4H3ZA

Crystal structure of a symmetric dimer of a trna (guanine-(n(1)-)-methyltransferase from burkholderia phymatum bound to s-adenosyl homocystein in both half-sites
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
Knots found
sequence length
255
structure length
249
Chain Sequence
SMQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDASK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Combining functional and structural genomics to sample the essential Burkholderia structome.
pubmed doi rcsb
source organism Burkholderia phymatum
total genus 81
structure length 249
sequence length 255
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2012-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4h3zA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4h3zA01
2YY8A 4YVJA 4L69A 1GZ0A 4YQ4A 3ONPA 1UALA 1OY5A 1IPAA 3IEFA 4YQGA 3KY7A 2Z0YA 4CNFA 3O7BA 4YQLA 4YQ8A 1Z85A 4YQ1A 4YQSA 4FAKA 3KTYA 4YQTA 1TO0A 4YQKA 4YQ6A 1UAJA 4PZKA 3OIJA 3E5YA 4CNDA 1X7OA 4YQIA 2I6DA 3ILKA 3AIAA 3OIIA 4YQ7A 1MXIA 2O3AA 5GMBA 3BBDA 4YQNA 1O6DA 4YPYA 2CX8A 5FAIA 4CNGA 4H3ZA 5CO4A 4CNEA 4YVHA 5GMCA 4YPXA 4YQ9A 5D9FA 3NK7A 2EGWA 4YQDA 2V3JA 3BBEA 3IC6A 4YVKA 1UAKA 3AXZA 4X3LA 4YQAA 4YPZA 1X7PA 4KDZA 4XBOA 4YQ3A 1NS5A 3QUVA 1V6ZA 4YQCA 4KGNA 1UAMA 3NK6A 3N4KA 4MCBA 4MCCA 4YQ5A 4RG1A 1V2XA 4MCDA 4IG6A 1P9PA 4YQ0A 3OINA 1J85A 1VHYA 4YQJA 3GYQA 4H3YA 3KW2A 5GM8A 4YVIA 4YQ2A 2QMMA 3DCMX 1K3RA 1VHKA 3AI9X 3KNUA 4YPWA 1VH0A 1ZJRA 1NXZA 4J3CA 2EGVA 4YQPA 2HA8A 4JAKA 4YVGA 2V3KA 4X3MA 3BBHA 4JALA 4YQOA 3L8UA 4YQQA 4E8BA 2QWVA 4YQBA 4YQRA 3N4JA
chains in the Genus database with same CATH superfamily
2YY8A 4YVJA 4L69A 1GZ0A 4YQ4A 1JHGA 3ONPA 4JWFA 1UALA 2OZ9R 1OY5A 1IPAA 3IEFA 4YQGA 3KY7A 2Z0YA 4CNFA 3O7BA 4YQLA 4YQ8A 1Z85A 4YQ1A 4YQSA 1MI7R 4FAKA 3KTYA 4YQTA 4YQKA 1TO0A 4FMWA 4YQ6A 1TROA 1UAJA 4PZKA 3OIJA 3E5YA 4CNDA 1X7OA 4YQIA 2I6DA 3ILKA 3AIAA 1WRTR 3OIIA 4YQ7A 1MXIA 2O3AA 5GMBA 3BBDA 4YQNA 1O6DA 4YPYA 2CX8A 5FAIA 4CNGA 4H3ZA 1CO0A 5CO4A 4CNEA 4YVHA 5GMCA 4YPXA 4YQ9A 5D9FA 3NK7A 2EGWA 4YQDA 2V3JA 3BBEA 3IC6A 4YVKA 1UAKA 3AXZA 4X3LA 4YQAA 4YPZA 1X7PA 4KDZA 4XBOA 1RCSA 4YQ3A 1NS5A 3QUVA 1V6ZA 4YQCA 4KGNA 1UAMA 3NK6A 3KORA 3N4KA 4MCBA 4YQ5A 4MCCA 4RG1A 1V2XA 4MCDA 4IG6A 1P9PA 1WRPR 4YQ0A 3OINA 1J85A 1VHYA 4YQJA 3GYQA 1ZT9A 4H3YA 3KW2A 1WRSR 5GM8A 3SSXN 4YVIA 4YQ2A 2QMMA 3DCMX 4JWJA 1K3RA 1VHKA 3AI9X 3KNUA 4YPWA 3FRWA 1VH0A 3G1CA 1TRRA 1ZJRA 1NXZA 4J3CA 2EGVA 2XDIA 4YQPA 3WRPA 2HA8A 4JAKA 4YVGA 2V3KA 4X3MA 3BBHA 4JALA 4YQOA 3L8UA 4YQQA 4E8BA 4JWHA 2QWVA 4YQBA 4JWGA 3SSWN 4YQRA 3N4JA
