4UZWA

High-resolution nmr structures of the domains of saccharomyces cerevisiae tho1
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
50
structure length
50
Chain Sequence
SADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKGESEVSPQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords PROTEIN THO1
publication title High-Resolution NMR Structures of the Domains of Saccharomyces Cerevisiae Tho1.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 12
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2014-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02037 SAP SAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.30 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 SAP domain 4uzwA00
2KVUA 2KVEA 2KVDA 1V66A 1ZBHA 1H1JS 1JEQA 2KW9A 2WQGA 4UZWA 2RNOA 2JVWA 1JJRA 4BITA 2RNNA
chains in the Genus database with same CATH superfamily
3FLGA 2DK4A 2KVEA 2HJQA 3QKJA 1V66A 1ZS9A 2KW9A 1A8VA 3LLRA 3L0OA 2ODCI 1GKUB 1JEQA 1KHCA 2G80A 2QNCA 2QNFA 1EN7A 1GJJA 1A63A 2JVWA 1A62A 1H9FA 2KVUA 1YNSA 1Y02A 2KFVA 2WQGA 5CIUA 1JEIA 1E7DA 1H9EA 1ZBHA 2MPHA 1JJRA 2RNNA 2KVDA 1E7LA 1H1JS 2LC3A 2LD7A 4UZWA 1GL9B 2W51A 2RNOA 2ODGC 4BITA 2A8VA
chains in the Genus database with same CATH topology
2KVUA 2KVEA 2KVDA 1V66A 1ZBHA 1H1JS 1JEQA 2KW9A 2WQGA 4UZWA 2RNOA 2JVWA 1JJRA 4BITA 2RNNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KVU A;  2KVE A;  2KVD A;  1V66 A;  1ZBH A;  1H1J S;  1JEQ A;  2KW9 A;  2WQG A;  4UZW A;  2RNO A;  2JVW A;  1JJR A;  4BIT A;  2RNN A; 
#chains in the Genus database with same CATH topology
 3FLG A;  2DK4 A;  2KVE A;  2HJQ A;  3QKJ A;  1V66 A;  1ZS9 A;  2KW9 A;  1A8V A;  3LLR A;  3L0O A;  2ODC I;  1GKU B;  1JEQ A;  1KHC A;  2G80 A;  2QNC A;  2QNF A;  1EN7 A;  1GJJ A;  1A63 A;  2JVW A;  1A62 A;  1H9F A;  2KVU A;  1YNS A;  1Y02 A;  2KFV A;  2WQG A;  5CIU A;  1JEI A;  1E7D A;  1H9E A;  1ZBH A;  2MPH A;  1JJR A;  2RNN A;  2KVD A;  1E7L A;  1H1J S;  2LC3 A;  2LD7 A;  4UZW A;  1GL9 B;  2W51 A;  2RNO A;  2ODG C;  4BIT A;  2A8V A; 
#chains in the Genus database with same CATH homology
 2KVU A;  2KVE A;  2KVD A;  1V66 A;  1ZBH A;  1H1J S;  1JEQ A;  2KW9 A;  2WQG A;  4UZW A;  2RNO A;  2JVW A;  1JJR A;  4BIT A;  2RNN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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