4JWHA

Crystal structure of sptrm10(full length)-sah complex
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
Knots found
sequence length
189
structure length
185
Chain Sequence
RIRLGKVVPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDEYIKKILTVNQVFEILSLWLEYRDWEKAFMEVIPKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords tRNA (guanine(9)-N1)-methyltransferase
publication title Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate.
pubmed doi rcsb
source organism Schizosaccharomyces pombe
total genus 62
structure length 185
sequence length 189
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.221: tRNA (guanine(9)-N(1))-methyltransferase.
pdb deposition date 2013-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.30 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4jwhA00
4JWHA 4JWGA 4JWFA 4FMWA 4JWJA
chains in the Genus database with same CATH superfamily
1P9PA 3KNUA 4CNEA 1NS5A 3KY7A 4YQCA 3OINA 1VHYA 4MCDA 2CX8A 1X7OA 4JALA 4YQ8A 4CNFA 4L69A 2O3AA 5GMBA 2EGWA 4J3CA 1V6ZA 2V3JA 1MXIA 4YQNA 3NK7A 4MCCA 4MCBA 3DCMX 3AI9X 3ONPA 4YQLA 4PZKA 4YQ2A 4CNGA 1UAKA 1UALA 3OIIA 4YQRA 1V2XA 4IG6A 4YQ3A 4YQOA 1K3RA 1OY5A 3E5YA 4YQQA 2HA8A 1VH0A 1O6DA 4JWGA 4YQBA 3N4JA 1VHKA 5GMCA 2EGVA 3AIAA 2I6DA 4YQJA 3GYQA 3ILKA 4YQ9A 4YVHA 4YQ0A 1IPAA 3L8UA 5D9FA 1UAMA 4JWFA 4YQDA 4YPXA 3NK6A 4E8BA 3N4KA 3AXZA 3BBDA 4H3YA 4YQ6A 1ZJRA 4JWJA 4X3LA 4XBOA 4JWHA 1Z85A 3O7BA 2QMMA 4CNDA 4YQIA 1X7PA 4YQ4A 5CO4A 4YQTA 3KTYA 1GZ0A 4YVKA 4YVIA 4JAKA 4YQ5A 4YQPA 4YQKA 4FAKA 3QUVA 4YQGA 4YPWA 4KDZA 4YQ1A 4YPZA 4YPYA 5GM8A 1TO0A 1UAJA 4YVJA 2Z0YA 3IEFA 2V3KA 4KGNA 5FAIA 4FMWA 3KW2A 2QWVA 3IC6A 4X3MA 3BBHA 1NXZA 4YVGA 1J85A 3OIJA 4H3ZA 4RG1A 2YY8A 4YQ7A 3BBEA 4YQAA 4YQSA
chains in the Genus database with same CATH topology
1P9PA 3KNUA 4CNEA 1NS5A 3KY7A 4YQCA 3OINA 1VHYA 4MCDA 2CX8A 1X7OA 4JALA 4YQ8A 4CNFA 4L69A 2O3AA 5GMBA 2EGWA 4J3CA 1V6ZA 2V3JA 1MXIA 4YQNA 3NK7A 4MCCA 4MCBA 3DCMX 3AI9X 3ONPA 4YQLA 4PZKA 4YQ2A 4CNGA 1UAKA 1UALA 3OIIA 4YQRA 1V2XA 4IG6A 4YQ3A 4YQOA 1K3RA 1OY5A 3E5YA 4YQQA 2HA8A 1VH0A 1O6DA 4JWGA 4YQBA 3N4JA 1VHKA 5GMCA 2EGVA 3AIAA 2I6DA 4YQJA 3GYQA 3ILKA 4YQ9A 4YVHA 4YQ0A 1IPAA 3L8UA 5D9FA 1UAMA 4JWFA 4YQDA 4YPXA 3NK6A 4E8BA 3N4KA 3AXZA 3BBDA 4H3YA 4YQ6A 1ZJRA 4JWJA 4X3LA 4XBOA 4JWHA 1Z85A 3O7BA 2QMMA 4CNDA 4YQIA 1X7PA 4YQ4A 5CO4A 4YQTA 3KTYA 1GZ0A 4YVKA 4YVIA 4JAKA 4YQ5A 4YQPA 4YQKA 4FAKA 3QUVA 4YQGA 4YPWA 4KDZA 4YQ1A 4YPZA 4YPYA 5GM8A 1TO0A 1UAJA 4YVJA 2Z0YA 3IEFA 2V3KA 4KGNA 5FAIA 4FMWA 3KW2A 2QWVA 3IC6A 4X3MA 3BBHA 1NXZA 4YVGA 1J85A 3OIJA 4H3ZA 4RG1A 2YY8A 4YQ7A 3BBEA 4YQAA 4YQSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JWH A;  4JWG A;  4JWF A;  4FMW A;  4JWJ A; 
