4AEZB

Crystal structure of mitotic checkpoint complex
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
Knots found
sequence length
189
structure length
180
Chain Sequence
KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDNKEDELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFSTSMHKIDCQVAYRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords WD REPEAT-CONTAINING PROTEIN SLP1
publication title Structure of the Mitotic Checkpoint Complex
pubmed doi rcsb
source organism Schizosaccharomyces pombe
total genus 58
structure length 180
sequence length 189
chains with identical sequence E, H
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2012-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02301 HORMA HORMA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.900.10 Alpha Beta 2-Layer Sandwich Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A HORMA domain 4aezB00
4AEZB 4GK5A 1DUJA 1GO4A 4TZQA 3ABDA 4TZMA 4GK0A 2QYFA 2V64A 4TZOA 4TRKA 4YK8B 2V64D 5C50B 4TZLA 5LCWZ 4FJOC 4TZSA 1S2HA 3ABEC 4EXTC 3VU7C 4TZJA 4J2GA 2VFXA 3GMHA 1KLQA 4TZNA
chains in the Genus database with same CATH superfamily
4AEZB 4GK5A 1DUJA 1GO4A 4TZQA 3ABDA 4TZMA 4GK0A 2QYFA 2V64A 4TZOA 4TRKA 4YK8B 2V64D 5C50B 4TZLA 5LCWZ 2QYFB 4FJOC 4TZSA 1S2HA 3ABEC 4EXTC 3VU7C 4TZJA 4J2GA 2VFXA 3GMHA 1KLQA 4TZNA
chains in the Genus database with same CATH topology
4AEZB 4GK5A 1DUJA 1GO4A 4TZQA 3ABDA 4TZMA 4GK0A 2QYFA 2V64A 4TZOA 4TRKA 4YK8B 2V64D 5C50B 4TZLA 5LCWZ 4FJOC 4TZSA 1S2HA 3ABEC 4EXTC 3VU7C 4TZJA 4J2GA 2VFXA 3GMHA 1KLQA 4TZNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AEZ B;  4GK5 A;  1DUJ A;  1GO4 A;  4TZQ A;  3ABD A;  4TZM A;  4GK0 A;  2QYF A;  2V64 A;  4TZO A;  4TRK A;  4YK8 B;  2V64 D;  5C50 B;  4TZL A;  5LCW Z;  4FJO C;  4TZS A;  1S2H A;  3ABE C;  4EXT C;  3VU7 C;  4TZJ A;  4J2G A;  2VFX A;  3GMH A;  1KLQ A;  4TZN A; 
#chains in the Genus database with same CATH topology
 4AEZ B;  4GK5 A;  1DUJ A;  1GO4 A;  4TZQ A;  3ABD A;  4TZM A;  4GK0 A;  2QYF A;  2V64 A;  4TZO A;  4TRK A;  4YK8 B;  2V64 D;  5C50 B;  4TZL A;  5LCW Z;  2QYF B;  4FJO C;  4TZS A;  1S2H A;  3ABE C;  4EXT C;  3VU7 C;  4TZJ A;  4J2G A;  2VFX A;  3GMH A;  1KLQ A;  4TZN A; 
#chains in the Genus database with same CATH homology
 4AEZ B;  4GK5 A;  1DUJ A;  1GO4 A;  4TZQ A;  3ABD A;  4TZM A;  4GK0 A;  2QYF A;  2V64 A;  4TZO A;  4TRK A;  4YK8 B;  2V64 D;  5C50 B;  4TZL A;  5LCW Z;  4FJO C;  4TZS A;  1S2H A;  3ABE C;  4EXT C;  3VU7 C;  4TZJ A;  4J2G A;  2VFX A;  3GMH A;  1KLQ A;  4TZN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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