4RHMA

Crystal structure of t. brucei arginase-like protein quadruple mutant s149d/r151h/s153d/s226d
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
308
structure length
308
Chain Sequence
SHMFSKFLMNVKGVTPRGSDWANRLGPVALFGYGAGMPRRAPLLDFFLQSPRDCDHYAELTIHDKGPIECPPETVMFMPVLNCGQMLDEAAGTETPTSDEWYLGSLEASTELLEKGYVPVSVGGDGSATLSMVEAYKRLFPSDDIVIVHFDAHPDVSDPRSPLRVLLDKGLLKGVVSVGNRQVSSEDRKVRKLHKMFYMDMHAIYSKGLFCIRDIRNDYPVFISIDADVLDPAFAPAVDSPVAGGLSTRDLLHIMNGIRGPKVVGIDVYGYNPDLDVYRKDNVGLTAIALSKIIKEGILKAYSISTHT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Arginase
publication title Crystal Structure of an Arginase-like Protein from Trypanosoma brucei That Evolved without a Binuclear Manganese Cluster.
pubmed doi rcsb
source organism Trypanosoma brucei brucei
total genus 109
structure length 308
sequence length 308
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2014-10-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 4rhmA00
4Q3SA 3MFWA 1P8NA 2A0MA 4MYKA 1T4SA 4MYFA 4MYNA 4GSMA 1WOHA 4MYLA 3TF3A 5HJAA 4HWWA 4IU1A 1HQFA 4RHLA 1T4PA 3RLAA 4GWDA 2AEBA 3GMZA 4ITYA 2PHOA 3E9BA 1P8SA 4DZ4A 3E8QA 4IXVA 4IE3A 4RHJA 3DJ8A 3KV2A 4MXRA 4RLAA 2PLLA 3E6KA 3LP4A 3M1RA 3THHA 1TA1A 1WVBA 3GN0A 4IE1A 4IU0A 4Q42A 1D3VA 4Q3VA 2EF4A 1P8PA 4Q3RA 1R1OA 4Q3QA 1P8QA 1T4TA 3NIPA 1TBHA 4Q41A 4IE2A 1T4RA 3SL1A 1T5FA 1HQGA 4G3HA 3E8ZA 3MFVA 3F80A 4IU4A 1ZPGA 1CEVA 4Q3PA 3THJA 1TBJA 4HZEA 4Q40A 1P8RA 1HQHA 4Q3UA 5CEVA 3PZLA 1WOGA 2CEVA 4RHIA 1GQ7A 3LHLA 4FCKA 4FCIA 1GQ6A 4GSZA 1PQ3A 3CEVA 3NIOA 2PHAA 4HXQA 4I06A 4RHMA 1HQXA 5HJ9A 4Q3TA 2EF5A 4RHQA 1TBLA 3LP7A 1XFKA 1P8OA 4RHKA 3MMRA 1WVAA 3SKKA 1RLAA 4CEVA 4IU5A 4IXUA 3SJTA 4Q3RC 3MJLA 1P8MA 2ZAVA 1HQ5A 3E6VA 5RLAA 1ZPEA 1T5GA 4GWCA 2EIVA 3NIQA 1WOIA 3TH7A 4GSVA 3SL0A 3THEA 2RLAA
chains in the Genus database with same CATH superfamily
5EFGA 4Q3SA 3F0RA 4ZUMA 3EZTA 5EF7A 3MFWA 1P8NA 2A0MA 4MYKA 1T4SA 5EENA 4MYFA 5ICNB 1VKGA 5G12A 4MYNA 4GSMA 1WOHA 5D1CA 4MYLA 3C0YA 5THSA 4CQFA 3TF3A 4RN0A 5HJAA 4HWWA 5EEKA 5EFJD 5FCWA 5BWZA 4QA3A 4IU1A 1HQFA 4QA0A 5EFNA 4RHLA 5G10A 1T4PA 3RLAA 4CBYA 4BZ8A 1T69A 4GWDA 5D1BA 2AEBA 3GMZA 4ITYA 2PHOA 1ZZ0A 1P8SA 3E9BA 4DZ4A 3E8QA 5G11A 5JI5A 4IXVA 4IE3A 4RHJA 3SFFA 3DJ8A 3Q9EA 3KV2A 5DC8A 4MXRA 5EFHA 4RLAA 2PLLA 3E6KA 3F06A 3LP4A 3M1RA 3THHA 4CBTA 1ZZ1A 4ZURA 1TA1A 5DC5A 1WVBA 5THTA 