4TQOA

The crystal structure of methanol dehydrogenase from methylococcus capsulatus (bath)
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
573
structure length
573
Chain Sequence
NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Methanol dehydrogenase protein, large subunit
publication title Structure and Protein-Protein Interactions of Methanol Dehydrogenase from Methylococcus capsulatus (Bath).
pubmed doi rcsb
total genus 176
structure length 573
sequence length 573
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2014-06-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01011 PQQ PQQ enzyme repeat
A PF13360 PQQ_2 PQQ-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 4tqoA00
1KV9A 4MAEA 2AD7A 2D0VA 2AD8A 4MH1A 2AD6A 1W6SA 1H4IA 4TQOA 1H4JA 4CVBA 1YIQA 1LRWA 1KB0A 1FLGA 1G72A 4CVCA 4AAHA
chains in the Genus database with same CATH superfamily
4MAEA 1AOQA 3D4LA 3O9VA 3VJKA 3F8SA 2QT9A 2GBFA 4DSAA 1W6SA 1J2EA 4JH0A 1HJ4A 1R9MA 2AJ8A 3G0DA 2Z3ZA 3CCCA 3G0BA 2Z3WA 3KWJA 4N8DA 1QKSA 2AJBA 1AOFA 2QJRA 3C43A 5J3JA 2D5LA 3G0CA 3WQHA 2OQIA 2EEPA 5ISMA 1FLGA 4J3JA 3Q8WA 5T4HA 1TKRA 1G72A 3O95A 4QZVA 2JIDA 1NU6A 1HJ3A 4Q1VA 3CCBA 3C45A 4KR0A 2RGUA 2RIPA 1H4IA 1PFQA 5I7UA 4TQOA 1GQ1A 3HABA 5T4BA 1H4JA 1N1MA 4DTCA 1YIQA 4N8EA 2IIVA 2AJLI 2GBCA 1H9YA 1DY7A 2BUAA 2GBGA 1HZUA 3QBJA 1R9NA 4LKOA 2I3ZA 1E2RA 5T4FA 1WCYA 1NNOA 2AD7A 3H0CA 2QTBA 2D0VA 1N50A 1BL9A 2AD8A 2BUCA 2G5PA 2OLEA 4DSZA 1Z68A 2ONCA 5LLSA 2IITA 1NIRA 4PV7A 2QKYA 2BUBA 1ORWA 2OAGA 1HZVA 2FJPA 2I78A 4CVBA 4A5SA 1LRWA 1AOMA 2AJDA 1HJ5A 2OAEA 1XFDA 1H9XA 1KB0A 2OQVA 2G63A 1HCMA 1TK3A 2DCMA 2BGNA 3NOXA 3Q0TA 1KV9A 3EIOA 2HHAA 3G0GA 2OPHA 5KBYA 1GJQA 4MH1A 2QOEA 1NU8A 1U8EA 2AD6A 2I03A 1N90A 5T4EA 3OPMA 2ECFA 2BGRA 3VJLA 3KWFA 3BJMA 1ORVA 1W1IA 1N15A 2G5TA 2P8SA 4WJLA 4PNZA 3OC0A 4FFWA 1X70A 3SX4A 3W2TA 2OGZA 3HACA 4L72A 4FFVA 1RWQA 2AJCA 2GBIA 4G1FA 3SWWA 4CVCA 3VJMA 4AAHA
chains in the Genus database with same CATH topology
1KV9A 4MAEA 2AD7A 2D0VA 2AD8A 4MH1A 2AD6A 1W6SA 1H4IA 4TQOA 1H4JA 4CVBA 1YIQA 1LRWA 1KB0A 1FLGA 1G72A 4CVCA 4AAHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KV9 A;  4MAE A;  2AD7 A;  2D0V A;  2AD8 A;  4MH1 A;  2AD6 A;  1W6S A;  1H4I A;  4TQO A;  1H4J A;  4CVB A;  1YIQ A;  1LRW A;  1KB0 A;  1FLG A;  1G72 A;  4CVC A;  4AAH A; 
#chains in the Genus database with same CATH topology
 4MAE A;  1AOQ A;  3D4L A;  3O9V A;  3VJK A;  3F8S A;  2QT9 A;  2GBF A;  4DSA A;  1W6S A;  1J2E A;  4JH0 A;  1HJ4 A;  1R9M A;  2AJ8 A;  3G0D A;  2Z3Z A;  3CCC A;  3G0B A;  2Z3W A;  3KWJ A;  4N8D A;  1QKS A;  2AJB A;  1AOF A;  2QJR A;  3C43 A;  5J3J A;  2D5L A;  3G0C A;  3WQH A;  2OQI A;  2EEP A;  5ISM A;  1FLG A;  4J3J A;  3Q8W A;  5T4H A;  1TKR A;  1G72 A;  3O95 A;  4QZV A;  2JID A;  1NU6 A;  1HJ3 A;  4Q1V A;  3CCB A;  3C45 A;  4KR0 A;  2RGU A;  2RIP A;  1H4I A;  1PFQ A;  5I7U A;  4TQO A;  1GQ1 A;  3HAB A;  5T4B A;  1H4J A;  1N1M A;  4DTC A;  1YIQ A;  4N8E A;  2IIV A;  2AJL I;  2GBC A;  1H9Y A;  1DY7 A;  2BUA A;  2GBG A;  1HZU A;  3QBJ A;  1R9N A;  4LKO A;  2I3Z A;  1E2R A;  5T4F A;  1WCY A;  1NNO A;  2AD7 A;  3H0C A;  2QTB A;  2D0V A;  1N50 A;  1BL9 A;  2AD8 A;  2BUC A;  2G5P A;  2OLE A;  4DSZ A;  1Z68 A;  2ONC A;  5LLS A;  2IIT A;  1NIR A;  4PV7 A;  2QKY A;  2BUB A;  1ORW A;  2OAG A;  1HZV A;  2FJP A;  2I78 A;  4CVB A;  4A5S A;  1LRW A;  1AOM A;  2AJD A;  1HJ5 A;  2OAE A;  1XFD A;  1H9X A;  1KB0 A;  2OQV A;  2G63 A;  1HCM A;  1TK3 A;  2DCM A;  2BGN A;  3NOX A;  3Q0T A;  1KV9 A;  3EIO A;  2HHA A;  3G0G A;  2OPH A;  5KBY A;  1GJQ A;  4MH1 A;  2QOE A;  1NU8 A;  1U8E A;  2AD6 A;  2I03 A;  1N90 A;  5T4E A;  3OPM A;  2ECF A;  2BGR A;  3VJL A;  3KWF A;  3BJM A;  1ORV A;  1W1I A;  1N15 A;  2G5T A;  2P8S A;  4WJL A;  4PNZ A;  3OC0 A;  4FFW A;  1X70 A;  3SX4 A;  3W2T A;  2OGZ A;  3HAC A;  4L72 A;  4FFV A;  1RWQ A;  2AJC A;  2GBI A;  4G1F A;  3SWW A;  4CVC A;  3VJM A;  4AAH A; 
#chains in the Genus database with same CATH homology
 1KV9 A;  4MAE A;  2AD7 A;  2D0V A;  2AD8 A;  4MH1 A;  2AD6 A;  1W6S A;  1H4I A;  4TQO A;  1H4J A;  4CVB A;  1YIQ A;  1LRW A;  1KB0 A;  1FLG A;  1G72 A;  4CVC A;  4AAH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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