4QOOA

Structure of bacillus pumilus catalase with resorcinol bound.
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
480
structure length
480
Chain Sequence
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
source organism Bacillus pumilus
total genus 154
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qooA00
2A9EA 1F4JA 2J2MA 1H7KA 2XQ1A 4ENSA 4QOPA 4QOQA 4QOOA 4B40A 3TTTA 3PQ2A 3ZJ4A 4ENUA 3TTXA 1GGHA 1E93A 1H6NA 3P9PA 4QOLA 2CAHA 1U5UA 3PQ8A 3P9SA 1SI8A 1NM0A 3VU3A 3TTVA 4AUMA 2IQFA 1A4EA 3PQ3A 4B5KA 1CF9A 3DY5A 1GG9A 1M85A 1GGJA 1SY7A 4AULA 1IPHA 1GGEA 1GWFA 4QONA 1QF7A 3PQ4A 3EJ6A 1P81A 1M7SA 1QWSA 1P7YA 4AJ9A 4AUNA 1GWHA 1GGFA 1P80A 4BIMA 4ENTA 3HB6A 1GWEA 1QWLA 4ENRA 2CAGA 4BFLA 1MQFA 3P9RA 1QWMA 4B7AA 4B31A 4CABA 1GGKA 4ENWA 3PQ5A 4QORA 3P9QA 4E37A 3PQ6A 4ENPA 4ENQA 1HBZA 2IUFA 4QOMA 3PQ7A 5BV2P 1P7ZA 3TTUA 2XF2A 4ENVA 4B2YA 3TTWA 2ISAA 4AUEA 3ZJ5A
chains in the Genus database with same CATH superfamily
1TGUA 4B7GA 2A9EA 1F4JA 2J2MA 4BLCA 1H7KA 2XQ1A 3NWLA 4QOPA 3E4WA 4ENSA 4QOQA 4QOOA 5GKNA 4B40A 3TTTA 3PQ2A 3ZJ4A 4ENUA 3TTXA 1TH2A 1GGHA 1E93A 3RGPA 1H6NA 3P9PA 4QOLA 2CAHA 1U5UA 3PQ8A 1DGBA 3P9SA 8CATA 1DGHA 1DGGA 1SI8A 1NM0A 3VU3A 3TTVA 4AUMA 2IQFA 1A4EA 3PQ3A 4B5KA 1CF9A 3DY5A 1GG9A 1M85A 1GGJA 1SY7A 4AULA 1IPHA 1GGEA 1GWFA 4QONA 1QF7A 3PQ4A 1DGHB 3EJ6A 1P81A 1M7SA 1QWSA 7CATA 1P7YA 4AJ9A 4AUNA 1GWHA 1GGFA 1P80A 3RGSA 4BIMA 4ENTA 3HB6A 1GWEA 1QWLA 4ENRA 2CAGA 4BFLA 1QQWA 1MQFA 3P9RA 1QWMA 4B7HA 4B7AA 4B31A 4CABA 1GGKA 4ENWA 3PQ5A 4QORA 3P9QA 4E37A 4B7FA 3PQ6A 4ENPA 4ENQA 1HBZA 2IUFA 4QOMA 3RE8A 3PQ7A 5BV2P 1P7ZA 1TH3A 2XF2A 3TTUA 4ENVA 4B2YA 1DGFA 3TTWA 2ISAA 3J7BA 4AUEA 3ZJ5A 1TH4A 3E4YA
chains in the Genus database with same CATH topology
2A9EA 1F4JA 2J2MA 1H7KA 2XQ1A 4ENSA 4QOPA 4QOQA 4QOOA 4B40A 3TTTA 3PQ2A 3ZJ4A 4ENUA 3TTXA 1GGHA 1E93A 1H6NA 3P9PA 4QOLA 2CAHA 1U5UA 3PQ8A 3P9SA 1SI8A 1NM0A 3VU3A 3TTVA 4AUMA 2IQFA 1A4EA 3PQ3A 4B5KA 1CF9A 3DY5A 1GG9A 1M85A 1GGJA 1SY7A 4AULA 1IPHA 1GGEA 1GWFA 4QONA 1QF7A 3PQ4A 3EJ6A 1P81A 1M7SA 1QWSA 1P7YA 4AJ9A 4AUNA 1GWHA 1GGFA 1P80A 4BIMA 4ENTA 3HB6A 1GWEA 1QWLA 4ENRA 2CAGA 4BFLA 1MQFA 3P9RA 1QWMA 4B7AA 4B31A 4CABA 1GGKA 4ENWA 3PQ5A 4QORA 3P9QA 4E37A 3PQ6A 4ENPA 4ENQA 1HBZA 2IUFA 4QOMA 3PQ7A 5BV2P 1P7ZA 3TTUA 2XF2A 4ENVA 4B2YA 3TTWA 2ISAA 4AUEA 3ZJ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A9E A;  1F4J A;  2J2M A;  1H7K A;  2XQ1 A;  4ENS A;  4QOP A;  4QOQ A;  4QOO A;  4B40 A;  3TTT A;  3PQ2 A;  3ZJ4 A;  4ENU A;  3TTX A;  1GGH A;  1E93 A;  1H6N A;  3P9P A;  4QOL A;  2CAH A;  1U5U A;  3PQ8 A;  3P9S A;  1SI8 A;  1NM0 A;  3VU3 A;  3TTV A;  4AUM A;  2IQF A;  1A4E A;  3PQ3 A;  4B5K A;  1CF9 A;  3DY5 A;  