4UMLA

Crystal structure of ganglioside induced differentiation associated protein 2 (gdap2) macro domain
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
221
structure length
201
Chain Sequence
PSQFVDVDTLPSWGDSRSPFLYNKDVNGKVVLWKGDVALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLKGCRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGYPLEDATHIALRTVRRFLEIHGETIEKVVFAVSDLEEGTYQKLLPLYFPRSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords GANGLIOSIDE-INDUCED DIFFERENTIATION-ASSOCIATED PROTEIN 2
publication title Structure of Gdap2
rcsb
source organism Homo sapiens
total genus 68
structure length 201
sequence length 221
ec nomenclature
pdb deposition date 2014-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 4umlA00
4GVWA 5HOLA 3SIHA 3SIIA 4J5RA 3EKEA 3GQOA 3JZTA 1LANA 3EW5A 5DUSA 5CBMA 1HJZA 2L8RA 5CB3A 4KSIA 4ETKA 3EWPA 3IIFA 1TXZA 2FAVA 3SIGA 4JVVA 3Q6ZA 4ABLA 1BPNA 3GPOA 3IJ3A 3EWRA 3PEIA 4R7MA 4ZX8A 5AILA 3GQEA 3JRUA 1TY8A 2XD7A 5CMSA 4IQYA 5D8NA 4ETJA 1VHUA 2FG1A 4GUAA 3VFQA 4ZI6A 3H8GA 4GVVA 3H8EA 3H8FA 3GPQA 2DX6A 4D86A 1LAPA 2ACFA 1LCPA 1GYTA 5FSXA 4ZY0A 5FSVA 4ESSA 2FXKA 4JLLA 2AFCA 4JCAA 3SIJA 3KQZA 4ZY1A 1LAMA 3EJFA 2VRIA 3ETIA 2EWBA 4J5SA 3IIDA 4ZY2A 1NJRA 3V45A 4ZX9A 4X2TA 5CB5A 3KR5A 4KYBA 3V2BA 4J5QA 1ZR3A 4UMLA 3EWOA 3KR4A 3GPGA 4R76A 5FSYA 4ABKA 2LGRA 4K0CA 4ZYQA 1BPMA 2EEEA 4JGKA 1BLLE 1YD9A 3T8WA 2BFQA 3KQXA 5HIHA 1ZR5A 4R6TA 5E3BA 4K3NA 3EWQA 2BFRA 2X47A 5FSUA 2J9AA 5FSZA 4TU0A 4J4ZA 3EJGA 1SPVA 3Q71A 3KZWA
chains in the Genus database with same CATH superfamily
4GVWA 2W2GA 5HOLA 3SIHA 3SIIA 4J5RA 3EKEA 2WCTA 2JZFA 3GQOA 3JZTA 1LANA 3EW5A 5DUSA 5CBMA 1HJZA 2L8RA 5CB3A 4KSIA 4ETKA 3EWPA 3IIFA 1TXZA 2FAVA 3SIGA 4JVVA 3Q6ZA 4ABLA 1BPNA 3GPOA 3IJ3A 2RNKA 2JZDA 3EWRA 3PEIA 4R7MA 4ZX8A 5AILA 3GQEA 3JRUA 1TY8A 2XD7A 5CMSA 4IQYA 2JZEA 5D8NA 4ETJA 1VHUA 2FG1A 4GUAA 3VFQA 4ZI6A 3H8GA 4GVVA 3H8EA 3H8FA 3GPQA 2DX6A 4D86A 2KQVA 1LAPA 2ACFA 1LCPA 1GYTA 5FSXA 4ZY0A 5FSVA 4ESSA 2FXKA 4JLLA 2AFCA 4JCAA 3SIJA 3KQZA 4ZY1A 1LAMA 3EJFA 2VRIA 3ETIA 2EWBA 4J5SA 3IIDA 4ZY2A 1NJRA 3V45A 4ZX9A 4X2TA 5CB5A 3KR5A 4KYBA 3V2BA 4J5QA 1ZR3A 4UMLA 3EWOA 3KR4A 3GPGA 4R76A 5FSYA 4ABKA 2LGRA 4K0CA 4ZYQA 1BPMA 2EEEA 4JGKA 1BLLE 1YD9A 3T8WA 2BFQA 3KQXA 5HIHA 1ZR5A 4R6TA 5E3BA 4K3NA 3EWQA 2BFRA 2X47A 5FSUA 2J9AA 5FSZA 4TU0A 4J4ZA 3EJGA 1SPVA 3Q71A 3KZWA
