4QH0A

Crystal structure of nuca from streptococcus agalactiae with magnesium ion bound
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
219
structure length
219
Chain Sequence
SVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLNADVNVKAYVQNTIDNQQRPSTANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGALIAYALAGNFKGWDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNVAIPNTQASYTMDYATGEITLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DNA-entry nuclease (Competence-specific nuclease)
publication title Structural characterization of the virulence factor nuclease A from Streptococcus agalactiae.
pubmed doi rcsb
source organism Streptococcus agalactiae ilri112
total genus 66
structure length 219
sequence length 219
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-05-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 4qh0A00
5DLWA 4GTXA 4QN0A 3OWVA 2XRGA 5IJQA 4ZGAA 1QL0A 5LQQA 4ZG6A 4ZG7A 5DLTA 2XGRA 1G8TA 5L0EA 5IJSA 4ZG9A 1SMNA 3NKQA 3WAWA 3NKPA 3NKNA 2O3BA 4QH0A 3ISMA 1ZM8A 5INHA 3S5BA 5GKCA 1QAEA 5GKPA 2XH3A 4GTZA 3WAYA 3NKMA 5LIAA 5HRTA 4QGOA 4A1NA 5L0BA 4GTYA 4B56A 5DLVA 3NKRA 5KXAA 2XR9A 3NKOA 4GTWA 5L0KA 3WAXA 4E3YA 3WAVA
chains in the Genus database with same CATH superfamily
5DLWA 4GTXA 4QN0A 3OWVA 2XRGA 5IJQA 4ZGAA 1QL0A 5LQQA 4ZG6A 4ZG7A 5DLTA 2XGRA 1G8TA 5L0EA 5IJSA 4ZG9A 1SMNA 3NKQA 3WAWA 3NKPA 3NKNA 2O3BA 4QH0A 3ISMA 1ZM8A 5INHA 3S5BA 5GKCA 1QAEA 5GKPA 2XH3A 4GTZA 3WAYA 3NKMA 5LIAA 5HRTA 4QGOA 4A1NA 5L0BA 4GTYA 4B56A 5DLVA 3NKRA 5KXAA 2XR9A 3NKOA 4GTWA 5L0KA 3WAXA 4E3YA 3WAVA
chains in the Genus database with same CATH topology
5DLWA 4GTXA 4QN0A 3OWVA 2XRGA 5IJQA 4ZGAA 1QL0A 5LQQA 4ZG6A 4ZG7A 5DLTA 2XGRA 1G8TA 5L0EA 5IJSA 4ZG9A 1SMNA 3NKQA 3WAWA 3NKPA 3NKNA 2O3BA 4QH0A 3ISMA 1ZM8A 5INHA 3S5BA 5GKCA 1QAEA 5GKPA 2XH3A 4GTZA 3WAYA 3NKMA 5LIAA 5HRTA 4QGOA 4A1NA 5L0BA 4GTYA 4B56A 5DLVA 3NKRA 5KXAA 2XR9A 3NKOA 4GTWA 5L0KA 3WAXA 4E3YA 3WAVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DLW A;  4GTX A;  4QN0 A;  3OWV A;  2XRG A;  5IJQ A;  4ZGA A;  1QL0 A;  5LQQ A;  4ZG6 A;  4ZG7 A;  5DLT A;  2XGR A;  1G8T A;  5L0E A;  5IJS A;  4ZG9 A;  1SMN A;  3NKQ A;  3WAW A;  3NKP A;  3NKN A;  2O3B A;  4QH0 A;  3ISM A;  1ZM8 A;  5INH A;  3S5B A;  5GKC A;  1QAE A;  5GKP A;  2XH3 A;  4GTZ A;  3WAY A;  3NKM A;  5LIA A;  5HRT A;  4QGO A;  4A1N A;  5L0B A;  4GTY A;  4B56 A;  5DLV A;  3NKR A;  5KXA A;  2XR9 A;  3NKO A;  4GTW A;  5L0K A;  3WAX A;  4E3Y A;  3WAV A; 
#chains in the Genus database with same CATH topology
 5DLW A;  4GTX A;  4QN0 A;  3OWV A;  2XRG A;  5IJQ A;  4ZGA A;  1QL0 A;  5LQQ A;  4ZG6 A;  4ZG7 A;  5DLT A;  2XGR A;  1G8T A;  5L0E A;  5IJS A;  4ZG9 A;  1SMN A;  3NKQ A;  3WAW A;  3NKP A;  3NKN A;  2O3B A;  4QH0 A;  3ISM A;  1ZM8 A;  5INH A;  3S5B A;  5GKC A;  1QAE A;  5GKP A;  2XH3 A;  4GTZ A;  3WAY A;  3NKM A;  5LIA A;  5HRT A;  4QGO A;  4A1N A;  5L0B A;  4GTY A;  4B56 A;  5DLV A;  3NKR A;  5KXA A;  2XR9 A;  3NKO A;  4GTW A;  5L0K A;  3WAX A;  4E3Y A;  3WAV A; 
#chains in the Genus database with same CATH homology
 5DLW A;  4GTX A;  4QN0 A;  3OWV A;  2XRG A;  5IJQ A;  4ZGA A;  1QL0 A;  5LQQ A;  4ZG6 A;  4ZG7 A;  5DLT A;  2XGR A;  1G8T A;  5L0E A;  5IJS A;  4ZG9 A;  1SMN A;  3NKQ A;  3WAW A;  3NKP A;  3NKN A;  2O3B A;  4QH0 A;  3ISM A;  1ZM8 A;  5INH A;  3S5B A;  5GKC A;  1QAE A;  5GKP A;  2XH3 A;  4GTZ A;  3WAY A;  3NKM A;  5LIA A;  5HRT A;  4QGO A;  4A1N A;  5L0B A;  4GTY A;  4B56 A;  5DLV A;  3NKR A;  5KXA A;  2XR9 A;  3NKO A;  4GTW A;  5L0K A;  3WAX A;  4E3Y A;  3WAV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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