4ZBWA

Crystal structure of death effector domain of caspase8 in homo sapiens
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
183
structure length
183
Chain Sequence
DFSRNLYDIGEQLDSEDLASLKFLSLDYIPQRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELLFRINRLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRSFKALLQEEDSKCKLDDDMNLLDIFIEMEKRVILGEGKLDILKRVCAQINKSLLKIINDYEEFSKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Caspase-8
publication title Crystal structure of the death effector domains of caspase-8
pubmed doi rcsb
source organism Homo sapiens
total genus 66
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature ec 3.4.22.61: Caspase-8.
pdb deposition date 2015-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01335 DED Death effector domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4zbwA01
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4zbwA02
4NQKA 4P4HI 4O6XA 4P4HA 4O9FA 3LQRA 3MOPA 3YGSC 2A5YB 2N7ZA 2YQFA 1UCPA 4DWNA 2F1SA 2N97A 4N1LA 4EWIA 4ZBWA 2OF5H 4LWDA 1A1WA 3LQQA 2M5VA 2MS8A 2N83A 3MOPG 2NZ7A 2MS7A 2MPCA 1DDFA 2BBZA 2MB9A 3CL3A 2LWEA 1WXPA 4D8OA 3J6JA 4UZ0A 2DBHA 2KN6A 2MN4A 2A9IA 4IZ5E 3MOPK 2DBFA 1DGNA 2DBDA 2OF5A 4F44A 2O71A 2YU0A 4F42A 1YGOA 4N1KA 1ICHA 4RHWA 3QF2A 1E41A 1FADA 2N00A 4JQWA 1NGRA 2L6AA 2NAQA 1N3KA 2IB1A 4M9SA 4A2WA 3CRDA 4JUPA 4FH0A 2DBGA 2D96A 1CY5A 2KM6A 4IZ7B 2N80A 2VGQA 2YGSA 4O9LA 4N1JA 1WH4A 4E9MA 2BBRA 3J63A 2YVIA 1D2ZB 3KATA 2GF5A 2L9MA 1D2ZA 2NSNA 4IZAB 2HM2Q 2G7RA 1CWWA 4O7QA 4M9XA 4A2QA 1E3YA 2DO9A 4I16A 3EZQB 4M9ZA 1Z6TA 2B1WA 3EZQA 3YGSP 1C15A 2LS7A 1A1ZA 2P1HA 2N1FA 2LWDA 4QOBA 3T6PA 4RHWE 1PN5A 1WMGA
chains in the Genus database with same CATH superfamily
4NQKA 4P4HI 4O6XA 4P4HA 4O9FA 3LQRA 3MOPA 3YGSC 2A5YB 2N7ZA 2YQFA 1UCPA 4DWNA 2F1SA 2N97A 4N1LA 4EWIA 4ZBWA 2OF5H 4LWDA 1A1WA 3LQQA 2M5VA 2MS8A 2N83A 3MOPG 2NZ7A 2MS7A 2MJMA 2MPCA 1DDFA 2BBZA 2MB9A 3CL3A 2LWEA 1WXPA 2XV9A 4D8OA 3J6JA 4UZ0A 2DBHA 2KN6A 2MN4A 2A9IA 4IZ5E 3MOPK 2DBFA 1DGNA 2DBDA 2OF5A 4F44A 2O71A 2YU0A 4F42A 1YGOA 4N1KA 1ICHA 4RHWA 3QF2A 1E41A 1FADA 2N00A 4JQWA 1NGRA 2L6AA 2NAQA 1N3KA 2IB1A 4M9SA 4A2WA 3CRDA 4JUPA 4FH0A 2DBGA 2D96A 1CY5A 2KM6A 4IZ7B 2N80A 2VGQA 2YGSA 4O9LA 4N1JA 1WH4A 4E9MA 2BBRA 3J63A 2YVIA 1D2ZB 3KATA 2GF5A 2L9MA 1D2ZA 2NSNA 4IZAB 2HM2Q 2G7RA 1CWWA 4O7QA 4M9XA 4A2QA 1E3YA 2DO9A 4I16A 3EZQB 4M9ZA 1Z6TA 2B1WA 3EZQA 3YGSP 1C15A 2LS7A 1A1ZA 2P1HA 2N1FA 2LWDA 4QOBA 3T6PA 4RHWE 1PN5A 1WMGA
