The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
17
|
sequence length |
93
|
structure length |
93
|
Chain Sequence |
AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLVPEDRLQKEMERLYP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription/dna/rna
|
| molecule keywords |
DNA-directed RNA polymerase subunit alpha
|
| publication title |
Structural basis of transcriptional pausing in bacteria.
pubmed doi rcsb |
| source organism |
Thermus thermophilus
|
| total genus |
17
|
| structure length |
93
|
| sequence length |
93
|
| ec nomenclature |
ec
2.7.7.6: DNA-directed RNA polymerase. |
| pdb deposition date | 2012-09-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| E | PF01192 | RNA_pol_Rpb6 | RNA polymerase Rpb6 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Eukaryotic RPB6 RNA polymerase subunit | Eukaryotic RPB6 RNA polymerase subunit |
#chains in the Genus database with same CATH superfamily 5C4J F; 2E2J F; 4MEY E; 4Y7N F; 3M3Y F; 5D4E E; 3GTG F; 2NVX F; 4GZY E; 1TWG F; 4Y52 F; 5IYC F; 4OIQ E; 2PPB E; 3S17 F; 5M5W F; 3DXJ E; 2VUM F; 2R92 F; 4MEX E; 3HOZ F; 4C3I F; 4OIP E; 5C3E F; 3S16 F; 3I4M F; 4OIR E; 5M3F F; 5M3M F; 4OIO E; 4A3B F; 2Y0S I; 5M5Y F; 3CQZ F; 4A3C F; 3H0G F; 4YFN E; 4XLN E; 2NVT F; 5IPL E; 1TWF F; 3PO2 F; 1Y1W F; 4A3D F; 3I4N F; 5FJ8 F; 4MQ9 E; 1ZYR E; 4G7Z E; 3K7A F; 4A3E F; 1TWC F; 1R9T F; 4G7O E; 4LLG E; 1SFO F; 3HKZ K; 5E18 E; 4YG2 E; 4C2M F; 3H3V G; 2A68 E; 2A69 E; 4A3I F; 2O5I E; 1SMY E; 3S15 F; 3S1Q F; 1IW7 E; 3RZO F; 3S1R F; 4KN4 E; 4BY7 F; 4A3K F; 4KMU E; 4XSZ E; 5BYH E; 4BXX F; 2A6H E; 4A3M F; 1HQM E; 4A3J F; 3M4O F; 5D4D E; 4XSX E; 3HOX F; 5C44 F; 3GTP F; 3EQL E; 1I50 F; 4OIN E; 3S1N F; 4BY1 F; 4KN7 E; 3GTK F; 4Q5S E; 1YNJ K; 5TMC E; 3GTO F; 5TMF E; 4YFK E; 4BBR F; 3RZD F; 3S2D F; 5C4X F; 4ZH4 E; 4BBS F; 1K83 F; 3GTL F; 4Q4Z E; 3WOD E; 2YU9 F; 2JA6 F; 2O5J E; 4AYB K; 4A3G F; 4X6A F; 3HOY F; 3FKI F; 5IYD F; 4C3J F; 3HOU F; 4G7H E; 4LK0 E; 2JA8 F; 1I6V E; 2WB1 I; 1Y1V F; 2WAQ K; 4A3F F; 5E17 E; 5IYB F; 3HOW F; 1YNN K; 3S2H F; 2E2H F; 3GTQ F; 3S14 F; 4A93 F; 2B63 F; 3GTJ F; 2PMZ K; 2R93 F; 