4RUBS

A crystal form of ribulose-1,5-bisphosphate carboxylase(slash)oxygenase from nicotiana tabacum in the activated state
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
123
structure length
123
Chain Sequence
MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVGEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase(carbon-carbon)
molecule keywords RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV)
publication title A crystal form of ribulose-1,5-bisphosphate carboxylase/oxygenase from Nicotiana tabacum in the activated state.
pubmed doi rcsb
source organism Nicotiana tabacum
total genus 26
structure length 123
sequence length 123
chains with identical sequence T, U, V
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 1990-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 4rubS00
3ZXWB 1IR21 1RBLI 1UPMC 1SVDM 1RLCS 2VDHI 1RCXC 1GK8I 2V63I 1AUSS 1UZHC 2V67I 1BWVS 3AXMS 4F0HB 4F0KB 4F0MB 1RCOC 4RUBS 2V68I 1RLDS 3AXKS 1RBOC 2YBVB 4HHHS 1EJ7S 1WDDS 2VDII 2V69I 1BXNI 8RUCI 1UZDC 1UW9C 1IWAB 1RSCI 1UWAC 1AA1C 4MKVS 1RXOC 3RUBS 1UPPI 2V6AI 1IR1S
chains in the Genus database with same CATH superfamily
3ZXWB 1IR21 1RBLI 1DWUA 1UPMC 1CJSA 1SVDM 4DFCB 1RLCS 2VDHI 1RCXC 1GK8I 3UMYA 5DM70 1AD2A 4LQ4A 2V63I 1AUSS 3RUBS 1UZHC 2V67I 1BWVS 3AXMS 4F0HB 3U4MA 4REOA 4F0KB 3U56A 4F0MB 3TG8A 1RCOC 4RUBS 3ZQJA 2V68I 1RLDS 3AXKS 2HW8A 1MZPA 1RBOC 2YBVB 1U63A 4HHHS 4QG3A 4QGBA 1EJ7S 1WDDS 2VDII 1RXOC 4QVIA 2V69I 3FPNA 1BXNI 2FHZA 4F9TA 8RUCI 1UZDC 1UW9C 1IWAB 1RSCI 1UWAC 1AA1C 2DFXI 4MKVS 1ZHOA 5DM60 1I2AA 3QOYA 1UPPI 2V6AI 1IR1S
chains in the Genus database with same CATH topology
3ZXWB 1IR21 1RBLI 1UPMC 1SVDM 1RLCS 2VDHI 1RCXC 1GK8I 2V63I 1AUSS 1UZHC 2V67I 1BWVS 3AXMS 4F0HB 4F0KB 4F0MB 1RCOC 4RUBS 2V68I 1RLDS 3AXKS 1RBOC 2YBVB 4HHHS 1EJ7S 1WDDS 2VDII 2V69I 1BXNI 8RUCI 1UZDC 1UW9C 1IWAB 1RSCI 1UWAC 1AA1C 4MKVS 1RXOC 3RUBS 1UPPI 2V6AI 1IR1S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZXW B;  1IR2 1;  1RBL I;  1UPM C;  1SVD M;  1RLC S;  2VDH I;  1RCX C;  1GK8 I;  2V63 I;  1AUS S;  1UZH C;  2V67 I;  1BWV S;  3AXM S;  4F0H B;  4F0K B;  4F0M B;  1RCO C;  4RUB S;  2V68 I;  1RLD S;  3AXK S;  1RBO C;  2YBV B;  4HHH S;  1EJ7 S;  1WDD S;  2VDI I;  2V69 I;  1BXN I;  8RUC I;  1UZD C;  1UW9 C;  1IWA B;  1RSC I;  1UWA C;  1AA1 C;  4MKV S;  1RXO C;  3RUB S;  1UPP I;  2V6A I;  1IR1 S; 
#chains in the Genus database with same CATH topology
 3ZXW B;  1IR2 1;  1RBL I;  1DWU A;  1UPM C;  1CJS A;  1SVD M;  4DFC B;  1RLC S;  2VDH I;  1RCX C;  1GK8 I;  3UMY A;  5DM7 0;  1AD2 A;  4LQ4 A;  2V63 I;  1AUS S;  3RUB S;  1UZH C;  2V67 I;  1BWV S;  3AXM S;  4F0H B;  3U4M A;  4REO A;  4F0K B;  3U56 A;  4F0M B;  3TG8 A;  1RCO C;  4RUB S;  3ZQJ A;  2V68 I;  1RLD S;  3AXK S;  2HW8 A;  1MZP A;  1RBO C;  2YBV B;  1U63 A;  4HHH S;  4QG3 A;  4QGB A;  1EJ7 S;  1WDD S;  2VDI I;  1RXO C;  4QVI A;  2V69 I;  3FPN A;  1BXN I;  2FHZ A;  4F9T A;  8RUC I;  1UZD C;  1UW9 C;  1IWA B;  1RSC I;  1UWA C;  1AA1 C;  2DFX I;  4MKV S;  1ZHO A;  5DM6 0;  1I2A A;  3QOY A;  1UPP I;  2V6A I;  1IR1 S; 
#chains in the Genus database with same CATH homology
 3ZXW B;  1IR2 1;  1RBL I;  1UPM C;  1SVD M;  1RLC S;  2VDH I;  1RCX C;  1GK8 I;  2V63 I;  1AUS S;  1UZH C;  2V67 I;  1BWV S;  3AXM S;  4F0H B;  4F0K B;  4F0M B;  1RCO C;  4RUB S;  2V68 I;  1RLD S;  3AXK S;  1RBO C;  2YBV B;  4HHH S;  1EJ7 S;  1WDD S;  2VDI I;  2V69 I;  1BXN I;  8RUC I;  1UZD C;  1UW9 C;  1IWA B;  1RSC I;  1UWA C;  1AA1 C;  4MKV S;  1RXO C;  3RUB S;  1UPP I;  2V6A I;  1IR1 S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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