4ZUNA

Crystal structure of acetylpolyamine amidohydrolase from mycoplana ramosa in complex with a thiol inhibitor
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
341
structure length
341
Chain Sequence
MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFDDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Acetylpolyamine aminohydrolase
publication title Design, Synthesis, and Evaluation of Polyamine Deacetylase Inhibitors, and High-Resolution Crystal Structures of Their Complexes with Acetylpolyamine Amidohydrolase.
pubmed doi rcsb
source organism Mycoplana ramosa
total genus 118
structure length 341
sequence length 341
chains with identical sequence B
ec nomenclature ec 3.5.1.48: Acetylspermidine deacetylase.
pdb deposition date 2015-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 4zunA00
5THUA 4RN0A 5G13A 3MENA 1T67A 4ZUQA 3MZ3A 5G0XA 5D1BA 3RQDA 4QA3A 5EEIA 2VQQA 5THSA 1ZZ0A 3Q9FA 5G0IA 3MAXA 5G1AA 5EF8A 3C0YA 4A69A 5DC6A 5DC8A 5G11A 3EWFA 1C3SA 5BWZA 4QA2A 5G1BA 5IX0A 3C0ZA 5A2SA 5G0JA 5EFNA 5EFBD 3SFFA 1C3PA 5EFGA 5EENA 3F0RA 4QA4A 4ZUMA 4RN1A 5FCWA 1VKGA 4QA6A 5EEKA 4LXZA 5D1DA 5ICNB 4ZURA 5EEMA 2VQWG 2V5WA 2V5XA 5LI3A 5THTA 3EZPA 4CBTA 4BKXB 5EF7A 4BZ8A 4QA0A 2GH6A 4BZ9A 3ZNSA 5DC7A 5G12A 5EEFA 4QA5A 3MZ4A 1T64A 5G0YA 4CBYA 1ZZ1A 5DC5A 4BZ7A 5G10A 3MZ6A 5IWGA 3Q9BA 1T69A 2VQVA 5EFJD 3MZ7A 4QA7A 5D1CA 4BZ6A 4ZUNA 4ZUOA 5G0GA 1W22A 4RN2A 5G1CA 3SFHA 3C10A 5THVA 5JI5A 5EFHA 4LY1A 4CQFA 1C3RA 1ZZ3A 5FUEA 3F06A 3ZNRA 3EW8A 3EZTA 2VQOA 3Q9EA 5EFKB 2VCGA 5G17A 5G3WA 2VQJA 3F07A 5G0HA 4BZ5A 4QA1A 3Q9CA 4ZUPA 2VQMA
chains in the Genus database with same CATH superfamily
4MYLA 4RN0A 5G13A 5THUA 3MENA 4Q3TA 5RLAA 1T67A 4ZUQA 3MZ3A 5G0XA 5D1BA 3RQDA 4RHJA 4RHKA 4QA3A 5EEIA 4IXUA 1WVBA 1PQ3A 2PHOA 2VQQA 5THSA 3GMZA 1T5GA 1ZZ0A 3MJLA 3Q9FA 5G0IA 3MAXA 4GSVA 3NIOA 3CEVA 1HQHA 5G1AA 2RLAA 4MXRA 4Q3RA 5EF8A 1D3VA 1WOHA 3TH7A 3C0YA 3NIPA 4IE1A 3THEA 4A69A 1P8MA 4RHIA 1P8NA 5DC6A 5DC8A 4MYKA 5G11A 1RLAA 3EWFA 4MYFA 1T4PA 1C3SA 2EF5A 5BWZA 4IE3A 4QA2A 4DZ4A 1T4RA 5G1BA 4IU0A 4Q42A 5IX0A 3C0ZA 5A2SA 4RHLA 4G3HA 5G0JA 5EFNA 5EFBD 3SFFA 1C3PA 4Q41A 1CEVA 3TF3A 1WVAA 3KV2A 4FCIA 5EFGA 5EENA 3F0RA 3MFWA 4QA4A 4ZUMA 4RN1A 1T4SA 5FCWA 3SJTA 