1GG9 A;  1M85 A;  1GGJ A;  1SY7 A;  4AUL A;  1IPH A;  1GGE A;  1GWF A;  4QON A;  1QF7 A;  3PQ4 A;  3EJ6 A;  1P81 A;  1M7S A;  1QWS A;  1P7Y A;  4AJ9 A;  4AUN A;  1GWH A;  1GGF A;  1P80 A;  4BIM A;  4ENT A;  3HB6 A;  1GWE A;  1QWL A;  4ENR A;  2CAG A;  4BFL A;  1MQF A;  3P9R A;  1QWM A;  4B7A A;  4B31 A;  4CAB A;  1GGK A;  4ENW A;  3PQ5 A;  4QOR A;  3P9Q A;  4E37 A;  3PQ6 A;  4ENP A;  4ENQ A;  1HBZ A;  2IUF A;  4QOM A;  3PQ7 A;  5BV2 P;  1P7Z A;  3TTU A;  2XF2 A;  4ENV A;  4B2Y A;  3TTW A;  2ISA A;  4AUE A;  3ZJ5 A; 
#chains in the Genus database with same CATH topology
 1TGU A;  4B7G A;  2A9E A;  1F4J A;  2J2M A;  4BLC A;  1H7K A;  2XQ1 A;  3NWL A;  4QOP A;  3E4W A;  4ENS A;  4QOQ A;  4QOO A;  5GKN A;  4B40 A;  3TTT A;  3PQ2 A;  3ZJ4 A;  4ENU A;  3TTX A;  1TH2 A;  1GGH A;  1E93 A;  3RGP A;  1H6N A;  3P9P A;  4QOL A;  2CAH A;  1U5U A;  3PQ8 A;  1DGB A;  3P9S A;  8CAT A;  1DGH A;  1DGG A;  1SI8 A;  1NM0 A;  3VU3 A;  3TTV A;  4AUM A;  2IQF A;  1A4E A;  3PQ3 A;  4B5K A;  1CF9 A;  3DY5 A;  1GG9 A;  1M85 A;  1GGJ A;  1SY7 A;  4AUL A;  1IPH A;  1GGE A;  1GWF A;  4QON A;  1QF7 A;  3PQ4 A;  1DGH B;  3EJ6 A;  1P81 A;  1M7S A;  1QWS A;  7CAT A;  1P7Y A;  4AJ9 A;  4AUN A;  1GWH A;  1GGF A;  1P80 A;  3RGS A;  4BIM A;  4ENT A;  3HB6 A;  1GWE A;  1QWL A;  4ENR A;  2CAG A;  4BFL A;  1QQW A;  1MQF A;  3P9R A;  1QWM A;  4B7H A;  4B7A A;  4B31 A;  4CAB A;  1GGK A;  4ENW A;  3PQ5 A;  4QOR A;  3P9Q A;  4E37 A;  4B7F A;  3PQ6 A;  4ENP A;  4ENQ A;  1HBZ A;  2IUF A;  4QOM A;  3RE8 A;  3PQ7 A;  5BV2 P;  1P7Z A;  1TH3 A;  2XF2 A;  3TTU A;  4ENV A;  4B2Y A;  1DGF A;  3TTW A;  2ISA A;  3J7B A;  4AUE A;  3ZJ5 A;  1TH4 A;  3E4Y A; 
#chains in the Genus database with same CATH homology
 2A9E A;  1F4J A;  2J2M A;  1H7K A;  2XQ1 A;  4ENS A;  4QOP A;  4QOQ A;  4QOO A;  4B40 A;  3TTT A;  3PQ2 A;  3ZJ4 A;  4ENU A;  3TTX A;  1GGH A;  1E93 A;  1H6N A;  3P9P A;  4QOL A;  2CAH A;  1U5U A;  3PQ8 A;  3P9S A;  1SI8 A;  1NM0 A;  3VU3 A;  3TTV A;  4AUM A;  2IQF A;  1A4E A;  3PQ3 A;  4B5K A;  1CF9 A;  3DY5 A;  1GG9 A;  1M85 A;  1GGJ A;  1SY7 A;  4AUL A;  1IPH A;  1GGE A;  1GWF A;  4QON A;  1QF7 A;  3PQ4 A;  3EJ6 A;  1P81 A;  1M7S A;  1QWS A;  1P7Y A;  4AJ9 A;  4AUN A;  1GWH A;  1GGF A;  1P80 A;  4BIM A;  4ENT A;  3HB6 A;  1GWE A;  1QWL A;  4ENR A;  2CAG A;  4BFL A;  1MQF A;  3P9R A;  1QWM A;  4B7A A;  4B31 A;  4CAB A;  1GGK A;  4ENW A;  3PQ5 A;  4QOR A;  3P9Q A;  4E37 A;  3PQ6 A;  4ENP A;  4ENQ A;  1HBZ A;  2IUF A;  4QOM A;  3PQ7 A;  5BV2 P;  1P7Z A;  3TTU A;  2XF2 A;  4ENV A;  4B2Y A;  3TTW A;  2ISA A;  4AUE A;  3ZJ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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