chains in the Genus database with same CATH topology
2YY8A 4YVJA 4L69A 1GZ0A 4YQ4A 3ONPA 4JWFA 1UALA 1OY5A 1IPAA 3IEFA 4YQGA 3KY7A 2Z0YA 4CNFA 3O7BA 4YQLA 4YQ8A 1Z85A 4YQ1A 4YQSA 4FAKA 3KTYA 4YQTA 1TO0A 4YQKA 4FMWA 4YQ6A 1UAJA 4PZKA 3OIJA 3E5YA 4CNDA 1X7OA 4YQIA 2I6DA 3ILKA 3AIAA 3OIIA 4YQ7A 1MXIA 2O3AA 5GMBA 3BBDA 4YQNA 1O6DA 4YPYA 2CX8A 5FAIA 4CNGA 4H3ZA 5CO4A 4CNEA 4YVHA 5GMCA 4YPXA 4YQ9A 5D9FA 3NK7A 2EGWA 4YQDA 2V3JA 3BBEA 3IC6A 4YVKA 1UAKA 3AXZA 4X3LA 4YQAA 4YPZA 1X7PA 4KDZA 4XBOA 4YQ3A 1NS5A 3QUVA 1V6ZA 4YQCA 4KGNA 1UAMA 3NK6A 3N4KA 4MCBA 4MCCA 4YQ5A 4RG1A 1V2XA 4MCDA 4IG6A 1P9PA 4YQ0A 3OINA 1J85A 1VHYA 4YQJA 3GYQA 4H3YA 3KW2A 5GM8A 4YVIA 4YQ2A 2QMMA 3DCMX 4JWJA 1K3RA 1VHKA 3AI9X 3KNUA 4YPWA 1VH0A 1ZJRA 1NXZA 4J3CA 2EGVA 4YQPA 2HA8A 4JAKA 4YVGA 2V3KA 4X3MA 3BBHA 4JALA 4YQOA 3L8UA 4YQQA 4E8BA 4JWHA 2QWVA 4YQBA 4JWGA 4YQRA 3N4JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YY8 A;  4YVJ A;  4L69 A;  1GZ0 A;  4YQ4 A;  3ONP A;  1UAL A;  1OY5 A;  1IPA A;  3IEF A;  4YQG A;  3KY7 A;  2Z0Y A;  4CNF A;  3O7B A;  4YQL A;  4YQ8 A;  1Z85 A;  4YQ1 A;  4YQS A;  4FAK A;  3KTY A;  4YQT A;  1TO0 A;  4YQK A;  4YQ6 A;  1UAJ A;  4PZK A;  3OIJ A;  3E5Y A;  4CND A;  1X7O A;  4YQI A;  2I6D A;  3ILK A;  3AIA A;  3OII A;  4YQ7 A;  1MXI A;  2O3A A;  5GMB A;  3BBD A;  4YQN A;  1O6D A;  4YPY A;  2CX8 A;  5FAI A;  4CNG A;  4H3Z A;  5CO4 A;  4CNE A;  4YVH A;  5GMC A;  4YPX A;  4YQ9 A;  5D9F A;  3NK7 A;  2EGW A;  4YQD A;  2V3J A;  3BBE A;  3IC6 A;  4YVK A;  1UAK A;  3AXZ A;  4X3L A;  4YQA A;  4YPZ A;  1X7P A;  4KDZ A;  4XBO A;  4YQ3 A;  1NS5 A;  3QUV A;  1V6Z A;  4YQC A;  4KGN A;  1UAM A;  3NK6 A;  3N4K A;  4MCB A;  4MCC A;  4YQ5 A;  4RG1 A;  1V2X A;  4MCD A;  4IG6 A;  1P9P A;  4YQ0 A;  3OIN A;  1J85 A;  1VHY A;  4YQJ A;  3GYQ A;  4H3Y A;  3KW2 A;  5GM8 A;  4YVI A;  4YQ2 A;  2QMM A;  3DCM X;  1K3R A;  1VHK A;  3AI9 X;  3KNU A;  4YPW A;  1VH0 A;  1ZJR A;  1NXZ A;  4J3C A;  2EGV A;  4YQP A;  2HA8 A;  4JAK A;  4YVG A;  2V3K A;  4X3M A;  3BBH A;  4JAL A;  4YQO A;  3L8U A;  4YQQ A;  4E8B A;  2QWV A;  4YQB A;  4YQR A;  3N4J A; 
#chains in the Genus database with same CATH topology