3GN0A 1W22A 3MZ6A 4A69A 4IE1A 4IU0A 4Q42A 5DC6A 1D3VA 4Q3VA 1C3RA 2GH6A 4BZ5A 2EF4A 3MZ4A 5G13A 1P8PA 3C0ZA 4Q3RA 1R1OA 4Q3QA 5EEIA 5G0YA 3EW8A 4QA2A 4QA5A 1P8QA 1T4TA 2VQMA 3MZ3A 1TBHA 3NIPA 5G1AA 4Q41A 4IE2A 5IWGA 5G1CA 5G0GA 3C10A 5EF8A 4ZUOA 1T4RA 3SL1A 1T5FA 5G0IA 5G3WA 1HQGA 3Q9BA 4G3HA 3MENA 3E8ZA 3MFVA 3F80A 4IU4A 3MAXA 4RN1A 5G0XA 1ZPGA 3EZPA 1CEVA 4LXZA 4Q3PA 5FUEA 3EWFA 3THJA 1TBJA 4HZEA 2VQJA 4Q40A 1P8RA 3Q9FA 1HQHA 1T67A 4Q3UA 3PZLA 1WOGA 2CEVA 4RHIA 4BZ9A 4RN2A 5CEVA 2VQOA 1GQ7A 4QA4A 3F07A 4BKXB 3LHLA 1ZZ3A 2VCGA 4FCKA 5G0JA 5A2SA 4QA7A 3ZNSA 4FCIA 3MZ7A 1GQ6A 4GSZA 1PQ3A 3CEVA 3Q9CA 5EFBD 3NIOA 4BZ6A 2PHAA 4HXQA 2VQWG 4I06A 4RHMA 3ZNRA 3SFHA 1HQXA 5HJ9A 4BZ7A 4Q3TA 2EF5A 4RHQA 5THUA 1TBLA 4ZUNA 3LP7A 5G17A 1XFKA 1P8OA 4LY1A 4RHKA 5G0HA 2V5WA 1WVAA 3MMRA 3SKKA 5D1DA 1RLAA 3RQDA 4CEVA 1C3PA 4IU5A 4IXUA 3SJTA 5EEMA 5EEFA 4ZUPA 4Q3RC 4QA1A 3MJLA 5EFKB 5G1BA 1P8MA 2ZAVA 1HQ5A 3E6VA 5RLAA 1ZPEA 1T5GA 5LI3A 1C3SA 2V5XA 2EIVA 4GWCA 3NIQA 5IX0A 5THVA 1WOIA 4ZUQA 3TH7A 2VQVA 5DC7A 4GSVA 3SL0A 1T64A 3THEA 2VQQA 4QA6A 2RLAA
chains in the Genus database with same CATH topology
4Q3SA 3MFWA 1P8NA 2A0MA 4MYKA 1T4SA 4MYFA 4MYNA 4GSMA 1WOHA 4MYLA 3TF3A 5HJAA 4HWWA 4IU1A 1HQFA 4RHLA 1T4PA 3RLAA 4GWDA 2AEBA 3GMZA 4ITYA 2PHOA 3E9BA 1P8SA 4DZ4A 3E8QA 4IXVA 4IE3A 4RHJA 3DJ8A 3KV2A 4MXRA 4RLAA 2PLLA 3E6KA 3LP4A 3M1RA 3THHA 1TA1A 1WVBA 3GN0A 4IE1A 4IU0A 4Q42A 1D3VA 4Q3VA 2EF4A 1P8PA 4Q3RA 1R1OA 4Q3QA 1P8QA 1T4TA 3NIPA 1TBHA 4Q41A 4IE2A 1T4RA 3SL1A 1T5FA 1HQGA 4G3HA 3E8ZA 3MFVA 3F80A 4IU4A 1ZPGA 1CEVA 4Q3PA 3THJA 1TBJA 4HZEA 4Q40A 1P8RA 1HQHA 4Q3UA 5CEVA 3PZLA 1WOGA 2CEVA 4RHIA 1GQ7A 3LHLA 4FCKA 4FCIA 1GQ6A 4GSZA 1PQ3A 3CEVA 3NIOA 2PHAA 4HXQA 4I06A 4RHMA 1HQXA 5HJ9A 4Q3TA 2EF5A 4RHQA 1TBLA 3LP7A 1XFKA 1P8OA 4RHKA 3MMRA 1WVAA 3SKKA 1RLAA 4CEVA 4IU5A 4IXUA 3SJTA 4Q3RC 3MJLA 1P8MA 2ZAVA 1HQ5A 3E6VA 5RLAA 1ZPEA 1T5GA 4GWCA 2EIVA 3NIQA 1WOIA 3TH7A 4GSVA 3SL0A 3THEA 2RLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q3S A;  3MFW A;  1P8N A;  2A0M A;  4MYK A;  1T4S A;  4MYF A;  4MYN A;  4GSM A;  1WOH A;  4MYL A;  3TF3 A;  5HJA A;  4HWW A;  4IU1 A;  1HQF A;  4RHL A;  1T4P A;  3RLA A;  4GWD A;  2AEB A;  3GMZ A;  4ITY A;  2PHO A;  3E9B A;  1P8S A;  4DZ4 A;  3E8Q A;  4IXV A;  4IE3 A;  4RHJ A;  3DJ8 A;  3KV2 A;  4MXR A;  4RLA A;  2PLL A;  3E6K A;  