4QKOA

The crystal structure of the pyocin s2 nuclease domain, immunity protein complex at 1.8 angstroms
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
87
structure length
87
Chain Sequence
MKSKISEYTEKEFLEFVKDIYTNNKKKFPTEESHIQAVLEFKKLTEHPSGSDLLYYPNENREDSPAGVVKEVKEWRASKGLPGFKAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords Pyocin-S2 immunity protein
publication title Structural Insights into pyocin S2
rcsb
source organism Pseudomonas aeruginosa
total genus 30
structure length 87
sequence length 87
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 4qkoA00
1IMPA 2K5XA 5EW5E 2ERHA 2JAZA 2VLOA 7CEIA 1EMVA 1FR2A 1AYIA 2GZJA 2VLQA 2WPTA 1CEIA 2GZGA 1BXIA 2VLNA 3GJNA 2NO8A 3GKLC 1IMQA 2GZIA 1UJZA 1ZNVA 2GYKA 2JBGA 1GXHA 2GZEA 1E0HA 3U43A 4F37A 2VLPA 2GZFA 1UNKA 1MZ8A 2JB0A 4QKOA 1GXGA 4UHPB 2K0DX
chains in the Genus database with same CATH superfamily
1IMPA 2K0XA 5EJDA 4PH0A 5HVCA 2OTJP 2JAZA 7CEIA 2WPTA 4U0AA 3GJNA 3LMOA 2NO8A 2N50A 2LPKA 5CZDB 4COCA 2JBGA 1YITP 2FQ2A 2M8NA 1YJNP 1GXGA 1DV5A 4UHPB 2EFJA 3CC2P 3G6EP 1M6NA 2PNGA 3OW2O 1K30A 3GZMA 2XZ0D 4H2XC 2LOLA 2AFEA 1UJZA 3MGEA 5HGMA 2KOSA 2KG9A 4MRTC 1X3OA 2PY8A 3H47A 1ACPA 2JGPA 4XFZA 2FQ1A 2M8PA 2P9XA 3CCQP 1M90Q 1A8OA 1A43A 2AFDA 3HZQA 2PEQA 4PWVB 1GXHA 2PEKA 2MY5A 4XRQA 4XFXA 5KP7B 2CWOA 4COPA 2M8LA 3CCJP 2K94A 3B4QA 2KODA 3H0DA 2JU2A 2CG5B 1IMQA 2PEJA 2Z46A 2GZIA 3RG6C 2KOPA 1AF8A 2LIUA 2FHSC 2CQ8A 1T8KA 2K5XA 1ZMBA 2JO0A 1Q82Q 2LKIA 3CXCO 2VLNA 2OTLP 1S72P 3DS5A 3H4EA 1VQ8P 2JU1A 2KG6A 4NEOA 2DNWA 1M6EX 3I55P 5KP6B 1VQPP 2XV6A 2E1MA 3CD6P 1NJIQ 2AVAA 1Q86Q 3E2DA 2VLQA 2CGQA 4WYMA 5HGOA 4GR6A 1BAJA 2N6YA 2GDXA 2LIWA 3I56P 1KLPA 1VQLP 3B5IA 5F2NA 2K0DX 3CPWO 1VQOP 4XROA 1N8RQ 3EJEA 3NY7B 2MVUA 2XZ1C 2N6ZA 3CC7P 2DGYA 2FVEA 5HV8A 1QRJA 2KW2A 3RG2A 1E6JP 3HYBA 1QVGO 2L9FA 4HKGA 1RO0A 2FVFA 4PH1A 2PENA 1D1DA 5HGNA 1AYIA 2GZJA 2GDWA 3G26A 1Q7YQ 3CCSP 1BXIA 2QEXP 1VKUA 4U0FA 4DG9A 1Z6MA 2VLPA 2JB0A 2N98A 2M5RA 2K0YA 1M74A 2PEIA 4U0BA 2PEOA 2EHTA 4R0MA 1EIAA 1VQ9P 2JYGA 3CMAP 3G21A 3G1GA 2FAEA 4CA3A 2FQ0A 4QKOA 3G0VA 4BPHA 2KGCA 4GR2A 1K8AQ 1YI2P 1W2BO 1AUMA 2MR7A 5DCKA 4H2WC 1YIJP 5HGLA 1E0HA 2BUOA 1RNIA 1GPJA 1UNKA 5BS1A 2VSQA 1VQ6P 1JJ2O 2LTEA 1VQ5P 5BS2A 4U0DA 1K9MQ 3DS4A 1EOQA 3CCVP 2GYKA 2ROQA 3CCRP 2EG5A 3P05A 1MZ8A 1NQ4A 3CCUP 3EJBA 5EW5E 1VQNP 2N5IA 3VRLC 2LMLA 3G4SP 2EIAA 1RO2A 2GZEA 2L6EA 4BPGA 5KP8B 3CMEP 1KC8Q 1Q81Q 4BPFA 4IZ6A 3DS2A 1VHNA 2XXMA 3M1MA 1HY8A 1OR5A 1KQSO 2CNRA 3GZLA 3G71P 2FVAA 3DTJA 3LRYA 3EJDA 5F2KA 2MR8A 1VQ7P 1K73Q 1M1KQ 2QA4P 4H2YC 3CE7A 3CCLP 