 2YY8 A;  4YVJ A;  4L69 A;  1GZ0 A;  4YQ4 A;  1JHG A;  3ONP A;  4JWF A;  1UAL A;  2OZ9 R;  1OY5 A;  1IPA A;  3IEF A;  4YQG A;  3KY7 A;  2Z0Y A;  4CNF A;  3O7B A;  4YQL A;  4YQ8 A;  1Z85 A;  4YQ1 A;  4YQS A;  1MI7 R;  4FAK A;  3KTY A;  4YQT A;  4YQK A;  1TO0 A;  4FMW A;  4YQ6 A;  1TRO A;  1UAJ A;  4PZK A;  3OIJ A;  3E5Y A;  4CND A;  1X7O A;  4YQI A;  2I6D A;  3ILK A;  3AIA A;  1WRT R;  3OII A;  4YQ7 A;  1MXI A;  2O3A A;  5GMB A;  3BBD A;  4YQN A;  1O6D A;  4YPY A;  2CX8 A;  5FAI A;  4CNG A;  4H3Z A;  1CO0 A;  5CO4 A;  4CNE A;  4YVH A;  5GMC A;  4YPX A;  4YQ9 A;  5D9F A;  3NK7 A;  2EGW A;  4YQD A;  2V3J A;  3BBE A;  3IC6 A;  4YVK A;  1UAK A;  3AXZ A;  4X3L A;  4YQA A;  4YPZ A;  1X7P A;  4KDZ A;  4XBO A;  1RCS A;  4YQ3 A;  1NS5 A;  3QUV A;  1V6Z A;  4YQC A;  4KGN A;  1UAM A;  3NK6 A;  3KOR A;  3N4K A;  4MCB A;  4YQ5 A;  4MCC A;  4RG1 A;  1V2X A;  4MCD A;  4IG6 A;  1P9P A;  1WRP R;  4YQ0 A;  3OIN A;  1J85 A;  1VHY A;  4YQJ A;  3GYQ A;  1ZT9 A;  4H3Y A;  3KW2 A;  1WRS R;  5GM8 A;  3SSX N;  4YVI A;  4YQ2 A;  2QMM A;  3DCM X;  4JWJ A;  1K3R A;  1VHK A;  3AI9 X;  3KNU A;  4YPW A;  3FRW A;  1VH0 A;  3G1C A;  1TRR A;  1ZJR A;  1NXZ A;  4J3C A;  2EGV A;  2XDI A;  4YQP A;  3WRP A;  2HA8 A;  4JAK A;  4YVG A;  2V3K A;  4X3M A;  3BBH A;  4JAL A;  4YQO A;  3L8U A;  4YQQ A;  4E8B A;  4JWH A;  2QWV A;  4YQB A;  4JWG A;  3SSW N;  4YQR A;  3N4J A; 
#chains in the Genus database with same CATH homology
 2YY8 A;  4YVJ A;  4L69 A;  1GZ0 A;  4YQ4 A;  3ONP A;  4JWF A;  1UAL A;  1OY5 A;  1IPA A;  3IEF A;  4YQG A;  3KY7 A;  2Z0Y A;  4CNF A;  3O7B A;  4YQL A;  4YQ8 A;  1Z85 A;  4YQ1 A;  4YQS A;  4FAK A;  3KTY A;  4YQT A;  1TO0 A;  4YQK A;  4FMW A;  4YQ6 A;  1UAJ A;  4PZK A;  3OIJ A;  3E5Y A;  4CND A;  1X7O A;  4YQI A;  2I6D A;  3ILK A;  3AIA A;  3OII A;  4YQ7 A;  1MXI A;  2O3A A;  5GMB A;  3BBD A;  4YQN A;  1O6D A;  4YPY A;  2CX8 A;  5FAI A;  4CNG A;  4H3Z A;  5CO4 A;  4CNE A;  4YVH A;  5GMC A;  4YPX A;  4YQ9 A;  5D9F A;  3NK7 A;  2EGW A;  4YQD A;  2V3J A;  3BBE A;  3IC6 A;  4YVK A;  1UAK A;  3AXZ A;  4X3L A;  4YQA A;  4YPZ A;  1X7P A;  4KDZ A;  4XBO A;  4YQ3 A;  1NS5 A;  3QUV A;  1V6Z A;  4YQC A;  4KGN A;  1UAM A;  3NK6 A;  3N4K A;  4MCB A;  4MCC A;  4YQ5 A;  4RG1 A;  1V2X A;  4MCD A;  4IG6 A;  1P9P A;  4YQ0 A;  3OIN A;  1J85 A;  1VHY A;  4YQJ A;  3GYQ A;  4H3Y A;  3KW2 A;  5GM8 A;  4YVI A;  4YQ2 A;  2QMM A;  3DCM X;  4JWJ A;  1K3R A;  1VHK A;  3AI9 X;  3KNU A;  4YPW A;  1VH0 A;  1ZJR A;  1NXZ A;  4J3C A;  2EGV A;  4YQP A;  2HA8 A;  4JAK A;  4YVG A;  2V3K A;  4X3M A;  3BBH A;  4JAL A;  4YQO A;  3L8U A;  4YQQ A;  4E8B A;  4JWH A;  2QWV A;  4YQB A;  4JWG A;  4YQR A;  3N4J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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