECR B;  1RK4 A;  4NHZ A;  4PQH A;  1U3I A;  4YQU A;  4IGJ A;  1B4P A;  5LD0 A;  3VLN A;  5LCZ A;  5DAL B;  1GWC A;  2FNO A;  3P8W A;  1K0M A;  3IR4 A;  1V2A A;  3VPQ A;  3I69 A;  2EFC A;  4MF5 A;  4G9H A;  2WVX B;  4GSS A;  1YDK A;  3PPU A;  1A0F A;  5F07 A;  2C80 A;  3GTU A;  5D9V A;  2GDR A;  1K3O A;  1PX7 A;  4KE3 A;  4G01 A;  1IYI A;  2GSS A;  5F06 A;  1VF1 A;  2FHE A;  5A5K A;  2HRK A;  4FXY P;  4DEJ A;  4ACS A;  4WR4 A;  4IBP A;  5A1N A;  3ZML A;  3BBY A;  4OMV A;  1PGT A;  5DJM A;  3QAG A;  1GSE A;  4IJI A;  2WW3 A;  4ISD A;  4IW9 A;  2CVD A;  4RI6 A;  1K3Y A;  5GZZ B;  1GSY A;  1N25 A;  2R3X A;  3PGT A;  4BVY A;  6GST A;  1MD3 A;  2LJR A;  2VCZ A;  12GS A;  1JLW A;  5J4U A;  1SVM A;  4ZXG A;  1GNW A;  4JED A;  4KF9 A;  3LXT A;  3UVH A;  1B8X A;  4AGS A;  3Q18 A;  1Q4J A;  4USS A;  4G0I A;  4G19 A;  2WVX A;  1EEM A;  1GUH A;  3CRT A;  3CSH A;  4GSN A;  3TOU A;  2CAI A;  1K0C A;  2C4J A;  1MD4 A;  2R6K A;  1AW9 A;  2VKZ G;  1OYJ A;  1BG5 A;  4PUA A;  1AQV A;  1GNE A;  3MDK A;  3QR6 A;  5HFK A;  3KMO A;  1Y1U A;  1EV4 A;  3RGB C;  1G6Y A;  1GUL A;  2ON5 A;  4HOJ A;  3MAK A;  3GST A;  4ZB9 A;  2VCQ A;  4K0G A;  5ECS A;  3QAV A;  3NIV A;  4O92 A;  1G6W A;  1YJ6 A;  2R5G A;  5A4V A;  3DGQ A;  1UA5 A;  4HJ2 A;  3GUR A;  2WB9 A;  3IK7 A;  5GST A;  3D0Z A;  1K0A A;  3I6A A;  5FT3 A;  1GTA A;  1M99 A;  1K3L A;  3O76 A;  4MDC A;  5KEJ A;  1IYH A;  4ZBD A;  2WW2 A;  3GH6 A;  3UAP A;  2YV7 A;  1JZR A;  5J5N A;  1B48 A;  2C8U A;  1ZL9 A;  4OFN A;  5DDL A;  1GLP A;  2X64 A;  4GLT A;  1HNC A;  6GSS A;  4EDY A;  2A2S A;  5J47 A;  9GSS A;  3W8S A;  1Y6E A;  4L8E A;  1K0N A;  1PD2 1;  1ZGN A;  4BL7 B;  5AGY A;  3TU3 B;  7GSS A;  4YH2 A;  1YEW C;  5BMU B;  5D73 A;  2IMK A;  4N0V A;  3UBL A;  2PER A;  4ECJ A;  1DUG A;  4IEL A;  4ECB A;  1VF2 A;  3GUS A;  3M8N A;  5JCW A;  5DAK B;  1U87 A;  3L0H A;  4NAX A;  2CA8 A;  4ECI A;  4ZB8 A;  1XW6 A;  1HNB A;  4JZQ A;  4AKH A;  4MPF A;  4OFT A;  3WD6 A;  5ELA A;  3LG6 A;  22GS A;  4ID0 A;  4O7H A;  2A2R A;  18GS A;  10GS A;  3GX0 A;  4KX4 A;  4W66 A;  2VD0 A;  4TOP A;  5AIX A;  1PX6 A;  5A5H B;  2GLR A;  1PL1 A;  2OAD A;  3TOT A;  2GTU A;  1TDI A;  3UAR A;  4IS0 A;  5ECH B;  4AKG A;  2CZ3 A;  2HRA A;  4KGI A;  3IE3 A;  1TXU A;  1KBN A;  4F0C A;  1USB A;  4KSM A;  4RI7 A;  3ZFL A;  3LJR A;  3EIN A;  3LFL A;  3LQ7 A;  1OE8 A;  5BMU A;  2WZS A;  1TU8 A;  2WW0 A;  3LXZ A;  3CSI A;  5DAL A;  5J40 A;  5J4Y A;  1BYE A;  2DC5 A;  2EFE A;  3R3E A;  1JLV A;  3CSJ A;  1GSU A;  1K0O A;  6GSU A;  5B7C A;  1FHE A;  4PI2 C;  5ECI B;  4G0K A;  4EXJ A;  5ECQ B;  1GSQ A;  5DAK A;  1PL2 A;  1R5A A;  2WRT A;  