3DS1A 4PXHB 1L0HA 3G29A 2K2QA 3NTEA 2KG8A 4M0IA 1YJWP 3Q20A 2L0QA 2LF4A 1IUQA 2ERHA 1YJ9P 3DPHA 2ONTA 1VQ4P 1QVFO 2K93A 2GZGA 2EHSA 3CCMP 2KOQA 1VQMP 3GKLC 2KGAA 2KR5A 2K92A 3CC4P 1YHQP 2FADA 4U0CA 1DNYA 3G28A 3G1IA 2LL8A 2MF4A 4XFYA 1KD1Q 5F2OA 2VLOA 1EMVA 1FR2A 5I4TG 1CEIA 2XT1A 3DS3A 4IPYA 3WBHA 1ZNVA 2JQ4A 2PEMA 2N5HA 3U43A 4F37A 2Z44A 3DS0A 2KGEA 1L0IA 2OARA 2QNWA 1F80D 2L4BA 3CCEP 2KWLA 4QNBA 2JYLA 2X2BA 2L22A 2GDYA 2AF8A 2MVVA 2KGDA 5JPAA 1HQBA 2Z45A 1VQKP 2KOOA 2BHVA 2FACA 4U0EA 2KORA 2MD9A 2GZFA
chains in the Genus database with same CATH topology
1IMPA 2K5XA 5EW5E 2ERHA 2JAZA 2VLOA 7CEIA 1EMVA 1FR2A 1AYIA 2GZJA 2VLQA 2WPTA 1CEIA 2GZGA 1BXIA 2VLNA 3GJNA 2NO8A 3GKLC 1IMQA 2GZIA 1UJZA 1ZNVA 2GYKA 2JBGA 1GXHA 2GZEA 1E0HA 3U43A 4F37A 2VLPA 2GZFA 1UNKA 1MZ8A 2JB0A 4QKOA 1GXGA 4UHPB 2K0DX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IMP A;  2K5X A;  5EW5 E;  2ERH A;  2JAZ A;  2VLO A;  7CEI A;  1EMV A;  1FR2 A;  1AYI A;  2GZJ A;  2VLQ A;  2WPT A;  1CEI A;  2GZG A;  1BXI A;  2VLN A;  3GJN A;  2NO8 A;  3GKL C;  1IMQ A;  2GZI A;  1UJZ A;  1ZNV A;  2GYK A;  2JBG A;  1GXH A;  2GZE A;  1E0H A;  3U43 A;  4F37 A;  2VLP A;  2GZF A;  1UNK A;  1MZ8 A;  2JB0 A;  4QKO A;  1GXG A;  4UHP B;  2K0D X; 
#chains in the Genus database with same CATH topology
 1IMP A;  2K0X A;  5EJD A;  4PH0 A;  5HVC A;  2OTJ P;  2JAZ A;  7CEI A;  2WPT A;  4U0A A;  3GJN A;  3LMO A;  2NO8 A;  2N50 A;  2LPK A;  5CZD B;  4COC A;  2JBG A;  1YIT P;  2FQ2 A;  2M8N A;  1YJN P;  1GXG A;  1DV5 A;  4UHP B;  2EFJ A;  3CC2 P;  3G6E P;  1M6N A;  2PNG A;  3OW2 O;  1K30 A;  3GZM A;  2XZ0 D;  4H2X C;  2LOL A;  2AFE A;  1UJZ A;  3MGE A;  5HGM A;  2KOS A;  2KG9 A;  4MRT C;  1X3O A;  2PY8 A;  3H47 A;  1ACP A;  2JGP A;  4XFZ A;  2FQ1 A;  2M8P A;  2P9X A;  3CCQ P;  1M90 Q;  1A8O A;  1A43 A;  2AFD A;  3HZQ A;  2PEQ A;  4PWV B;  1GXH A;  2PEK A;  2MY5 A;  4XRQ A;  4XFX A;  5KP7 B;  2CWO A;  4COP A;  2M8L A;  3CCJ P;  2K94 A;  3B4Q A;  2KOD A;  3H0D A;  2JU2 A;  2CG5 B;  1IMQ A;  2PEJ A;  2Z46 A;  2GZI A;  3RG6 C;  2KOP A;  1AF8 A;  2LIU A;  2FHS C;  2CQ8 A;  1T8K A;  2K5X A;  1ZMB A;  2JO0 A;  1Q82 Q;  2LKI A;  3CXC O;  2VLN A;  2OTL P;  1S72 P;  3DS5 A;  3H4E A;  1VQ8 P;  2JU1 A;  2KG6 A;  4NEO A;  2DNW A;  1M6E X;  3I55 P;  5KP6 B;  1VQP P;  2XV6 A;  2E1M A;  3CD6 P;  1NJI Q;  2AVA A;  1Q86 Q;  3E2D A;  2VLQ A;  2CGQ A;  4WYM A;  5HGO A;  4GR6 A;  1BAJ A;  2N6Y A;  2GDX A;  2LIW A;  3I56 P;  1KLP A;  1VQL P;  3B5I A;  5F2N A;  2K0D X;  3CPW O;  1VQO P;  4XRO A;  1N8R Q;  3EJE A;  3NY7 