3LP4 A;  3M1R A;  3THH A;  1TA1 A;  1WVB A;  3GN0 A;  4IE1 A;  4IU0 A;  4Q42 A;  1D3V A;  4Q3V A;  2EF4 A;  1P8P A;  4Q3R A;  1R1O A;  4Q3Q A;  1P8Q A;  1T4T A;  3NIP A;  1TBH A;  4Q41 A;  4IE2 A;  1T4R A;  3SL1 A;  1T5F A;  1HQG A;  4G3H A;  3E8Z A;  3MFV A;  3F80 A;  4IU4 A;  1ZPG A;  1CEV A;  4Q3P A;  3THJ A;  1TBJ A;  4HZE A;  4Q40 A;  1P8R A;  1HQH A;  4Q3U A;  5CEV A;  3PZL A;  1WOG A;  2CEV A;  4RHI A;  1GQ7 A;  3LHL A;  4FCK A;  4FCI A;  1GQ6 A;  4GSZ A;  1PQ3 A;  3CEV A;  3NIO A;  2PHA A;  4HXQ A;  4I06 A;  4RHM A;  1HQX A;  5HJ9 A;  4Q3T A;  2EF5 A;  4RHQ A;  1TBL A;  3LP7 A;  1XFK A;  1P8O A;  4RHK A;  3MMR A;  1WVA A;  3SKK A;  1RLA A;  4CEV A;  4IU5 A;  4IXU A;  3SJT A;  4Q3R C;  3MJL A;  1P8M A;  2ZAV A;  1HQ5 A;  3E6V A;  5RLA A;  1ZPE A;  1T5G A;  4GWC A;  2EIV A;  3NIQ A;  1WOI A;  3TH7 A;  4GSV A;  3SL0 A;  3THE A;  2RLA A; 
#chains in the Genus database with same CATH topology
 5EFG A;  4Q3S A;  3F0R A;  4ZUM A;  3EZT A;  5EF7 A;  3MFW A;  1P8N A;  2A0M A;  4MYK A;  1T4S A;  5EEN A;  4MYF A;  5ICN B;  1VKG A;  5G12 A;  4MYN A;  4GSM A;  1WOH A;  5D1C A;  4MYL A;  3C0Y A;  5THS A;  4CQF A;  3TF3 A;  4RN0 A;  5HJA A;  4HWW A;  5EEK A;  5EFJ D;  5FCW A;  5BWZ A;  4QA3 A;  4IU1 A;  1HQF A;  4QA0 A;  5EFN A;  4RHL A;  5G10 A;  1T4P A;  3RLA A;  4CBY A;  4BZ8 A;  1T69 A;  4GWD A;  5D1B A;  2AEB A;  3GMZ A;  4ITY A;  2PHO A;  1ZZ0 A;  1P8S A;  3E9B A;  4DZ4 A;  3E8Q A;  5G11 A;  5JI5 A;  4IXV A;  4IE3 A;  4RHJ A;  3SFF A;  3DJ8 A;  3Q9E A;  3KV2 A;  5DC8 A;  4MXR A;  5EFH A;  4RLA A;  2PLL A;  3E6K A;  3F06 A;  3LP4 A;  3M1R A;  3THH A;  4CBT A;  1ZZ1 A;  4ZUR A;  1TA1 A;  5DC5 A;  1WVB A;  5THT A;  3GN0 A;  1W22 A;  3MZ6 A;  4A69 A;  4IE1 A;  4IU0 A;  4Q42 A;  5DC6 A;  1D3V A;  4Q3V A;  1C3R A;  2GH6 A;  4BZ5 A;  2EF4 A;  3MZ4 A;  5G13 A;  1P8P A;  3C0Z A;  4Q3R A;  1R1O A;  4Q3Q A;  5EEI A;  5G0Y A;  3EW8 A;  4QA2 A;  4QA5 A;  1P8Q A;  1T4T A;  2VQM A;  3MZ3 A;  1TBH A;  3NIP A;  5G1A A;  4Q41 A;  4IE2 A;  5IWG A;  5G1C A;  5G0G A;  3C10 A;  5EF8 A;  4ZUO A;  1T4R A;  3SL1 A;  1T5F A;  5G0I A;  5G3W A;  1HQG A;  3Q9B A;  4G3H A;  3MEN A;  3E8Z A;  3MFV A;  3F80 A;  4IU4 A;  3MAX A;  4RN1 A;  5G0X A;  1ZPG A;  3EZP A;  1CEV A;  4LXZ A;  4Q3P A;  5FUE A;  3EWF A;  3THJ A;  1TBJ A;  4HZE A;  2VQJ A;  4Q40 A;  1P8R A;  3Q9F