4JWFA

Crystal structure of sptrm10(74)-sah complex
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
Knots found
sequence length
187
structure length
187
Chain Sequence
RIRLGKVVPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDEYIKITDRKILTVNQVFEILSLWLEYRDWEKAFMEVIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords tRNA (guanine(9)-N1)-methyltransferase
publication title Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate.
pubmed doi rcsb
source organism Schizosaccharomyces pombe
total genus 61
structure length 187
sequence length 187
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.221: tRNA (guanine(9)-N(1))-methyltransferase.
pdb deposition date 2013-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.30 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4jwfA00
4JWFA 4FMWA 4JWGA 4JWJA 4JWHA
chains in the Genus database with same CATH superfamily
1VHYA 4MCDA 3ONPA 1Z85A 1X7PA 1O6DA 4YQKA 4MCBA 4PZKA 1OY5A 4YQAA 4YQSA 3E5YA 2HA8A 4H3YA 2I6DA 4YQIA 4JWGA 1NS5A 3AI9X 4YQNA 1VH0A 3GYQA 3N4KA 4IG6A 1UAMA 3BBDA 2EGVA 4H3ZA 4YQ7A 4YQ5A 2EGWA 3KW2A 4KDZA 4YQJA 4JWFA 1TO0A 4YQ3A 2QMMA 2O3AA 3KTYA 3BBHA 1K3RA 1ZJRA 3NK7A 4FMWA 4JWJA 4CNEA 4YVKA 4MCCA 4FAKA 4YQOA 1J85A 4YQLA 3N4JA 1UALA 4CNGA 3IEFA 3BBEA 4JWHA 4YQQA 4RG1A 3KY7A 3OINA 3O7BA 4YVJA 4CNFA 4YPYA 3DCMX 4KGNA 2QWVA 4YQ1A 1P9PA 4YQ6A 5GM8A 3AIAA 2Z0YA 3ILKA 3QUVA 4CNDA 4YQPA 4YQGA 5GMBA 1NXZA 4YQTA 5D9FA 1UAJA 1GZ0A 4YQDA 1IPAA 3OIJA 4YQ4A 4YVGA 1X7OA 2CX8A 4X3MA 4YPZA 4YVHA 1VHKA 4JAKA 5FAIA 3L8UA 4E8BA 4YPWA 4YPXA 4JALA 4XBOA 4YQ8A 2YY8A 3NK6A 4YQ9A 3KNUA 4YQ2A 5CO4A 4YQRA 1V6ZA 3OIIA 2V3KA 4YQCA 2V3JA 1V2XA 3IC6A 1MXIA 4YVIA 1UAKA 4YQBA 4L69A 4X3LA 4YQ0A 4J3CA 5GMCA 3AXZA
chains in the Genus database with same CATH topology
1VHYA 4MCDA 3ONPA 1Z85A 1X7PA 1O6DA 4YQKA 4MCBA 4PZKA 1OY5A 4YQAA 4YQSA 3E5YA 2HA8A 4H3YA 2I6DA 4YQIA 4JWGA 1NS5A 3AI9X 4YQNA 1VH0A 3GYQA 3N4KA 4IG6A 1UAMA 3BBDA 2EGVA 4H3ZA 4YQ7A 4YQ5A 2EGWA 3KW2A 4KDZA 4YQJA 4JWFA 1TO0A 4YQ3A 2QMMA 2O3AA 3KTYA 3BBHA 1K3RA 1ZJRA 3NK7A 4FMWA 4JWJA 4CNEA 4YVKA 4MCCA 4FAKA 4YQOA 1J85A 4YQLA 3N4JA 1UALA 4CNGA 3IEFA 3BBEA 4JWHA 4YQQA 4RG1A 3KY7A 3OINA 3O7BA 4YVJA 4CNFA 4YPYA 3DCMX 4KGNA 2QWVA 4YQ1A 1P9PA 4YQ6A 5GM8A 3AIAA 2Z0YA 3ILKA 3QUVA 4CNDA 4YQPA 4YQGA 5GMBA 1NXZA 4YQTA 5D9FA 1UAJA 1GZ0A 4YQDA 1IPAA 3OIJA 4YQ4A 4YVGA 1X7OA 2CX8A 4X3MA 4YPZA 4YVHA 1VHKA 4JAKA 5FAIA 3L8UA 4E8BA 4YPWA 4YPXA 4JALA 4XBOA 4YQ8A 2YY8A 3NK6A 4YQ9A 3KNUA 4YQ2A 5CO4A 4YQRA 1V6ZA 3OIIA 2V3KA 4YQCA 2V3JA 1V2XA 3IC6A 1MXIA 4YVIA 1UAKA 4YQBA 4L69A 4X3LA 4YQ0A 4J3CA 5GMCA 3AXZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JWF A;  4FMW A;  4JWG A;  4JWJ A;  4JWH A; 
