4ZYJA

Streptomyces peucetius nitrososynthase dnmz in tdp-bound state
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
395
structure length
388
Chain Sequence
GVLADNGLCEPKTPAGRRLLDLLERYLPALEAESRDNDREATLPVHLFDRMRKEGVLGATVPEDLGGLGVHSLHDVALALARIAGRDAGVALALHMQFSRGLTLDFEWRHGAPSTRPLAEDLLRQMGAGEAVICGAVKDVRGTTVLTRDGSYRLNGRKTLVSMAGIATHYVVSTRLEEAPVRLAAPVVARTTPGLTVLDNWDGMGMRSSGSVDIVFDGCPVDRDRVLPRGEPDDAALAGQTVSSIAMLGIYVGIAEAARRIALTELRRRGGAPAGVRTTVAEIDARLFALHTAVASALTTADRLADDLSGDLAARGRAMMTPFQYAKLLVNRHSVGVVDDCLMLVGGAGYSNSHPLARLYRDVRAGGFMHPYNFTDGVDYLSEVALGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords DnmZ
publication title Structure of DnmZ, a nitrososynthase in the Streptomyces peucetius anthracycline biosynthetic pathway.
pubmed doi rcsb
source organism Streptomyces peucetius
total genus 143
structure length 388
sequence length 395
chains with identical sequence B, C, D
ec nomenclature ec 1.14.13.187: L-evernosamine nitrososynthase.
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4zyjA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4zyjA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4zyjA02
3BNHA 3R7KA 3SXQA 4L3ZA 4L3XA 2C0UA 1FS8A 3MXLA 5K3HA 1R2JA 3LGQA 4U83A 3D6BA 2VR0A 3LG1A 3RKHA 3EONA 3X0XA 3SCEA 1BUCA 2A1TA 1SIQA 4KCFA 3F29A 4M9AA 3S7WA 1SIRA 3D9EA 3BNJA 4G5EA 3GM6A 4RM7A 3MKHA 4L3YA 2R0MA 4KTOA 1WS9A 2IX5A 3X0YA 2YYMA 2OR0A 3L1TA 4WJYA 1UKWA 4Q0TA 2DVLA 4HR3A 1FS7A 2E81A 3AFEA 3UBRA 4Q17A 2YYGA 1GU6A 4X28A 2RFQA 4Q4UA 4ZYJA 4OO2A 3BNGA 3D9FA 3GQTA 2FONA 1T9GA 3D9GA 4IV6A 3FO3A 2CX9A 2ZAFA 4DOYA 2C12A 4X28C 2JBTA 2IX6A 1U8VA 1FS9A 2YYIA 3D1IA 2RDZA 1IVHA 3PFDA 3MMOA 3MDDA 4ZXVA 1EGEA 1W07A 1EGDA 4NXLA 2RF7A 1JQIA 1QDBA 3II9A 2OT4A 3OWMA 4Q1OA 2E80A 2JBRA 5K3JA 4XVXA 1IS2A 2R0NA 4W9UA 3B96A 4Q5CA 3BNFA 2ZO5A 1UDYA 4Q5BA 1RX0A 4P13A 2PG0A 3OIBA 2UXWA 3FCJA 3TTBA 3TORA 1EGCA 3P4TA 2Z1QA 3AFFA 2YYKA 3SF6A 2JIFA 3MPJA 3HWCA 3D9DA 2REHA 4O5MA 4L1FA 2JBSA 3NF4A 4JEKA 3GNCA 2WBIA 5K3GA 3EOMA 3M9VA 2YYLA 3SWOA 2YYJA 2EBAA 4IRNA 3MDEA 4N5FA 5K3IA 2J7AA 2D29A 2VIGA 2DDHA 4L38A 3MPIA 3OWAA 1OAHA 3UU9A
chains in the Genus database with same CATH superfamily