A;  1HQH A;  1T67 A;  4Q3U A;  3PZL A;  1WOG A;  2CEV A;  4RHI A;  4BZ9 A;  4RN2 A;  5CEV A;  2VQO A;  1GQ7 A;  4QA4 A;  3F07 A;  4BKX B;  3LHL A;  1ZZ3 A;  2VCG A;  4FCK A;  5G0J A;  5A2S A;  4QA7 A;  3ZNS A;  4FCI A;  3MZ7 A;  1GQ6 A;  4GSZ A;  1PQ3 A;  3CEV A;  3Q9C A;  5EFB D;  3NIO A;  4BZ6 A;  2PHA A;  4HXQ A;  2VQW G;  4I06 A;  4RHM A;  3ZNR A;  3SFH A;  1HQX A;  5HJ9 A;  4BZ7 A;  4Q3T A;  2EF5 A;  4RHQ A;  5THU A;  1TBL A;  4ZUN A;  3LP7 A;  5G17 A;  1XFK A;  1P8O A;  4LY1 A;  4RHK A;  5G0H A;  2V5W A;  1WVA A;  3MMR A;  3SKK A;  5D1D A;  1RLA A;  3RQD A;  4CEV A;  1C3P A;  4IU5 A;  4IXU A;  3SJT A;  5EEM A;  5EEF A;  4ZUP A;  4Q3R C;  4QA1 A;  3MJL A;  5EFK B;  5G1B A;  1P8M A;  2ZAV A;  1HQ5 A;  3E6V A;  5RLA A;  1ZPE A;  1T5G A;  5LI3 A;  1C3S A;  2V5X A;  2EIV A;  4GWC A;  3NIQ A;  5IX0 A;  5THV A;  1WOI A;  4ZUQ A;  3TH7 A;  2VQV A;  5DC7 A;  4GSV A;  3SL0 A;  1T64 A;  3THE A;  2VQQ A;  4QA6 A;  2RLA A; 
#chains in the Genus database with same CATH homology
 4Q3S A;  3MFW A;  1P8N A;  2A0M A;  4MYK A;  1T4S A;  4MYF A;  4MYN A;  4GSM A;  1WOH A;  4MYL A;  3TF3 A;  5HJA A;  4HWW A;  4IU1 A;  1HQF A;  4RHL A;  1T4P A;  3RLA A;  4GWD A;  2AEB A;  3GMZ A;  4ITY A;  2PHO A;  3E9B A;  1P8S A;  4DZ4 A;  3E8Q A;  4IXV A;  4IE3 A;  4RHJ A;  3DJ8 A;  3KV2 A;  4MXR A;  4RLA A;  2PLL A;  3E6K A;  3LP4 A;  3M1R A;  3THH A;  1TA1 A;  1WVB A;  3GN0 A;  4IE1 A;  4IU0 A;  4Q42 A;  1D3V A;  4Q3V A;  2EF4 A;  1P8P A;  4Q3R A;  1R1O A;  4Q3Q A;  1P8Q A;  1T4T A;  3NIP A;  1TBH A;  4Q41 A;  4IE2 A;  1T4R A;  3SL1 A;  1T5F A;  1HQG A;  4G3H A;  3E8Z A;  3MFV A;  3F80 A;  4IU4 A;  1ZPG A;  1CEV A;  4Q3P A;  3THJ A;  1TBJ A;  4HZE A;  4Q40 A;  1P8R A;  1HQH A;  4Q3U A;  5CEV A;  3PZL A;  1WOG A;  2CEV A;  4RHI A;  1GQ7 A;  3LHL A;  4FCK A;  4FCI A;  1GQ6 A;  4GSZ A;  1PQ3 A;  3CEV A;  3NIO A;  2PHA A;  4HXQ A;  4I06 A;  4RHM A;  1HQX A;  5HJ9 A;  4Q3T A;  2EF5 A;  4RHQ A;  1TBL A;  3LP7 A;  1XFK A;  1P8O A;  4RHK A;  3MMR A;  1WVA A;  3SKK A;  1RLA A;  4CEV A;  4IU5 A;  4IXU A;  3SJT A;  4Q3R C;  3MJL A;  1P8M A;  2ZAV A;  1HQ5 A;  3E6V A;  5RLA A;  1ZPE A;  1T5G A;  4GWC A;  2EIV A;  3NIQ A;  1WOI A;  3TH7 A;  4GSV A;  3SL0 A;  3THE A;  2RLA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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