4IG6A

Crystal structure of a trna (guanine-n1)-methyltransferase from anaplasma phagocytophilum bound to s-adenosylhomocysteine
Total Genus 66
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
Knots found
sequence length
223
structure length
223
Chain Sequence
SMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPGMLLRADVLGRCIDEVLSLHPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGIDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPGVIGNAESLKQESMEGSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase/transferase inhibitor
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Crystal structure of a tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum bound to S-adenosylhomocysteine
rcsb
source organism Anaplasma phagocytophilum
total genus 66
structure length 223
sequence length 223
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2012-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4ig6A02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4ig6A01
3NK6A 1VH0A 3OINA 4PZKA 1K3RA 4MCBA 4YQCA 3E5YA 2Z0YA 4YPWA 3DCMX 1ZJRA 1GZ0A 3ONPA 4IG6A 4YQ3A 5GMCA 4YQ0A 5GMBA 1J85A 1VHKA 4YQQA 3OIJA 2V3JA 3N4KA 3IEFA 1UAMA 1MXIA 3BBEA 4J3CA 4YQPA 4RG1A 4L69A 4YQRA 4YQLA 4XBOA 2I6DA 4CNGA 1OY5A 4YVJA 4E8BA 2EGWA 4YQ7A 2EGVA 4YQKA 3AI9X 1UAJA 3L8UA 4YQGA 3KW2A 4CNFA 4YVGA 4YPZA 1V2XA 1IPAA 3ILKA 3KY7A 4FAKA 4YQTA 4YQAA 4YQ6A 4YQ1A 4YPYA 3NK7A 2QWVA 4YVIA 4KGNA 5FAIA 4YQJA 3QUVA 4MCCA 4CNDA 3AXZA 4YQOA 4YQ8A 4YQNA 4YQ4A 1V6ZA 2QMMA 4MCDA 1NS5A 4X3MA 4H3YA 3KTYA 3N4JA 2HA8A 2YY8A 1X7OA 3O7BA 1O6DA 4YPXA 4JAKA 1VHYA 4KDZA 4YQ2A 5GM8A 3BBHA 3IC6A 3KNUA 3GYQA 3BBDA 4YQSA 4YQBA 4CNEA 2O3AA 4YVKA 4X3LA 5CO4A 4YQIA 5D9FA 1NXZA 1Z85A 1TO0A 4YQDA 3AIAA 1X7PA 4H3ZA 1UAKA 2CX8A 4YQ5A 2V3KA 4YQ9A 1P9PA 4JALA 3OIIA 1UALA 4YVHA
chains in the Genus database with same CATH superfamily
3NK6A 1VH0A 3OINA 4PZKA 1K3RA 4MCBA 4YQCA 3E5YA 2Z0YA 4YPWA 3KORA 3DCMX 1ZJRA 2XDIA 1GZ0A 3ONPA 4FMWA 4IG6A 4YQ3A 5GMCA 4YQ0A 5GMBA 1J85A 1VHKA 4YQQA 3OIJA 2V3JA 3N4KA 3IEFA 1UAMA 1MXIA 3FRWA 3BBEA 4J3CA 4YQPA 4RG1A 3SSXN 1WRTR 4L69A 4YQRA 4YQLA 4XBOA 2I6DA 4CNGA 4JWFA 1OY5A 4YVJA 4E8BA 2EGWA 4YQ7A 2EGVA 4YQKA 3G1CA 1MI7R 3AI9X 1UAJA 3L8UA 4YQGA 3KW2A 4CNFA 4YVGA 4YPZA 1V2XA 1IPAA 3ILKA 2OZ9R 3KY7A 4FAKA 4YQTA 4YQAA 4YQ6A 4YQ1A 4JWGA 4YPYA 3NK7A 2QWVA 4YVIA 4KGNA 5FAIA 4YQJA 3QUVA 4MCCA 4JWHA 4CNDA 3AXZA 4YQOA 4YQ8A 4YQNA 1ZT9A 4YQ4A 1V6ZA 2QMMA 4MCDA 1NS5A 4X3MA 4H3YA 3KTYA 3N4JA 2HA8A 2YY8A 1X7OA 3O7BA 1O6DA 4YPXA 4JAKA 1VHYA 4KDZA 4YQ2A 5GM8A 1CO0A 3BBHA 3IC6A 3KNUA 3GYQA 3BBDA 4YQSA 1TRRA 4YQBA 4CNEA 1RCSA 1TROA 2O3AA 4YVKA 4X3LA 5CO4A 4YQIA 5D9FA 1NXZA 1Z85A 1TO0A 4YQDA 3AIAA 4H3ZA 1X7PA 1WRSR 4JWJA 1UAKA 2CX8A 1WRPR 4YQ5A 2V3KA 3WRPA 3SSWN 4YQ9A 1P9PA 4JALA 1JHGA 3OIIA 1UALA 4YVHA