3BNHA 2ZDXA 3C46A 3R7KA 3SXQA 2E0AA 2OEXA 5M4NA 4L3ZA 4L3XA 2C0UA 1XFUA 4JIOA 1FS8A 3MXLA 5K3HA 1R2JA 3LGQA 3Q0AA 1X90A 5GJVE 2Q8IA 4U83A 5GJWE 3D6BA 2VR0A 3LG1A 3RKHA 3EONA 3VADA 3X0XA 1S26A 1Y8OA 2AZEA 2BU7A 1RJ4A 3SCEA 3DJLA 3C3LA 2QR4A 4FF1A 4KSAA 1BUCA 2XS1A 2A1TA 1SIQA 4KCFA 3F29A 4M9AA 2CJ7A 3S7WA 2FP2A 1SIRA 2LFWA 3D9EA 2XS8A 3BNJA 4G5EA 3GM6A 4RM7A 4E02A 5B6BA 3MKHA 4L3YA 4LQQB 2R0MA 2BTZA 2R02A 1XFZA 4AKGA 4MP7A 2PNRA 2Q8FA 3TZ5A 3KMLA 4KTOA 1WS9A 2IX5A 3X0YA 2YYMA 2OR0A 3L1TA 5B5WA 1XFVA 1UKWA 4WJYA 4HKSA 4Q0TA 4DZYA 2DVLA 4HR3A 1FS7A 1Y8NA 3AFEA 2E81A 3UBRA 5BRKA 3Q22A 4Q17A 3CE2A 2YYGA 1GU6A 1K90A 3D2RA 1Y0VA 4MP2A 4X28A 4AKIA 2RFQA 4Q4UA 4ZYJA 4OO2A 2XQRB 3BNGA 2Q8GA 1XFYA 3TZ4A 3D9FA 3GQTA 2FONA 1T9GA 3D9GA 4IV6A 1XFWA 3FO3A 3X29A 2CX9A 2EBFX 4MPEA 1Y8PA 4FZ4A 4FF4A 2CJ6A 2ZAFA 4DOYA 2EC5A 2C12A 4AKHA 5M4PA 2HJNA 4X28C 4KSFA 2JBTA 2IX6A 1RP3A 1U8VA 2ZKJA 3CRKA 1FS9A 1RJ1A 4KS9A 2YYIA 3VKGA 2BU2A 3D1IA 2RDZA 4V26A 1IVHA 3PFDA 3MMOA 3MDDA 4ZXVA 1EGEA 1W07A 1X91A 1EGDA 1K93A 4JIZA 4NXLA 4AI6A 2RF7A 1JQIA 1X8ZA 4H85A 1GKXA 1QDBA 4HKRA 2CJ4A 2YGWA 2Q8HA 3VKHA 2OJQA 3II9A 2OT4A 1GKZA 1SK6A 1XFXA 3OWMA 4Q1OA 2E80A 1PK0A 2JBRA 3C2PA 2R03A 5K3JA 1K8TA 2ZDYA 4J1VA 4XVXA 1SC5A 1IS2A 2R0NA 4W9UA 1GJVA 1PI1A 2FP1A 2OEVA 4MPNA 4F0XA 3B96A 2CJ8A 3BNFA 4LQSB 4Q5CA 2BU8A 2ZO5A 4V25A 1UDYA 4Q5BA 1RX0A 3Q24A 4FF2A 4P13A 2PG0A 3OIBA 3Q23A 2UXWA 3FCJA 3TTBA 3TORA 3N0RA 1EGCA 4H7QA 3P4TA 4MPCA 2Z1QA 3AFFA 2GBBA 2YYKA 5M4MA 3SF6A 2JIFA 3MPJA 4FF3A 3U33A 3HWCA 2R05A 3D9DA 2REHA 2BU6A 4O5MA 4E00A 5J71A 4L1FA 2JBSA 5J6AA 3NF4A 4JEKA 3GNCA 2WBIA 5K3GA 3EOMA 3M9VA 1LVCA 2YYLA 3SWOA 4G97A 2PO4A 2YYJA 3CRLA 2EBAA 4IRNA 5B5VA 3TZ2A 2AO2A 3MDEA 4N5FA 1JM6A 5K3IA 1R3BA 1XG2B 4H81A 4QICA 5M4KA 2J7AA 2EBHX 2D29A 2VIGA 2DDHA 4L38A 3MPIA 5EZ3A 3OWAA 4E01A 2BU5A 3TZ0A 2VF1A 5BRMA 1OAHA 2CJ5A 3UU9A 2F6LA 4P79A
chains in the Genus database with same CATH topology