4CEVA 1VKGA 4QA6A 5EEKA 4I06A 2EF4A 1GQ7A 3E6VA 1T4TA 4LXZA 1HQ5A 5D1DA 5ICNB 4ZURA 4Q3QA 2VQWG 2V5WA 5EEMA 2V5XA 3E9BA 5LI3A 5THTA 3RLAA 1P8OA 3EZPA 4Q3UA 3E8ZA 4Q3VA 4CBTA 4BKXB 3M1RA 3DJ8A 5EF7A 4BZ8A 4RHMA 4QA0A 3LP4A 1XFKA 2GH6A 4Q3PA 5HJ9A 3MFVA 3E8QA 4FCKA 4GSMA 4IE2A 2CEVA 4ITYA 4BZ9A 2PLLA 3ZNSA 5DC7A 5G12A 3GN0A 3THHA 3F80A 5EEFA 4QA5A 3MZ4A 4IU5A 1ZPEA 1T64A 5G0YA 3SL1A 4CBYA 2ZAVA 1ZZ1A 1HQXA 4Q3RC 5DC5A 1WOGA 1WOIA 4GWCA 4BZ7A 5G10A 3MZ6A 4HWWA 5IWGA 3Q9BA 2VQVA 1T69A 3NIQA 4RHQA 5EFJD 1P8RA 3MZ7A 3PZLA 4QA7A 5D1CA 5CEVA 4BZ6A 4ZUNA 5HJAA 1ZPGA 3LHLA 1W22A 4IXVA 4MYNA 4Q40A 4IU4A 4ZUOA 5G0GA 3MMRA 4HXQA 1TA1A 4RN2A 3E6KA 5G1CA 3C10A 3SFHA 3SL0A 5THVA 5JI5A 3SKKA 5EFHA 4LY1A 1GQ6A 2EIVA 1TBJA 4CQFA 1C3RA 1ZZ3A 5FUEA 1P8QA 3THJA 1HQFA 4Q3SA 4RLAA 2PHAA 2AEBA 3F06A 1TBHA 4HZEA 3ZNRA 3EW8A 1TBLA 2A0MA 3EZTA 4GWDA 3LP7A 2VQOA 3Q9EA 1P8PA 1T5FA 5EFKB 1R1OA 2VCGA 4GSZA 1P8SA 2VQJA 3F07A 5G0HA 5G3WA 5G17A 4BZ5A 1HQGA 4QA1A 3Q9CA 4ZUPA 2VQMA 4IU1A
chains in the Genus database with same CATH topology
5THUA 4RN0A 5G13A 3MENA 1T67A 4ZUQA 3MZ3A 5G0XA 5D1BA 3RQDA 4QA3A 5EEIA 2VQQA 5THSA 1ZZ0A 3Q9FA 5G0IA 3MAXA 5G1AA 5EF8A 3C0YA 4A69A 5DC6A 5DC8A 5G11A 3EWFA 1C3SA 5BWZA 4QA2A 5G1BA 5IX0A 3C0ZA 5A2SA 5G0JA 5EFNA 5EFBD 3SFFA 1C3PA 5EFGA 5EENA 3F0RA 4QA4A 4ZUMA 4RN1A 5FCWA 1VKGA 4QA6A 5EEKA 4LXZA 5D1DA 5ICNB 4ZURA 5EEMA 2VQWG 2V5WA 2V5XA 5LI3A 5THTA 3EZPA 4CBTA 4BKXB 5EF7A 4BZ8A 4QA0A 2GH6A 4BZ9A 3ZNSA 5DC7A 5G12A 5EEFA 4QA5A 3MZ4A 1T64A 5G0YA 4CBYA 1ZZ1A 5DC5A 4BZ7A 5G10A 3MZ6A 5IWGA 3Q9BA 1T69A 2VQVA 5EFJD 3MZ7A 4QA7A 5D1CA 4BZ6A 4ZUNA 4ZUOA 5G0GA 1W22A 4RN2A 5G1CA 3SFHA 3C10A 5THVA 5JI5A 5EFHA 4LY1A 4CQFA 1C3RA 1ZZ3A 5FUEA 3F06A 3ZNRA 3EW8A 3EZTA 2VQOA 3Q9EA 5EFKB 2VCGA 5G17A 5G3WA 2VQJA 3F07A 5G0HA 4BZ5A 4QA1A 3Q9CA 4ZUPA 2VQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5THU A;  4RN0 A;  5G13 A;  3MEN A;  1T67 A;  4ZUQ A;  3MZ3 A;  5G0X A;  5D1B A;  3RQD A;  4QA3 A;  5EEI A;  2VQQ A;  5THS A;  1ZZ0 A;  3Q9F A;  5G0I A;  3MAX A;  5G1A A;  5EF8 A;  3C0Y A;  4A69 A;  5DC6 A;  5DC8 A;  5G11 A;  3EWF A;  1C3S A;  5BWZ A;  4QA2 A;  5G1B A;  5IX0 A;  3C0Z A;  5A2S A;  5G0J A;  5EFN A;  5EFB D;  3SFF A;  1C3P A;  5EFG A;  5EEN A;  3F0R A;  