chains in the Genus database with same CATH topology
4NQKA 4P4HI 4O6XA 4P4HA 4O9FA 3LQRA 3MOPA 3YGSC 2A5YB 2N7ZA 2YQFA 1UCPA 4DWNA 2F1SA 2N97A 4N1LA 4EWIA 4ZBWA 2OF5H 4LWDA 1A1WA 3LQQA 2M5VA 2MS8A 2N83A 3MOPG 2NZ7A 2MS7A 2MJMA 2MPCA 1DDFA 2BBZA 2MB9A 3CL3A 2LWEA 1WXPA 2XV9A 4D8OA 3J6JA 4UZ0A 2DBHA 2KN6A 2MN4A 2A9IA 4IZ5E 3MOPK 2DBFA 1DGNA 2DBDA 2OF5A 4F44A 2O71A 2YU0A 4F42A 1YGOA 4N1KA 1ICHA 4RHWA 3QF2A 1E41A 1FADA 2N00A 4JQWA 1NGRA 2L6AA 2NAQA 1N3KA 2IB1A 4M9SA 4A2WA 3CRDA 4JUPA 4FH0A 2DBGA 2D96A 1CY5A 2KM6A 4IZ7B 2N80A 2VGQA 2YGSA 4O9LA 4N1JA 1WH4A 4E9MA 2BBRA 3J63A 2YVIA 1D2ZB 3KATA 2GF5A 2L9MA 1D2ZA 2NSNA 4IZAB 2HM2Q 2G7RA 1CWWA 4O7QA 4M9XA 4A2QA 1E3YA 2DO9A 4I16A 3EZQB 4M9ZA 1Z6TA 2B1WA 3EZQA 3YGSP 1C15A 2LS7A 1A1ZA 2P1HA 2N1FA 2LWDA 4QOBA 3T6PA 4RHWE 1PN5A 1WMGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NQK A;  4P4H I;  4O6X A;  4P4H A;  4O9F A;  3LQR A;  3MOP A;  3YGS C;  2A5Y B;  2N7Z A;  2YQF A;  1UCP A;  4DWN A;  2F1S A;  2N97 A;  4N1L A;  4EWI A;  4ZBW A;  2OF5 H;  4LWD A;  1A1W A;  3LQQ A;  2M5V A;  2MS8 A;  2N83 A;  3MOP G;  2NZ7 A;  2MS7 A;  2MPC A;  1DDF A;  2BBZ A;  2MB9 A;  3CL3 A;  2LWE A;  1WXP A;  4D8O A;  3J6J A;  4UZ0 A;  2DBH A;  2KN6 A;  2MN4 A;  2A9I A;  4IZ5 E;  3MOP K;  2DBF A;  1DGN A;  2DBD A;  2OF5 A;  4F44 A;  2O71 A;  2YU0 A;  4F42 A;  1YGO A;  4N1K A;  1ICH A;  4RHW A;  3QF2 A;  1E41 A;  1FAD A;  2N00 A;  4JQW A;  1NGR A;  2L6A A;  2NAQ A;  1N3K A;  2IB1 A;  4M9S A;  4A2W A;  3CRD A;  4JUP A;  4FH0 A;  2DBG A;  2D96 A;  1CY5 A;  2KM6 A;  4IZ7 B;  2N80 A;  2VGQ A;  2YGS A;  4O9L A;  4N1J A;  1WH4 A;  4E9M A;  2BBR A;  3J63 A;  2YVI A;  1D2Z B;  3KAT A;  2GF5 A;  2L9M A;  1D2Z A;  2NSN A;  4IZA B;  2HM2 Q;  2G7R A;  1CWW A;  4O7Q A;  4M9X A;  4A2Q A;  1E3Y A;  2DO9 A;  4I16 A;  3EZQ B;  4M9Z A;  1Z6T A;  2B1W A;  3EZQ A;  3YGS P;  1C15 A;  2LS7 A;  1A1Z A;  2P1H A;  2N1F A;  2LWD A;  4QOB A;  3T6P A;  4RHW E;  1PN5 A;  1WMG A; 
#chains in the Genus database with same CATH topology