3BNHA 3R7KA 3SXQA 4L3ZA 4L3XA 2C0UA 1FS8A 3MXLA 5K3HA 1R2JA 3LGQA 4U83A 3D6BA 2VR0A 3LG1A 3RKHA 3EONA 3X0XA 3SCEA 1BUCA 2A1TA 1SIQA 4KCFA 3F29A 4M9AA 3S7WA 1SIRA 3D9EA 3BNJA 4G5EA 3GM6A 4RM7A 3MKHA 4L3YA 2R0MA 4KTOA 1WS9A 2IX5A 3X0YA 2YYMA 2OR0A 3L1TA 4WJYA 1UKWA 4Q0TA 2DVLA 4HR3A 1FS7A 2E81A 3AFEA 3UBRA 4Q17A 2YYGA 1GU6A 4X28A 2RFQA 4Q4UA 4ZYJA 4OO2A 3BNGA 3D9FA 3GQTA 2FONA 1T9GA 3D9GA 4IV6A 3FO3A 2CX9A 2ZAFA 4DOYA 2C12A 4X28C 2JBTA 2IX6A 1U8VA 1FS9A 2YYIA 3D1IA 2RDZA 1IVHA 3PFDA 3MMOA 3MDDA 4ZXVA 1EGEA 1W07A 1EGDA 4NXLA 2RF7A 1JQIA 1QDBA 3II9A 2OT4A 3OWMA 4Q1OA 2E80A 2JBRA 5K3JA 4XVXA 1IS2A 2R0NA 4W9UA 3B96A 4Q5CA 3BNFA 2ZO5A 1UDYA 4Q5BA 1RX0A 4P13A 2PG0A 3OIBA 2UXWA 3FCJA 3TTBA 3TORA 1EGCA 3P4TA 2Z1QA 3AFFA 2YYKA 3SF6A 2JIFA 3MPJA 3HWCA 3D9DA 2REHA 4O5MA 4L1FA 2JBSA 3NF4A 4JEKA 3GNCA 2WBIA 5K3GA 3EOMA 3M9VA 2YYLA 3SWOA 2YYJA 2EBAA 4IRNA 3MDEA 4N5FA 5K3IA 2J7AA 2D29A 2VIGA 2DDHA 4L38A 3MPIA 3OWAA 1OAHA 3UU9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BNH A;  3R7K A;  3SXQ A;  4L3Z A;  4L3X A;  2C0U A;  1FS8 A;  3MXL A;  5K3H A;  1R2J A;  3LGQ A;  4U83 A;  3D6B A;  2VR0 A;  3LG1 A;  3RKH A;  3EON A;  3X0X A;  3SCE A;  1BUC A;  2A1T A;  1SIQ A;  4KCF A;  3F29 A;  4M9A A;  3S7W A;  1SIR A;  3D9E A;  3BNJ A;  4G5E A;  3GM6 A;  4RM7 A;  3MKH A;  4L3Y A;  2R0M A;  4KTO A;  1WS9 A;  2IX5 A;  3X0Y A;  2YYM A;  2OR0 A;  3L1T A;  4WJY A;  1UKW A;  4Q0T A;  2DVL A;  4HR3 A;  1FS7 A;  2E81 A;  3AFE A;  3UBR A;  4Q17 A;  2YYG A;  1GU6 A;  4X28 A;  2RFQ A;  4Q4U A;  4ZYJ A;  4OO2 A;  3BNG A;  3D9F A;  3GQT A;  2FON A;  1T9G A;  3D9G A;  4IV6 A;  3FO3 A;  2CX9 A;  2ZAF A;  4DOY A;  2C12 A;  4X28 C;  2JBT A;  2IX6 A;  1U8V A;  1FS9 A;  2YYI A;  3D1I A;  2RDZ A;  1IVH A;  3PFD A;  3MMO A;  3MDD A;  4ZXV A;  1EGE A;  1W07 A;  1EGD A;  4NXL A;  2RF7 A;  1JQI A;  1QDB A;  3II9 A;  2OT4 A;  3OWM A;  4Q1O A;  2E80 A;  2JBR A;  5K3J A;  4XVX A;  1IS2 A;  2R0N A;  4W9U A;  3B96 A;  4Q5C A;  3BNF A;  2ZO5 A;  1UDY A;  4Q5B A;  1RX0 A;  4P13 A;  2PG0 A;  3OIB A;  2UXW A;  3FCJ A;  3TTB A;  3TOR A;  1EGC A;  3P4T A;  2Z1Q A;  3AFF A;  2YYK A;  3SF6 A;  2JIF A;  3MPJ A;  3HWC A;  3D9D A;  2REH A;  4O5M A;  4L1F A;  2JBS A;  3NF4 A;  4JEK A;  3GNC A;  2WBI A;  5K3G A;  3EOM A;  3M9V A;  2YYL A;  3SWO A;  2YYJ A;  2EBA A;  4IRN A;  3MDE A;  4N5F A;  5K3I A;  2J7A A;  2D29 A;  2VIG A;  2DDH A;  4L38 A;  3MPI A;  3OWA A;  1OAH A;  3UU9 A; 
#chains in the Genus database with same CATH topology