4AI6 A;  2AHE A;  3FY7 A;  1FW1 A;  1I1I P;  4AKI A;  4PQI A;  2ON7 A;  2V6K A;  2C3N A;  3F63 A;  5J41 A;  1S4B P;  3VI7 A;  2WVZ A;  1NHY A;  4MZW A;  1ML6 A;  1VF3 A;  1GSD A;  2J9H A;  2OT3 A;  1EOH A;  1PA3 A;  1YY7 A;  3P90 A;  3FR9 A;  2CAQ A;  6GSX A;  4CHS A;  1XW5 A;  2WW1 A;  4GDF A;  1TW9 A;  3F6D A;  3HKR A;  1BF5 A;  2GST A;  1GTI A;  5EVO A;  1MTC A;  1AQW A;  2EFD A;  2O36 A;  3U6V A;  1LJR A;  2VCV A;  4IKH A;  5FHI A;  4EC0 A;  4Q5R A;  4JBB A;  2NTO A;  4ZBA A;  4PI0 C;  4KDY A;  4HZ4 A;  3SWL A;  1PMT A;  1K0B A;  4KDU A;  1U88 A;  3VUR A;  2GSR A;  2HSN B;  2N5F A;  4KH7 A;  1C72 A;  1GSF A;  1GLQ A;  2UV8 G;  4NHW A;  4E68 A;  3CWG A;  4HI7 A;  4OFM A;  3ZFB A;  3QAW A;  3ERG A;  2D2Z A;  4IQA A;  4PNG A;  3M0F A;  5DCG A;  5ECL B;  3ISO A;  2AAW A;  5AN1 A;  4L5L A;  3DD3 A;  1M0U A;  20GS A;  3Q19 A;  4Q5Q A;  3LSZ A;  1TU7 A;  3H1N A;  1F3B A;  5AIV A;  4GTU A;  4BVX B;  6GSY A;  2CZ2 A;  1M9A A;  2PMT A;  5A4U A;  1BAY A;  5J4V A;  3F6F A;  4PX1 A;  5ECO B;  2OA7 A;  4PUR A;  1BX9 A;  2WVY A;  4MPG A;  3IK9 A;  5A1N B;  4PHZ C;  5G5F A;  4IVF A;  5D9W A;  3CHX C;  3CBU A;  1N2A A;  1VF4 A;  19GS A;  5EY6 A;  3Q74 A;  3M1G A;  4GST A;  4IQ1 A;  4BVY B;  3N9J A;  3HJO A;  1E6B A;  2HSN A;  2WJU A;  1YKC A;  1M9B A;  2HNL A;  5F05 A;  4I97 A;  4WR5 A;  4ZB7 A;  16GS A;  4MK3 A;  5AIS A;  5ECP B;  5FWG A;  2F8F A;  4HZ2 A;  3N5O A;  5DJL A;  8GSS A;  1F3A A;  3LYK A;  2R4V A;  1OKT A;  5D9X A;  17GS A;  3HJM A;  2HSM B;  3FR6 A;  4BVX A;  13GS A;  5ECK B;  4BL7 A;  1V40 A;  4E8H A;  4KAE A;  14GS A;  4KDX A;  3G7J A;  4ECC A;  2VO4 A;  5IQY A;  1XWG A;  3KXO A;  5F8B A;  4G10 A;  2UZ8 A;  1G7O A;  3O3T A;  5F0G A;  3G7I A;  1F2E A;  4LMV A;  4F0B A;  1SVO A;  3TGZ A;  3VWX A;  4G0L A;  3IC8 A;  3FRC A;  4E8E A;  1GTU A;  1PN9 A;  3R2Q A;  5ECM B;  1OE7 A;  4Q5N A;  3KTL A;  2VCT A;  5ELG A;  2IMI A;  3EE2 A;  6GSW A;  3AY8 A;  2OAC A;  4YAV A;  1EV9 A;  4L5O A;  4YQV A;  4QQ7 A;  2HQT A;  1GUM A;  4EDZ A;  4N3Z A;  5A34 B;  3GSS A;  4PTS A;  1HNA A;  1BG1 A;  5G5E A;  3RBT A;  1PKZ A;  3M3M A;  2C3Q A;  5A5H A;  4J2F A;  1Z9H A;  11GS A;  4PXO A;  2PGT A;  4MF7 A;  2GSQ A;  4PGT A;  4YAP A;  4MF6 A;  4FQU A;  3FYG A;  3UBK A;  2HSM A;  3RFR C;  3FR3 A;  1AXD A;  5GSS A;  2DSA A;  4EE0 A;  3PR8 A;  2IL3 A;  1GUK A;  2EFH A;  2YCD A;  3KMN A;  2VCW A;  3ZMK A;  4AKX B;  4Q5F A; 
#chains in the Genus database with same CATH homology
 4PI0 C;  3RFR C;  3RGB C;  1YEW C;  4PHZ C;  4PI2 C;  3CHX C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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