chains in the Genus database with same CATH topology
3NK6A 1VH0A 3OINA 4PZKA 1K3RA 4MCBA 4YQCA 3E5YA 2Z0YA 4YPWA 3DCMX 1ZJRA 1GZ0A 3ONPA 4FMWA 4IG6A 4YQ3A 5GMCA 4YQ0A 5GMBA 1J85A 1VHKA 4YQQA 3OIJA 2V3JA 3N4KA 3IEFA 1UAMA 1MXIA 3BBEA 4J3CA 4YQPA 4RG1A 4L69A 4YQRA 4YQLA 4XBOA 2I6DA 4CNGA 4JWFA 1OY5A 4YVJA 4E8BA 2EGWA 4YQ7A 2EGVA 4YQKA 3AI9X 1UAJA 3L8UA 4YQGA 3KW2A 4CNFA 4YVGA 4YPZA 1V2XA 1IPAA 3ILKA 3KY7A 4FAKA 4YQTA 4YQAA 4YQ6A 4YQ1A 4JWGA 4YPYA 3NK7A 2QWVA 4YVIA 4KGNA 5FAIA 4YQJA 3QUVA 4MCCA 4JWHA 4CNDA 3AXZA 4YQOA 4YQ8A 4YQNA 4YQ4A 1V6ZA 2QMMA 4MCDA 1NS5A 4X3MA 4H3YA 3KTYA 3N4JA 2HA8A 2YY8A 1X7OA 3O7BA 1O6DA 4YPXA 4JAKA 1VHYA 4KDZA 4YQ2A 5GM8A 3BBHA 3IC6A 3KNUA 3GYQA 3BBDA 4YQSA 4YQBA 4CNEA 2O3AA 4YVKA 4X3LA 5CO4A 4YQIA 5D9FA 1NXZA 1Z85A 1TO0A 4YQDA 3AIAA 1X7PA 4H3ZA 4JWJA 1UAKA 2CX8A 4YQ5A 2V3KA 4YQ9A 1P9PA 4JALA 3OIIA 1UALA 4YVHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NK6 A;  1VH0 A;  3OIN A;  4PZK A;  1K3R A;  4MCB A;  4YQC A;  3E5Y A;  2Z0Y A;  4YPW A;  3DCM X;  1ZJR A;  1GZ0 A;  3ONP A;  4IG6 A;  4YQ3 A;  5GMC A;  4YQ0 A;  5GMB A;  1J85 A;  1VHK A;  4YQQ A;  3OIJ A;  2V3J A;  3N4K A;  3IEF A;  1UAM A;  1MXI A;  3BBE A;  4J3C A;  4YQP A;  4RG1 A;  4L69 A;  4YQR A;  4YQL A;  4XBO A;  2I6D A;  4CNG A;  1OY5 A;  4YVJ A;  4E8B A;  2EGW A;  4YQ7 A;  2EGV A;  4YQK A;  3AI9 X;  1UAJ A;  3L8U A;  4YQG A;  3KW2 A;  4CNF A;  4YVG A;  4YPZ A;  1V2X A;  1IPA A;  3ILK A;  3KY7 A;  4FAK A;  4YQT A;  4YQA A;  4YQ6 A;  4YQ1 A;  4YPY A;  3NK7 A;  2QWV A;  4YVI A;  4KGN A;  5FAI A;  4YQJ A;  3QUV A;  4MCC A;  4CND A;  3AXZ A;  4YQO A;  4YQ8 A;  4YQN A;  4YQ4 A;  1V6Z A;  2QMM A;  4MCD A;  1NS5 A;  4X3M A;  4H3Y A;  3KTY A;  3N4J A;  2HA8 A;  2YY8 A;  1X7O A;  3O7B A;  1O6D A;  4YPX A;  4JAK A;  1VHY A;  4KDZ A;  4YQ2 A;  5GM8 A;  3BBH A;  3IC6 A;  3KNU A;  3GYQ A;  3BBD A;  4YQS A;  4YQB A;  4CNE A;  2O3A A;  4YVK A;  4X3L A;  5CO4 A;  4YQI A;  5D9F A;  1NXZ A;  1Z85 A;  1TO0 A;  4YQD A;  3AIA A;  1X7P A;  4H3Z A;  1UAK A;  2CX8 A;  4YQ5 A;  2V3K A;  4YQ9 A;  1P9P A;  4JAL A;  3OII A;  1UAL A;  4YVH A; 
#chains in the Genus database with same CATH topology