2A6E E; 3S1M F; 1TWA F; 1I3Q F; 3HOV F; 2JA7 F; 4YFX E; 2CW0 E; 2NVY F; 2JA5 F; 1I6H F; 4LJZ E; 2BE5 E; 4JK1 E; 1QKL A; 4LK1 E; 3GTM F; 4A3L F; 4C3H F; 1TWH F; 1WCM F; 5IP7 F; 5M5X F; 4XLP E; 2NVQ F; 2E2I F; 3PO3 F; 2R7Z F; 5D4C E; 5FLM F; 5IP9 F; #chains in the Genus database with same CATH topology 3PO3 E; 5C4J F; 2E2J F; 2R7Z E; 4MEY E; 1TWF E; 4QIW K; 4Y7N F; 5IP9 E; 5D4E E; 5FLM E; 5C4J E; 2NVX F; 3GTG F; 4Y7N E; 3I4N E; 2E2I E; 3M3Y E; 4A3D E; 4GZY E; 1TWG F; 4Y52 F; 1TWC E; 1DZF A; 1TWG E; 4Y52 E; 5IYC F; 4OIQ E; 1SFO E; 2PPB E; 3S17 F; 5M5W F; 3S17 E; 3DXJ E; 4AYB H; 5M5W E; 2R92 F; 2VUM F; 4MEX E; 2VUM E; 4QIW H; 2R92 E; 3HOZ F; 4C3I F; 4OIP E; 5C3E F; 3S16 F; 3I4M F; 3HOZ E; 4C3I E; 3RZO E; 3S1R E; 5C3E E; 4A3K E; 4OIR E; 5M3F F; 3S16 E; 5M3M F; 4OIO E; 4A3B F; 5M3F E; 2Y0S I; 5M5Y F; 2R7Z F; 4BXX E; 3CQZ F; 5M3M E; 4A3B E; 3H0G F; 4YFN E; 5M5Y E; 4XLN E; 4A3M E; 2NVT F; 4A3C F; 3PO2 E; 5IPL E; 4A3C E; 3H0G E; 1TWF F; 2NVT E; 1Y1W F; 3PO2 F; 4A3D F; 3HOX E; 5C44 E; 3I4N F; 3GTP E; 1Y1W E; 5FJ8 F; 4MQ9 E; 1ZYR E; 4G7Z E; 3K7A F; 4A3E F; 1TWC F; 5FJ8 E; 1R9T F; 4LLG E; 4G7O E; 1R9T E; 3K7A E; 4A3E E; 1I50 E; 1SFO F; 3HKZ K; 5E18 E; 4YG2 E; 4C2M F; 2KRX A; 3GTO E; 3H3V G; 2A68 E; 2A69 E; 4BBR E; 4C2M E; 1SMY E; 4A3I F; 3RZD E; 2O5I E; 3S15 F; 3S2D E; 4A3I E; 3S15 E; 3S1Q F; 3S1Q E; 1K83 E; 1IW7 E; 3RZO F; 3S1R F; 5C4X E; 4KN4 E; 2Y0S H; 4BY7 F; 4A3K F; 4KMU E; 4XSZ E; 5BYH E; 4BY7 E; 4BXX F; 2A6H E; 4A3M F; 1HQM E; 4A3J F; 3M4O F; 5D4D E; 3HOU E; 4XSX E; 3HOX F; 4A3J E; 5C44 F; 3M4O E; 3GTP F; 1Y1V E; 4A3F E; 3EQL E; 1I50 F; 4OIN E; 3S2H E; 3GTQ E; 3S1N F; 4BY1 F; 4KN7 E; 3GTK F; 4BY1 E; 3S1N E; 4Q5S E; 1YNJ K; 5TMC E; 3GTO F; 5TMF E; 4YFK E; 3GTK E; 3S1M E; 4BBR F; 3RZD F; 3S2D F; 5C4X F; 4ZH4 E; 2JA7 E; 1K83 F; 4BBS F; 3GTL F; 4Q4Z E; 3WOD E; 2JA5 E; 1I6H E; 4BBS E; 2YU9 F; 3GTM E; 3GTL E; 2JA6 F; 2O5J E; 4A3L E; 4C3H E; 5M5X E; 2YU9 E; 2JA6 E; 4AYB K; 4A3G F; 4X6A F; 3HOY F; 2WB1 H; 3FKI F; 5IYD F; 4C3J F; 3HKZ H; 3HOU F; 3HOY E; 4A3G E; 4X6A E; 3FKI E; 4G7H E; 5IYD E; 4C3J E; 4LK0 E; 2E2J E; 2JA8 F; 1I6V E; 3GTG E; 2WB1 I; 1Y1V F; 2WAQ K; 4A3F F; 2NVX E; 5IYB F; 2JA8 E; 5E17 E; 3HOW F; 1YNN K; 5IYB E; 3HOW E; 3S2H F; 2E2H F; 3GTQ F; 3S14 F; 4A93 F; 2B63 F; 2E2H E; 5IYC E; 3S14 E; 3GTJ F; 2PMZ K; 2B63 E; 4A93 E; 2R93 F; 2A6E E; 3GTJ E; 3S1M F; 1TWA F; 2R93 E; 1EIK A; 1I3Q F; 3HOV F; 3M3Y F; 1TWA E; 1I3Q E; 5FLM F; 2JA7 F; 3HOV E; 4YFX E; 2CW0 E; 2WAQ H; 2NVY F; 2JA5 F; 1I6H F; 4LJZ E; 3H3V F; 2BE5 E; 4JK1 E; 1QKL A; 4LK1 E; 3GTM F; 2NVY E; 3I4M E; 4A3L F; 4C3H F; 1TWH F; 1WCM F; 5IP7 F; 5M5X F; 4XLP E; 2NVQ F; 5IP7 E; 1TWH E; 1WCM E; 2E2I F; 3PO3 F; 3CQZ E; 2NVQ E; 5D4C E; 2PMZ H; 5IP9 F; #chains in the Genus database with same CATH homology 5C4J F; 2E2J F; 4MEY E; 4QIW K; 4Y7N F; 3M3Y F; 5D4E E; 3GTG F; 2NVX F; 4GZY E; 1TWG F; 4Y52 F; 5IYC F; 4OIQ E; 2PPB E; 3S17 F; 5M5W F; 3DXJ E; 2VUM F; 2R92 F; 4MEX E; 3HOZ F; 4C3I F; 4OIP E; 5C3E F; 3S16 F; 3I4M F; 4OIR E; 5M3F F; 5M3M F; 4OIO E; 4A3B F; 2Y0S I; 5M5Y F; 3CQZ F; 4A3C F; 3H0G F; 4YFN E; 4XLN E; 2NVT F; 5IPL E; 1TWF F; 3PO2 F; 1Y1W F; 4A3D F; 3I4N F; 5FJ8 F; 4MQ9 E; 1ZYR E; 4G7Z E; 3K7A F; 4A3E F; 1TWC F; 1R9T F; 4G7O E; 4LLG E; 1SFO F; 3HKZ K; 5E18 E; 4YG2 E; 4C2M F; 2KRX A; 3H3V G; 2A68 E; 2A69 E; 4A3I F; 2O5I E; 1SMY E; 3S15 F; 3S1Q F; 1IW7 E; 3RZO F; 3S1R F; 4KN4 E; 4BY7 F; 4A3K F; 4KMU E; 4XSZ E; 5BYH E; 4BXX F; 2A6H E; 4A3M F; 1HQM E; 4A3J F; 3M4O F; 5D4D E; 4XSX E; 3HOX F; 5C44 F; 3GTP F; 3EQL E; 1I50 F; 4OIN E; 3S1N F; 4BY1 F; 4KN7 E; 3GTK F; 4Q5S E; 1YNJ K; 5TMC E; 3GTO F; 5TMF E; 4YFK E; 4BBR F; 3RZD F; 3S2D F; 5C4X F; 4ZH4 E; 4BBS F; 1K83 F; 3GTL F; 4Q4Z E; 3WOD E; 2YU9 F; 2JA6 F; 2O5J E; 4AYB K; 4A3G F; 4X6A F; 3HOY F; 3FKI F; 5IYD F; 4C3J F; 3HOU F; 4G7H E; 4LK0 E; 2JA8 F; 1I6V E; 2WB1 I; 1Y1V F; 2WAQ K; 4A3F F; 5E17 E; 5IYB F; 3HOW F; 1YNN K; 3S2H F; 2E2H F; 3GTQ F; 3S14 F; 4A93 F; 2B63 F; 3GTJ F; 2PMZ K; 2R93 F; 2A6E E; 3S1M F; 1TWA F; 1I3Q F; 3HOV F; 2JA7 F; 4YFX E; 2CW0 E; 2NVY F; 2JA5 F; 1I6H F; 4LJZ E; 2BE5 E; 4JK1 E; 1QKL A; 4LK1 E; 3GTM F; 4A3L F; 4C3H F; 1TWH F; 1WCM F; 5IP7 F; 5M5X F; 4XLP E; 2NVQ F; 2E2I F; 3PO3 F; 2R7Z F; 5D4C E; 5FLM F; 5IP9 F;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