chains in the Genus database with same CATH topology
4GVWA 5HOLA 3SIHA 3SIIA 4J5RA 3EKEA 3GQOA 3JZTA 1LANA 3EW5A 5DUSA 5CBMA 1HJZA 2L8RA 5CB3A 4KSIA 4ETKA 3EWPA 3IIFA 1TXZA 2FAVA 3SIGA 4JVVA 3Q6ZA 4ABLA 1BPNA 3GPOA 3IJ3A 3EWRA 3PEIA 4R7MA 4ZX8A 5AILA 3GQEA 3JRUA 1TY8A 2XD7A 5CMSA 4IQYA 5D8NA 4ETJA 1VHUA 2FG1A 4GUAA 3VFQA 4ZI6A 3H8GA 4GVVA 3H8EA 3H8FA 3GPQA 2DX6A 4D86A 1LAPA 2ACFA 1LCPA 1GYTA 5FSXA 4ZY0A 5FSVA 4ESSA 2FXKA 4JLLA 2AFCA 4JCAA 3SIJA 3KQZA 4ZY1A 1LAMA 3EJFA 2VRIA 3ETIA 2EWBA 4J5SA 3IIDA 4ZY2A 1NJRA 3V45A 4ZX9A 4X2TA 5CB5A 3KR5A 4KYBA 3V2BA 4J5QA 1ZR3A 4UMLA 3EWOA 3KR4A 3GPGA 4R76A 5FSYA 4ABKA 2LGRA 4K0CA 4ZYQA 1BPMA 2EEEA 4JGKA 1BLLE 1YD9A 3T8WA 2BFQA 3KQXA 5HIHA 1ZR5A 4R6TA 5E3BA 4K3NA 3EWQA 2BFRA 2X47A 5FSUA 2J9AA 5FSZA 4TU0A 4J4ZA 3EJGA 1SPVA 3Q71A 3KZWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GVW A;  5HOL A;  3SIH A;  3SII A;  4J5R A;  3EKE A;  3GQO A;  3JZT A;  1LAN A;  3EW5 A;  5DUS A;  5CBM A;  1HJZ A;  2L8R A;  5CB3 A;  4KSI A;  4ETK A;  3EWP A;  3IIF A;  1TXZ A;  2FAV A;  3SIG A;  4JVV A;  3Q6Z A;  4ABL A;  1BPN A;  3GPO A;  3IJ3 A;  3EWR A;  3PEI A;  4R7M A;  4ZX8 A;  5AIL A;  3GQE A;  3JRU A;  1TY8 A;  2XD7 A;  5CMS A;  4IQY A;  5D8N A;  4ETJ A;  1VHU A;  2FG1 A;  4GUA A;  3VFQ A;  4ZI6 A;  3H8G A;  4GVV A;  3H8E A;  3H8F A;  3GPQ A;  2DX6 A;  4D86 A;  1LAP A;  2ACF A;  1LCP A;  1GYT A;  5FSX A;  4ZY0 A;  5FSV A;  4ESS A;  2FXK A;  4JLL A;  2AFC A;  4JCA A;  3SIJ A;  3KQZ A;  4ZY1 A;  1LAM A;  3EJF A;  2VRI A;  3ETI A;  2EWB A;  4J5S A;  3IID A;  4ZY2 A;  1NJR A;  3V45 A;  4ZX9 A;  4X2T A;  5CB5 A;  3KR5 A;  4KYB A;  3V2B A;  4J5Q A;  1ZR3 A;  4UML A;  3EWO A;  3KR4 A;  3GPG A;  4R76 A;  5FSY A;  4ABK A;  2LGR A;  4K0C A;  4ZYQ A;  1BPM A;  2EEE A;  4JGK A;  1BLL E;  1YD9 A;  3T8W A;  2BFQ A;  3KQX A;  5HIH A;  1ZR5 A;  4R6T A;  5E3B A;  4K3N A;  3EWQ A;  2BFR A;  2X47 A;  5FSU A;  2J9A A;  5FSZ A;  4TU0 A;  4J4Z A;  3EJG A;  1SPV A;  3Q71 A;  3KZW A; 
#chains in the Genus database with same CATH topology
