4Y0CA

The structure of arabidopsis clpt2
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
166
structure length
158
Chain Sequence
SLPTANKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELESFASESGFLDE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Clp protease-related protein At4g12060, chloroplastic
publication title Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 52
structure length 158
sequence length 166
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 4y0cA00
5HBNA 2Y1RA 5GUIA 4HH6A 4Y0BA 1R6QA 4IODA 3WDDA 1KSFX 3WDBA 4P15A 4Y0CA 1MBXA 1K6KA 4UQWA 3FESA 1QVRA 3ZRIA 1MBUA 3PXGA 1R6BX 4IRFA 1LZWB 3WDCA 2K77A 1MBVA 1MG9B 4HH5A 1KHYA 3WDEA 3FH2A 1R6OA 2Y1QA 1R6CX 3ZRJA
chains in the Genus database with same CATH superfamily
5HBNA 2Y1RA 5GUIA 4HH6A 4Y0BA 1R6QA 4IODA 3WDDA 1KSFX 3WDBA 4P15A 4Y0CA 1MBXA 1K6KA 4UQWA 3FESA 1QVRA 3ZRIA 1MBUA 3PXGA 1R6BX 4IRFA 1LZWB 3WDCA 2K77A 1MBVA 1MG9B 4HH5A 1KHYA 3WDEA 3FH2A 1R6OA 2Y1QA 1R6CX 3ZRJA
chains in the Genus database with same CATH topology
5HBNA 2Y1RA 5GUIA 4HH6A 4Y0BA 1R6QA 4IODA 3WDDA 1KSFX 3WDBA 4P15A 4Y0CA 1MBXA 1K6KA 4UQWA 3FESA 1QVRA 3ZRIA 1MBUA 3PXGA 1R6BX 4IRFA 1LZWB 3WDCA 2K77A 1MBVA 1MG9B 4HH5A 1KHYA 3WDEA 3FH2A 1R6OA 2Y1QA 1R6CX 3ZRJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HBN A;  2Y1R A;  5GUI A;  4HH6 A;  4Y0B A;  1R6Q A;  4IOD A;  3WDD A;  1KSF X;  3WDB A;  4P15 A;  4Y0C A;  1MBX A;  1K6K A;  4UQW A;  3FES A;  1QVR A;  3ZRI A;  1MBU A;  3PXG A;  1R6B X;  4IRF A;  1LZW B;  3WDC A;  2K77 A;  1MBV A;  1MG9 B;  4HH5 A;  1KHY A;  3WDE A;  3FH2 A;  1R6O A;  2Y1Q A;  1R6C X;  3ZRJ A; 
#chains in the Genus database with same CATH topology
 5HBN A;  2Y1R A;  5GUI A;  4HH6 A;  4Y0B A;  1R6Q A;  4IOD A;  3WDD A;  1KSF X;  3WDB A;  4P15 A;  4Y0C A;  1MBX A;  1K6K A;  4UQW A;  3FES A;  1QVR A;  3ZRI A;  1MBU A;  3PXG A;  1R6B X;  4IRF A;  1LZW B;  3WDC A;  2K77 A;  1MBV A;  1MG9 B;  4HH5 A;  1KHY A;  3WDE A;  3FH2 A;  1R6O A;  2Y1Q A;  1R6C X;  3ZRJ A; 
#chains in the Genus database with same CATH homology
 5HBN A;  2Y1R A;  5GUI A;  4HH6 A;  4Y0B A;  1R6Q A;  4IOD A;  3WDD A;  1KSF X;  3WDB A;  4P15 A;  4Y0C A;  1MBX A;  1K6K A;  4UQW A;  3FES A;  1QVR A;  3ZRI A;  1MBU A;  3PXG A;  1R6B X;  4IRF A;  1LZW B;  3WDC A;  2K77 A;  1MBV A;  1MG9 B;  4HH5 A;  1KHY A;  3WDE A;  3FH2 A;  1R6O A;  2Y1Q A;  1R6C X;  3ZRJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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