 3BNH A;  2ZDX A;  3C46 A;  3R7K A;  3SXQ A;  2E0A A;  2OEX A;  5M4N A;  4L3Z A;  4L3X A;  2C0U A;  1XFU A;  4JIO A;  1FS8 A;  3MXL A;  5K3H A;  1R2J A;  3LGQ A;  3Q0A A;  1X90 A;  5GJV E;  2Q8I A;  4U83 A;  5GJW E;  3D6B A;  2VR0 A;  3LG1 A;  3RKH A;  3EON A;  3VAD A;  3X0X A;  1S26 A;  1Y8O A;  2AZE A;  2BU7 A;  1RJ4 A;  3SCE A;  3DJL A;  3C3L A;  2QR4 A;  4FF1 A;  4KSA A;  1BUC A;  2XS1 A;  2A1T A;  1SIQ A;  4KCF A;  3F29 A;  4M9A A;  2CJ7 A;  3S7W A;  2FP2 A;  1SIR A;  2LFW A;  3D9E A;  2XS8 A;  3BNJ A;  4G5E A;  3GM6 A;  4RM7 A;  4E02 A;  5B6B A;  3MKH A;  4L3Y A;  4LQQ B;  2R0M A;  2BTZ A;  2R02 A;  1XFZ A;  4AKG A;  4MP7 A;  2PNR A;  2Q8F A;  3TZ5 A;  3KML A;  4KTO A;  1WS9 A;  2IX5 A;  3X0Y A;  2YYM A;  2OR0 A;  3L1T A;  5B5W A;  1XFV A;  1UKW A;  4WJY A;  4HKS A;  4Q0T A;  4DZY A;  2DVL A;  4HR3 A;  1FS7 A;  1Y8N A;  3AFE A;  2E81 A;  3UBR A;  5BRK A;  3Q22 A;  4Q17 A;  3CE2 A;  2YYG A;  1GU6 A;  1K90 A;  3D2R A;  1Y0V A;  4MP2 A;  4X28 A;  4AKI A;  2RFQ A;  4Q4U A;  4ZYJ A;  4OO2 A;  2XQR B;  3BNG A;  2Q8G A;  1XFY A;  3TZ4 A;  3D9F A;  3GQT A;  2FON A;  1T9G A;  3D9G A;  4IV6 A;  1XFW A;  3FO3 A;  3X29 A;  2CX9 A;  2EBF X;  4MPE A;  1Y8P A;  4FZ4 A;  4FF4 A;  2CJ6 A;  2ZAF A;  4DOY A;  2EC5 A;  2C12 A;  4AKH A;  5M4P A;  2HJN A;  4X28 C;  4KSF A;  2JBT A;  2IX6 A;  1RP3 A;  1U8V A;  2ZKJ A;  3CRK A;  1FS9 A;  1RJ1 A;  4KS9 A;  2YYI A;  3VKG A;  2BU2 A;  3D1I A;  2RDZ A;  4V26 A;  1IVH A;  3PFD A;  3MMO A;  3MDD A;  4ZXV A;  1EGE A;  1W07 A;  1X91 A;  1EGD A;  1K93 A;  4JIZ A;  4NXL A;  4AI6 A;  2RF7 A;  1JQI A;  1X8Z A;  4H85 A;  1GKX A;  1QDB A;  4HKR A;  2CJ4 A;  2YGW A;  2Q8H A;  3VKH A;  2OJQ A;  3II9 A;  2OT4 A;  1GKZ A;  1SK6 A;  1XFX A;  3OWM A;  4Q1O A;  2E80 A;  1PK0 A;  2JBR A;  3C2P A;  2R03 A;  5K3J A;  1K8T A;  2ZDY A;  4J1V A;  4XVX A;  1SC5 A;  1IS2 A;  2R0N A;  4W9U A;  1GJV A;  1PI1 A;  2FP1 A;  2OEV A;  4MPN A;  4F0X A;  3B96 A;  2CJ8 A;  3BNF A;  4LQS B;  4Q5C A;  2BU8 A;  2ZO5 A;  4V25 A;  1UDY A;  4Q5B A;  1RX0 A;  3Q24 A;  4FF2 A;  4P13 A;  2PG0 A;  3OIB A;  3Q23 A;  2UXW A;  3FCJ A;  3TTB A;  3TOR A;  3N0R A;  1EGC A;  4H7Q A;  3P4T A;  4MPC A;  2Z1Q A;  3AFF A;  2GBB