4QA4 A;  4ZUM A;  4RN1 A;  5FCW A;  1VKG A;  4QA6 A;  5EEK A;  4LXZ A;  5D1D A;  5ICN B;  4ZUR A;  5EEM A;  2VQW G;  2V5W A;  2V5X A;  5LI3 A;  5THT A;  3EZP A;  4CBT A;  4BKX B;  5EF7 A;  4BZ8 A;  4QA0 A;  2GH6 A;  4BZ9 A;  3ZNS A;  5DC7 A;  5G12 A;  5EEF A;  4QA5 A;  3MZ4 A;  1T64 A;  5G0Y A;  4CBY A;  1ZZ1 A;  5DC5 A;  4BZ7 A;  5G10 A;  3MZ6 A;  5IWG A;  3Q9B A;  1T69 A;  2VQV A;  5EFJ D;  3MZ7 A;  4QA7 A;  5D1C A;  4BZ6 A;  4ZUN A;  4ZUO A;  5G0G A;  1W22 A;  4RN2 A;  5G1C A;  3SFH A;  3C10 A;  5THV A;  5JI5 A;  5EFH A;  4LY1 A;  4CQF A;  1C3R A;  1ZZ3 A;  5FUE A;  3F06 A;  3ZNR A;  3EW8 A;  3EZT A;  2VQO A;  3Q9E A;  5EFK B;  2VCG A;  5G17 A;  5G3W A;  2VQJ A;  3F07 A;  5G0H A;  4BZ5 A;  4QA1 A;  3Q9C A;  4ZUP A;  2VQM A; 
#chains in the Genus database with same CATH topology
 4MYL A;  4RN0 A;  5G13 A;  5THU A;  3MEN A;  4Q3T A;  5RLA A;  1T67 A;  4ZUQ A;  3MZ3 A;  5G0X A;  5D1B A;  3RQD A;  4RHJ A;  4RHK A;  4QA3 A;  5EEI A;  4IXU A;  1WVB A;  1PQ3 A;  2PHO A;  2VQQ A;  5THS A;  3GMZ A;  1T5G A;  1ZZ0 A;  3MJL A;  3Q9F A;  5G0I A;  3MAX A;  4GSV A;  3NIO A;  3CEV A;  1HQH A;  5G1A A;  2RLA A;  4MXR A;  4Q3R A;  5EF8 A;  1D3V A;  1WOH A;  3TH7 A;  3C0Y A;  3NIP A;  4IE1 A;  3THE A;  4A69 A;  1P8M A;  4RHI A;  1P8N A;  5DC6 A;  5DC8 A;  4MYK A;  5G11 A;  1RLA A;  3EWF A;  4MYF A;  1T4P A;  1C3S A;  2EF5 A;  5BWZ A;  4IE3 A;  4QA2 A;  4DZ4 A;  1T4R A;  5G1B A;  4IU0 A;  4Q42 A;  5IX0 A;  3C0Z A;  5A2S A;  4RHL A;  4G3H A;  5G0J A;  5EFN A;  5EFB D;  3SFF A;  1C3P A;  4Q41 A;  1CEV A;  3TF3 A;  1WVA A;  3KV2 A;  4FCI A;  5EFG A;  5EEN A;  3F0R A;  3MFW A;  4QA4 A;  4ZUM A;  4RN1 A;  1T4S A;  5FCW A;  3SJT A;  4CEV A;  1VKG A;  4QA6 A;  5EEK A;  4I06 A;  2EF4 A;  1GQ7 A;  3E6V A;  1T4T A;  4LXZ A;  1HQ5 A;  5D1D A;  5ICN B;  4ZUR A;  4Q3Q A;  2VQW G;  2V5W A;  5EEM A;  2V5X A;  3E9B A;  5LI3 A;  5THT A;  3RLA A;  1P8O A;  3EZP A;  4Q3U A;  3E8Z A;  4Q3V A;  4CBT A;  4BKX B;  3M1R A;  3DJ8 A;  5EF7 A;  4BZ8 A;  4RHM A;  4QA0 A;  3LP4 A;  1XFK A;  2GH6 A;  4Q3P A;  5HJ9 A;  3MFV A;  3E8Q A;  4FCK A;  4GSM A;  4IE2 A;  2CEV A;  4ITY A;  4BZ9 A;  2PLL A;  3ZNS A;  5DC7 A;  5G12 A;  3GN0 A;  3THH A;  3F80 A;  5EEF A;  4QA5 A;  3MZ4 A;  4IU5 