 3NK6 A;  1VH0 A;  3OIN A;  4PZK A;  1K3R A;  4MCB A;  4YQC A;  3E5Y A;  2Z0Y A;  4YPW A;  3KOR A;  3DCM X;  1ZJR A;  2XDI A;  1GZ0 A;  3ONP A;  4FMW A;  4IG6 A;  4YQ3 A;  5GMC A;  4YQ0 A;  5GMB A;  1J85 A;  1VHK A;  4YQQ A;  3OIJ A;  2V3J A;  3N4K A;  3IEF A;  1UAM A;  1MXI A;  3FRW A;  3BBE A;  4J3C A;  4YQP A;  4RG1 A;  3SSX N;  1WRT R;  4L69 A;  4YQR A;  4YQL A;  4XBO A;  2I6D A;  4CNG A;  4JWF A;  1OY5 A;  4YVJ A;  4E8B A;  2EGW A;  4YQ7 A;  2EGV A;  4YQK A;  3G1C A;  1MI7 R;  3AI9 X;  1UAJ A;  3L8U A;  4YQG A;  3KW2 A;  4CNF A;  4YVG A;  4YPZ A;  1V2X A;  1IPA A;  3ILK A;  2OZ9 R;  3KY7 A;  4FAK A;  4YQT A;  4YQA A;  4YQ6 A;  4YQ1 A;  4JWG A;  4YPY A;  3NK7 A;  2QWV A;  4YVI A;  4KGN A;  5FAI A;  4YQJ A;  3QUV A;  4MCC A;  4JWH A;  4CND A;  3AXZ A;  4YQO A;  4YQ8 A;  4YQN A;  1ZT9 A;  4YQ4 A;  1V6Z A;  2QMM A;  4MCD A;  1NS5 A;  4X3M A;  4H3Y A;  3KTY A;  3N4J A;  2HA8 A;  2YY8 A;  1X7O A;  3O7B A;  1O6D A;  4YPX A;  4JAK A;  1VHY A;  4KDZ A;  4YQ2 A;  5GM8 A;  1CO0 A;  3BBH A;  3IC6 A;  3KNU A;  3GYQ A;  3BBD A;  4YQS A;  1TRR A;  4YQB A;  4CNE A;  1RCS A;  1TRO A;  2O3A A;  4YVK A;  4X3L A;  5CO4 A;  4YQI A;  5D9F A;  1NXZ A;  1Z85 A;  1TO0 A;  4YQD A;  3AIA A;  4H3Z A;  1X7P A;  1WRS R;  4JWJ A;  1UAK A;  2CX8 A;  1WRP R;  4YQ5 A;  2V3K A;  3WRP A;  3SSW N;  4YQ9 A;  1P9P A;  4JAL A;  1JHG A;  3OII A;  1UAL A;  4YVH A; 
#chains in the Genus database with same CATH homology
 3NK6 A;  1VH0 A;  3OIN A;  4PZK A;  1K3R A;  4MCB A;  4YQC A;  3E5Y A;  2Z0Y A;  4YPW A;  3DCM X;  1ZJR A;  1GZ0 A;  3ONP A;  4FMW A;  4IG6 A;  4YQ3 A;  5GMC A;  4YQ0 A;  5GMB A;  1J85 A;  1VHK A;  4YQQ A;  3OIJ A;  2V3J A;  3N4K A;  3IEF A;  1UAM A;  1MXI A;  3BBE A;  4J3C A;  4YQP A;  4RG1 A;  4L69 A;  4YQR A;  4YQL A;  4XBO A;  2I6D A;  4CNG A;  4JWF A;  1OY5 A;  4YVJ A;  4E8B A;  2EGW A;  4YQ7 A;  2EGV A;  4YQK A;  3AI9 X;  1UAJ A;  3L8U A;  4YQG A;  3KW2 A;  4CNF A;  4YVG A;  4YPZ A;  1V2X A;  1IPA A;  3ILK A;  3KY7 A;  4FAK A;  4YQT A;  4YQA A;  4YQ6 A;  4YQ1 A;  4JWG A;  4YPY A;  3NK7 A;  2QWV A;  4YVI A;  4KGN A;  5FAI A;  4YQJ A;  3QUV A;  4MCC A;  4JWH A;  4CND A;  3AXZ A;  4YQO A;  4YQ8 A;  4YQN A;  4YQ4 A;  1V6Z A;  2QMM A;  4MCD A;  1NS5 A;  4X3M A;  4H3Y A;  3KTY A;  3N4J A;  2HA8 A;  2YY8 A;  1X7O A;  3O7B A;  1O6D A;  4YPX A;  4JAK A;  1VHY A;  4KDZ A;  4YQ2 A;  5GM8 A;  3BBH A;  3IC6 A;  3KNU A;  3GYQ A;  3BBD A;  4YQS A;  4YQB A;  4CNE A;  2O3A A;  4YVK A;  4X3L A;  5CO4 A;  4YQI A;  5D9F A;  1NXZ A;  1Z85 A;  1TO0 A;  4YQD A;  3AIA A;  1X7P A;  4H3Z A;  4JWJ A;  1UAK A;  2CX8 A;  4YQ5 A;  2V3K A;  4YQ9 A;  1P9P A;  4JAL A;  3OII A;  1UAL A;  4YVH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...