A;  2YYK A;  5M4M A;  3SF6 A;  2JIF A;  3MPJ A;  4FF3 A;  3U33 A;  3HWC A;  2R05 A;  3D9D A;  2REH A;  2BU6 A;  4O5M A;  4E00 A;  5J71 A;  4L1F A;  2JBS A;  5J6A A;  3NF4 A;  4JEK A;  3GNC A;  2WBI A;  5K3G A;  3EOM A;  3M9V A;  1LVC A;  2YYL A;  3SWO A;  4G97 A;  2PO4 A;  2YYJ A;  3CRL A;  2EBA A;  4IRN A;  5B5V A;  3TZ2 A;  2AO2 A;  3MDE A;  4N5F A;  1JM6 A;  5K3I A;  1R3B A;  1XG2 B;  4H81 A;  4QIC A;  5M4K A;  2J7A A;  2EBH X;  2D29 A;  2VIG A;  2DDH A;  4L38 A;  3MPI A;  5EZ3 A;  3OWA A;  4E01 A;  2BU5 A;  3TZ0 A;  2VF1 A;  5BRM A;  1OAH A;  2CJ5 A;  3UU9 A;  2F6L A;  4P79 A; 
#chains in the Genus database with same CATH homology
 3BNH A;  3R7K A;  3SXQ A;  4L3Z A;  4L3X A;  2C0U A;  1FS8 A;  3MXL A;  5K3H A;  1R2J A;  3LGQ A;  4U83 A;  3D6B A;  2VR0 A;  3LG1 A;  3RKH A;  3EON A;  3X0X A;  3SCE A;  1BUC A;  2A1T A;  1SIQ A;  4KCF A;  3F29 A;  4M9A A;  3S7W A;  1SIR A;  3D9E A;  3BNJ A;  4G5E A;  3GM6 A;  4RM7 A;  3MKH A;  4L3Y A;  2R0M A;  4KTO A;  1WS9 A;  2IX5 A;  3X0Y A;  2YYM A;  2OR0 A;  3L1T A;  4WJY A;  1UKW A;  4Q0T A;  2DVL A;  4HR3 A;  1FS7 A;  2E81 A;  3AFE A;  3UBR A;  4Q17 A;  2YYG A;  1GU6 A;  4X28 A;  2RFQ A;  4Q4U A;  4ZYJ A;  4OO2 A;  3BNG A;  3D9F A;  3GQT A;  2FON A;  1T9G A;  3D9G A;  4IV6 A;  3FO3 A;  2CX9 A;  2ZAF A;  4DOY A;  2C12 A;  4X28 C;  2JBT A;  2IX6 A;  1U8V A;  1FS9 A;  2YYI A;  3D1I A;  2RDZ A;  1IVH A;  3PFD A;  3MMO A;  3MDD A;  4ZXV A;  1EGE A;  1W07 A;  1EGD A;  4NXL A;  2RF7 A;  1JQI A;  1QDB A;  3II9 A;  2OT4 A;  3OWM A;  4Q1O A;  2E80 A;  2JBR A;  5K3J A;  4XVX A;  1IS2 A;  2R0N A;  4W9U A;  3B96 A;  4Q5C A;  3BNF A;  2ZO5 A;  1UDY A;  4Q5B A;  1RX0 A;  4P13 A;  2PG0 A;  3OIB A;  2UXW A;  3FCJ A;  3TTB A;  3TOR A;  1EGC A;  3P4T A;  2Z1Q A;  3AFF A;  2YYK A;  3SF6 A;  2JIF A;  3MPJ A;  3HWC A;  3D9D A;  2REH A;  4O5M A;  4L1F A;  2JBS A;  3NF4 A;  4JEK A;  3GNC A;  2WBI A;  5K3G A;  3EOM A;  3M9V A;  2YYL A;  3SWO A;  2YYJ A;  2EBA A;  4IRN A;  3MDE A;  4N5F A;  5K3I A;  2J7A A;  2D29 A;  2VIG A;  2DDH A;  4L38 A;  3MPI A;  3OWA A;  1OAH A;  3UU9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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