A;  1ZPE A;  1T64 A;  5G0Y A;  3SL1 A;  4CBY A;  2ZAV A;  1ZZ1 A;  1HQX A;  4Q3R C;  5DC5 A;  1WOG A;  1WOI A;  4GWC A;  4BZ7 A;  5G10 A;  3MZ6 A;  4HWW A;  5IWG A;  3Q9B A;  2VQV A;  1T69 A;  3NIQ A;  4RHQ A;  5EFJ D;  1P8R A;  3MZ7 A;  3PZL A;  4QA7 A;  5D1C A;  5CEV A;  4BZ6 A;  4ZUN A;  5HJA A;  1ZPG A;  3LHL A;  1W22 A;  4IXV A;  4MYN A;  4Q40 A;  4IU4 A;  4ZUO A;  5G0G A;  3MMR A;  4HXQ A;  1TA1 A;  4RN2 A;  3E6K A;  5G1C A;  3C10 A;  3SFH A;  3SL0 A;  5THV A;  5JI5 A;  3SKK A;  5EFH A;  4LY1 A;  1GQ6 A;  2EIV A;  1TBJ A;  4CQF A;  1C3R A;  1ZZ3 A;  5FUE A;  1P8Q A;  3THJ A;  1HQF A;  4Q3S A;  4RLA A;  2PHA A;  2AEB A;  3F06 A;  1TBH A;  4HZE A;  3ZNR A;  3EW8 A;  1TBL A;  2A0M A;  3EZT A;  4GWD A;  3LP7 A;  2VQO A;  3Q9E A;  1P8P A;  1T5F A;  5EFK B;  1R1O A;  2VCG A;  4GSZ A;  1P8S A;  2VQJ A;  3F07 A;  5G0H A;  5G3W A;  5G17 A;  4BZ5 A;  1HQG A;  4QA1 A;  3Q9C A;  4ZUP A;  2VQM A;  4IU1 A; 
#chains in the Genus database with same CATH homology
 5THU A;  4RN0 A;  5G13 A;  3MEN A;  1T67 A;  4ZUQ A;  3MZ3 A;  5G0X A;  5D1B A;  3RQD A;  4QA3 A;  5EEI A;  2VQQ A;  5THS A;  1ZZ0 A;  3Q9F A;  5G0I A;  3MAX A;  5G1A A;  5EF8 A;  3C0Y A;  4A69 A;  5DC6 A;  5DC8 A;  5G11 A;  3EWF A;  1C3S A;  5BWZ A;  4QA2 A;  5G1B A;  5IX0 A;  3C0Z A;  5A2S A;  5G0J A;  5EFN A;  5EFB D;  3SFF A;  1C3P A;  5EFG A;  5EEN A;  3F0R A;  4QA4 A;  4ZUM A;  4RN1 A;  5FCW A;  1VKG A;  4QA6 A;  5EEK A;  4LXZ A;  5D1D A;  5ICN B;  4ZUR A;  5EEM A;  2VQW G;  2V5W A;  2V5X A;  5LI3 A;  5THT A;  3EZP A;  4CBT A;  4BKX B;  5EF7 A;  4BZ8 A;  4QA0 A;  2GH6 A;  4BZ9 A;  3ZNS A;  5DC7 A;  5G12 A;  5EEF A;  4QA5 A;  3MZ4 A;  1T64 A;  5G0Y A;  4CBY A;  1ZZ1 A;  5DC5 A;  4BZ7 A;  5G10 A;  3MZ6 A;  5IWG A;  3Q9B A;  1T69 A;  2VQV A;  5EFJ D;  3MZ7 A;  4QA7 A;  5D1C A;  4BZ6 A;  4ZUN A;  4ZUO A;  5G0G A;  1W22 A;  4RN2 A;  5G1C A;  3SFH A;  3C10 A;  5THV A;  5JI5 A;  5EFH A;  4LY1 A;  4CQF A;  1C3R A;  1ZZ3 A;  5FUE A;  3F06 A;  3ZNR A;  3EW8 A;  3EZT A;  2VQO A;  3Q9E A;  5EFK B;  2VCG A;  5G17 A;  5G3W A;  2VQJ A;  3F07 A;  5G0H A;  4BZ5 A;  4QA1 A;  3Q9C A;  4ZUP A;  2VQM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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