 4GVW A;  2W2G A;  5HOL A;  3SIH A;  3SII A;  4J5R A;  3EKE A;  2WCT A;  2JZF A;  3GQO A;  3JZT A;  1LAN A;  3EW5 A;  5DUS A;  5CBM A;  1HJZ A;  2L8R A;  5CB3 A;  4KSI A;  4ETK A;  3EWP A;  3IIF A;  1TXZ A;  2FAV A;  3SIG A;  4JVV A;  3Q6Z A;  4ABL A;  1BPN A;  3GPO A;  3IJ3 A;  2RNK A;  2JZD A;  3EWR A;  3PEI A;  4R7M A;  4ZX8 A;  5AIL A;  3GQE A;  3JRU A;  1TY8 A;  2XD7 A;  5CMS A;  4IQY A;  2JZE A;  5D8N A;  4ETJ A;  1VHU A;  2FG1 A;  4GUA A;  3VFQ A;  4ZI6 A;  3H8G A;  4GVV A;  3H8E A;  3H8F A;  3GPQ A;  2DX6 A;  4D86 A;  2KQV A;  1LAP A;  2ACF A;  1LCP A;  1GYT A;  5FSX A;  4ZY0 A;  5FSV A;  4ESS A;  2FXK A;  4JLL A;  2AFC A;  4JCA A;  3SIJ A;  3KQZ A;  4ZY1 A;  1LAM A;  3EJF A;  2VRI A;  3ETI A;  2EWB A;  4J5S A;  3IID A;  4ZY2 A;  1NJR A;  3V45 A;  4ZX9 A;  4X2T A;  5CB5 A;  3KR5 A;  4KYB A;  3V2B A;  4J5Q A;  1ZR3 A;  4UML A;  3EWO A;  3KR4 A;  3GPG A;  4R76 A;  5FSY A;  4ABK A;  2LGR A;  4K0C A;  4ZYQ A;  1BPM A;  2EEE A;  4JGK A;  1BLL E;  1YD9 A;  3T8W A;  2BFQ A;  3KQX A;  5HIH A;  1ZR5 A;  4R6T A;  5E3B A;  4K3N A;  3EWQ A;  2BFR A;  2X47 A;  5FSU A;  2J9A A;  5FSZ A;  4TU0 A;  4J4Z A;  3EJG A;  1SPV A;  3Q71 A;  3KZW A; 
#chains in the Genus database with same CATH homology
 4GVW A;  5HOL A;  3SIH A;  3SII A;  4J5R A;  3EKE A;  3GQO A;  3JZT A;  1LAN A;  3EW5 A;  5DUS A;  5CBM A;  1HJZ A;  2L8R A;  5CB3 A;  4KSI A;  4ETK A;  3EWP A;  3IIF A;  1TXZ A;  2FAV A;  3SIG A;  4JVV A;  3Q6Z A;  4ABL A;  1BPN A;  3GPO A;  3IJ3 A;  3EWR A;  3PEI A;  4R7M A;  4ZX8 A;  5AIL A;  3GQE A;  3JRU A;  1TY8 A;  2XD7 A;  5CMS A;  4IQY A;  5D8N A;  4ETJ A;  1VHU A;  2FG1 A;  4GUA A;  3VFQ A;  4ZI6 A;  3H8G A;  4GVV A;  3H8E A;  3H8F A;  3GPQ A;  2DX6 A;  4D86 A;  1LAP A;  2ACF A;  1LCP A;  1GYT A;  5FSX A;  4ZY0 A;  5FSV A;  4ESS A;  2FXK A;  4JLL A;  2AFC A;  4JCA A;  3SIJ A;  3KQZ A;  4ZY1 A;  1LAM A;  3EJF A;  2VRI A;  3ETI A;  2EWB A;  4J5S A;  3IID A;  4ZY2 A;  1NJR A;  3V45 A;  4ZX9 A;  4X2T A;  5CB5 A;  3KR5 A;  4KYB A;  3V2B A;  4J5Q A;  1ZR3 A;  4UML A;  3EWO A;  3KR4 A;  3GPG A;  4R76 A;  5FSY A;  4ABK A;  2LGR A;  4K0C A;  4ZYQ A;  1BPM A;  2EEE A;  4JGK A;  1BLL E;  1YD9 A;  3T8W A;  2BFQ A;  3KQX A;  5HIH A;  1ZR5 A;  4R6T A;  5E3B A;  4K3N A;  3EWQ A;  2BFR A;  2X47 A;  5FSU A;  2J9A A;  5FSZ A;  4TU0 A;  4J4Z A;  3EJG A;  1SPV A;  3Q71 A;  3KZW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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