 4NQK A;  4P4H I;  4O6X A;  4P4H A;  4O9F A;  3LQR A;  3MOP A;  3YGS C;  2A5Y B;  2N7Z A;  2YQF A;  1UCP A;  4DWN A;  2F1S A;  2N97 A;  4N1L A;  4EWI A;  4ZBW A;  2OF5 H;  4LWD A;  1A1W A;  3LQQ A;  2M5V A;  2MS8 A;  2N83 A;  3MOP G;  2NZ7 A;  2MS7 A;  2MJM A;  2MPC A;  1DDF A;  2BBZ A;  2MB9 A;  3CL3 A;  2LWE A;  1WXP A;  2XV9 A;  4D8O A;  3J6J A;  4UZ0 A;  2DBH A;  2KN6 A;  2MN4 A;  2A9I A;  4IZ5 E;  3MOP K;  2DBF A;  1DGN A;  2DBD A;  2OF5 A;  4F44 A;  2O71 A;  2YU0 A;  4F42 A;  1YGO A;  4N1K A;  1ICH A;  4RHW A;  3QF2 A;  1E41 A;  1FAD A;  2N00 A;  4JQW A;  1NGR A;  2L6A A;  2NAQ A;  1N3K A;  2IB1 A;  4M9S A;  4A2W A;  3CRD A;  4JUP A;  4FH0 A;  2DBG A;  2D96 A;  1CY5 A;  2KM6 A;  4IZ7 B;  2N80 A;  2VGQ A;  2YGS A;  4O9L A;  4N1J A;  1WH4 A;  4E9M A;  2BBR A;  3J63 A;  2YVI A;  1D2Z B;  3KAT A;  2GF5 A;  2L9M A;  1D2Z A;  2NSN A;  4IZA B;  2HM2 Q;  2G7R A;  1CWW A;  4O7Q A;  4M9X A;  4A2Q A;  1E3Y A;  2DO9 A;  4I16 A;  3EZQ B;  4M9Z A;  1Z6T A;  2B1W A;  3EZQ A;  3YGS P;  1C15 A;  2LS7 A;  1A1Z A;  2P1H A;  2N1F A;  2LWD A;  4QOB A;  3T6P A;  4RHW E;  1PN5 A;  1WMG A; 
#chains in the Genus database with same CATH homology
 4NQK A;  4P4H I;  4O6X A;  4P4H A;  4O9F A;  3LQR A;  3MOP A;  3YGS C;  2A5Y B;  2N7Z A;  2YQF A;  1UCP A;  4DWN A;  2F1S A;  2N97 A;  4N1L A;  4EWI A;  4ZBW A;  2OF5 H;  4LWD A;  1A1W A;  3LQQ A;  2M5V A;  2MS8 A;  2N83 A;  3MOP G;  2NZ7 A;  2MS7 A;  2MJM A;  2MPC A;  1DDF A;  2BBZ A;  2MB9 A;  3CL3 A;  2LWE A;  1WXP A;  2XV9 A;  4D8O A;  3J6J A;  4UZ0 A;  2DBH A;  2KN6 A;  2MN4 A;  2A9I A;  4IZ5 E;  3MOP K;  2DBF A;  1DGN A;  2DBD A;  2OF5 A;  4F44 A;  2O71 A;  2YU0 A;  4F42 A;  1YGO A;  4N1K A;  1ICH A;  4RHW A;  3QF2 A;  1E41 A;  1FAD A;  2N00 A;  4JQW A;  1NGR A;  2L6A A;  2NAQ A;  1N3K A;  2IB1 A;  4M9S A;  4A2W A;  3CRD A;  4JUP A;  4FH0 A;  2DBG A;  2D96 A;  1CY5 A;  2KM6 A;  4IZ7 B;  2N80 A;  2VGQ A;  2YGS A;  4O9L A;  4N1J A;  1WH4 A;  4E9M A;  2BBR A;  3J63 A;  2YVI A;  1D2Z B;  3KAT A;  2GF5 A;  2L9M A;  1D2Z A;  2NSN A;  4IZA B;  2HM2 Q;  2G7R A;  1CWW A;  4O7Q A;  4M9X A;  4A2Q A;  1E3Y A;  2DO9 A;  4I16 A;  3EZQ B;  4M9Z A;  1Z6T A;  2B1W A;  3EZQ A;  3YGS P;  1C15 A;  2LS7 A;  1A1Z A;  2P1H A;  2N1F A;  2LWD A;  4QOB A;  3T6P A;  4RHW E;  1PN5 A;  1WMG A; 
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