B;  2MVU A;  2XZ1 C;  2N6Z A;  3CC7 P;  2DGY A;  2FVE A;  5HV8 A;  1QRJ A;  2KW2 A;  3RG2 A;  1E6J P;  3HYB A;  1QVG O;  2L9F A;  4HKG A;  1RO0 A;  2FVF A;  4PH1 A;  2PEN A;  1D1D A;  5HGN A;  1AYI A;  2GZJ A;  2GDW A;  3G26 A;  1Q7Y Q;  3CCS P;  1BXI A;  2QEX P;  1VKU A;  4U0F A;  4DG9 A;  1Z6M A;  2VLP A;  2JB0 A;  2N98 A;  2M5R A;  2K0Y A;  1M74 A;  2PEI A;  4U0B A;  2PEO A;  2EHT A;  4R0M A;  1EIA A;  1VQ9 P;  2JYG A;  3CMA P;  3G21 A;  3G1G A;  2FAE A;  4CA3 A;  2FQ0 A;  4QKO A;  3G0V A;  4BPH A;  2KGC A;  4GR2 A;  1K8A Q;  1YI2 P;  1W2B O;  1AUM A;  2MR7 A;  5DCK A;  4H2W C;  1YIJ P;  5HGL A;  1E0H A;  2BUO A;  1RNI A;  1GPJ A;  1UNK A;  5BS1 A;  2VSQ A;  1VQ6 P;  1JJ2 O;  2LTE A;  1VQ5 P;  5BS2 A;  4U0D A;  1K9M Q;  3DS4 A;  1EOQ A;  3CCV P;  2GYK A;  2ROQ A;  3CCR P;  2EG5 A;  3P05 A;  1MZ8 A;  1NQ4 A;  3CCU P;  3EJB A;  5EW5 E;  1VQN P;  2N5I A;  3VRL C;  2LML A;  3G4S P;  2EIA A;  1RO2 A;  2GZE A;  2L6E A;  4BPG A;  5KP8 B;  3CME P;  1KC8 Q;  1Q81 Q;  4BPF A;  4IZ6 A;  3DS2 A;  1VHN A;  2XXM A;  3M1M A;  1HY8 A;  1OR5 A;  1KQS O;  2CNR A;  3GZL A;  3G71 P;  2FVA A;  3DTJ A;  3LRY A;  3EJD A;  5F2K A;  2MR8 A;  1VQ7 P;  1K73 Q;  1M1K Q;  2QA4 P;  4H2Y C;  3CE7 A;  3CCL P;  3DS1 A;  4PXH B;  1L0H A;  3G29 A;  2K2Q A;  3NTE A;  2KG8 A;  4M0I A;  1YJW P;  3Q20 A;  2L0Q A;  2LF4 A;  1IUQ A;  2ERH A;  1YJ9 P;  3DPH A;  2ONT A;  1VQ4 P;  1QVF O;  2K93 A;  2GZG A;  2EHS A;  3CCM P;  2KOQ A;  1VQM P;  3GKL C;  2KGA A;  2KR5 A;  2K92 A;  3CC4 P;  1YHQ P;  2FAD A;  4U0C A;  1DNY A;  3G28 A;  3G1I A;  2LL8 A;  2MF4 A;  4XFY A;  1KD1 Q;  5F2O A;  2VLO A;  1EMV A;  1FR2 A;  5I4T G;  1CEI A;  2XT1 A;  3DS3 A;  4IPY A;  3WBH A;  1ZNV A;  2JQ4 A;  2PEM A;  2N5H A;  3U43 A;  4F37 A;  2Z44 A;  3DS0 A;  2KGE A;  1L0I A;  2OAR A;  2QNW A;  1F80 D;  2L4B A;  3CCE P;  2KWL A;  4QNB A;  2JYL A;  2X2B A;  2L22 A;  2GDY A;  2AF8 A;  2MVV A;  2KGD A;  5JPA A;  1HQB A;  2Z45 A;  1VQK P;  2KOO A;  2BHV A;  2FAC A;  4U0E A;  2KOR A;  2MD9 A;  2GZF A; 
#chains in the Genus database with same CATH homology
 1IMP A;  2K5X A;  5EW5 E;  2ERH A;  2JAZ A;  2VLO A;  7CEI A;  1EMV A;  1FR2 A;  1AYI A;  2GZJ A;  2VLQ A;  2WPT A;  1CEI A;  2GZG A;  1BXI A;  2VLN A;  3GJN A;  2NO8 A;  3GKL C;  1IMQ A;  2GZI A;  1UJZ A;  1ZNV A;  2GYK A;  2JBG A;  1GXH A;  2GZE A;  1E0H A;  3U43 A;  4F37 A;  2VLP A;  2GZF A;  1UNK A;  1MZ8 A;  2JB0 A;  4QKO A;  1GXG A;  4UHP B;  2K0D X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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