#chains in the Genus database with same CATH topology
 1VHY A;  4MCD A;  3ONP A;  1Z85 A;  1X7P A;  1O6D A;  4YQK A;  4MCB A;  4PZK A;  1OY5 A;  4YQA A;  4YQS A;  3E5Y A;  2HA8 A;  4H3Y A;  2I6D A;  4YQI A;  4JWG A;  1NS5 A;  3AI9 X;  4YQN A;  1VH0 A;  3GYQ A;  3N4K A;  4IG6 A;  1UAM A;  3BBD A;  2EGV A;  4H3Z A;  4YQ7 A;  4YQ5 A;  2EGW A;  3KW2 A;  4KDZ A;  4YQJ A;  4JWF A;  1TO0 A;  4YQ3 A;  2QMM A;  2O3A A;  3KTY A;  3BBH A;  1K3R A;  1ZJR A;  3NK7 A;  4FMW A;  4JWJ A;  4CNE A;  4YVK A;  4MCC A;  4FAK A;  4YQO A;  1J85 A;  4YQL A;  3N4J A;  1UAL A;  4CNG A;  3IEF A;  3BBE A;  4JWH A;  4YQQ A;  4RG1 A;  3KY7 A;  3OIN A;  3O7B A;  4YVJ A;  4CNF A;  4YPY A;  3DCM X;  4KGN A;  2QWV A;  4YQ1 A;  1P9P A;  4YQ6 A;  5GM8 A;  3AIA A;  2Z0Y A;  3ILK A;  3QUV A;  4CND A;  4YQP A;  4YQG A;  5GMB A;  1NXZ A;  4YQT A;  5D9F A;  1UAJ A;  1GZ0 A;  4YQD A;  1IPA A;  3OIJ A;  4YQ4 A;  4YVG A;  1X7O A;  2CX8 A;  4X3M A;  4YPZ A;  4YVH A;  1VHK A;  4JAK A;  5FAI A;  3L8U A;  4E8B A;  4YPW A;  4YPX A;  4JAL A;  4XBO A;  4YQ8 A;  2YY8 A;  3NK6 A;  4YQ9 A;  3KNU A;  4YQ2 A;  5CO4 A;  4YQR A;  1V6Z A;  3OII A;  2V3K A;  4YQC A;  2V3J A;  1V2X A;  3IC6 A;  1MXI A;  4YVI A;  1UAK A;  4YQB A;  4L69 A;  4X3L A;  4YQ0 A;  4J3C A;  5GMC A;  3AXZ A; 
#chains in the Genus database with same CATH homology
 1VHY A;  4MCD A;  3ONP A;  1Z85 A;  1X7P A;  1O6D A;  4YQK A;  4MCB A;  4PZK A;  1OY5 A;  4YQA A;  4YQS A;  3E5Y A;  2HA8 A;  4H3Y A;  2I6D A;  4YQI A;  4JWG A;  1NS5 A;  3AI9 X;  4YQN A;  1VH0 A;  3GYQ A;  3N4K A;  4IG6 A;  1UAM A;  3BBD A;  2EGV A;  4H3Z A;  4YQ7 A;  4YQ5 A;  2EGW A;  3KW2 A;  4KDZ A;  4YQJ A;  4JWF A;  1TO0 A;  4YQ3 A;  2QMM A;  2O3A A;  3KTY A;  3BBH A;  1K3R A;  1ZJR A;  3NK7 A;  4FMW A;  4JWJ A;  4CNE A;  4YVK A;  4MCC A;  4FAK A;  4YQO A;  1J85 A;  4YQL A;  3N4J A;  1UAL A;  4CNG A;  3IEF A;  3BBE A;  4JWH A;  4YQQ A;  4RG1 A;  3KY7 A;  3OIN A;  3O7B A;  4YVJ A;  4CNF A;  4YPY A;  3DCM X;  4KGN A;  2QWV A;  4YQ1 A;  1P9P A;  4YQ6 A;  5GM8 A;  3AIA A;  2Z0Y A;  3ILK A;  3QUV A;  4CND A;  4YQP A;  4YQG A;  5GMB A;  1NXZ A;  4YQT A;  5D9F A;  1UAJ A;  1GZ0 A;  4YQD A;  1IPA A;  3OIJ A;  4YQ4 A;  4YVG A;  1X7O A;  2CX8 A;  4X3M A;  4YPZ A;  4YVH A;  1VHK A;  4JAK A;  5FAI A;  3L8U A;  4E8B A;  4YPW A;  4YPX A;  4JAL A;  4XBO A;  4YQ8 A;  2YY8 A;  3NK6 A;  4YQ9 A;  3KNU A;  4YQ2 A;  5CO4 A;  4YQR A;  1V6Z A;  3OII A;  2V3K A;  4YQC A;  2V3J A;  1V2X A;  3IC6 A;  1MXI A;  4YVI A;  1UAK A;  4YQB A;  4L69 A;  4X3L A;  4YQ0 A;  4J3C A;  5GMC A;  3AXZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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