#chains in the Genus database with same CATH topology
 1P9P A;  3KNU A;  4CNE A;  1NS5 A;  3KY7 A;  4YQC A;  3OIN A;  1VHY A;  4MCD A;  2CX8 A;  1X7O A;  4JAL A;  4YQ8 A;  4CNF A;  4L69 A;  2O3A A;  5GMB A;  2EGW A;  4J3C A;  1V6Z A;  2V3J A;  1MXI A;  4YQN A;  3NK7 A;  4MCC A;  4MCB A;  3DCM X;  3AI9 X;  3ONP A;  4YQL A;  4PZK A;  4YQ2 A;  4CNG A;  1UAK A;  1UAL A;  3OII A;  4YQR A;  1V2X A;  4IG6 A;  4YQ3 A;  4YQO A;  1K3R A;  1OY5 A;  3E5Y A;  4YQQ A;  2HA8 A;  1VH0 A;  1O6D A;  4JWG A;  4YQB A;  3N4J A;  1VHK A;  5GMC A;  2EGV A;  3AIA A;  2I6D A;  4YQJ A;  3GYQ A;  3ILK A;  4YQ9 A;  4YVH A;  4YQ0 A;  1IPA A;  3L8U A;  5D9F A;  1UAM A;  4JWF A;  4YQD A;  4YPX A;  3NK6 A;  4E8B A;  3N4K A;  3AXZ A;  3BBD A;  4H3Y A;  4YQ6 A;  1ZJR A;  4JWJ A;  4X3L A;  4XBO A;  4JWH A;  1Z85 A;  3O7B A;  2QMM A;  4CND A;  4YQI A;  1X7P A;  4YQ4 A;  5CO4 A;  4YQT A;  3KTY A;  1GZ0 A;  4YVK A;  4YVI A;  4JAK A;  4YQ5 A;  4YQP A;  4YQK A;  4FAK A;  3QUV A;  4YQG A;  4YPW A;  4KDZ A;  4YQ1 A;  4YPZ A;  4YPY A;  5GM8 A;  1TO0 A;  1UAJ A;  4YVJ A;  2Z0Y A;  3IEF A;  2V3K A;  4KGN A;  5FAI A;  4FMW A;  3KW2 A;  2QWV A;  3IC6 A;  4X3M A;  3BBH A;  1NXZ A;  4YVG A;  1J85 A;  3OIJ A;  4H3Z A;  4RG1 A;  2YY8 A;  4YQ7 A;  3BBE A;  4YQA A;  4YQS A; 
#chains in the Genus database with same CATH homology
 1P9P A;  3KNU A;  4CNE A;  1NS5 A;  3KY7 A;  4YQC A;  3OIN A;  1VHY A;  4MCD A;  2CX8 A;  1X7O A;  4JAL A;  4YQ8 A;  4CNF A;  4L69 A;  2O3A A;  5GMB A;  2EGW A;  4J3C A;  1V6Z A;  2V3J A;  1MXI A;  4YQN A;  3NK7 A;  4MCC A;  4MCB A;  3DCM X;  3AI9 X;  3ONP A;  4YQL A;  4PZK A;  4YQ2 A;  4CNG A;  1UAK A;  1UAL A;  3OII A;  4YQR A;  1V2X A;  4IG6 A;  4YQ3 A;  4YQO A;  1K3R A;  1OY5 A;  3E5Y A;  4YQQ A;  2HA8 A;  1VH0 A;  1O6D A;  4JWG A;  4YQB A;  3N4J A;  1VHK A;  5GMC A;  2EGV A;  3AIA A;  2I6D A;  4YQJ A;  3GYQ A;  3ILK A;  4YQ9 A;  4YVH A;  4YQ0 A;  1IPA A;  3L8U A;  5D9F A;  1UAM A;  4JWF A;  4YQD A;  4YPX A;  3NK6 A;  4E8B A;  3N4K A;  3AXZ A;  3BBD A;  4H3Y A;  4YQ6 A;  1ZJR A;  4JWJ A;  4X3L A;  4XBO A;  4JWH A;  1Z85 A;  3O7B A;  2QMM A;  4CND A;  4YQI A;  1X7P A;  4YQ4 A;  5CO4 A;  4YQT A;  3KTY A;  1GZ0 A;  4YVK A;  4YVI A;  4JAK A;  4YQ5 A;  4YQP A;  4YQK A;  4FAK A;  3QUV A;  4YQG A;  4YPW A;  4KDZ A;  4YQ1 A;  4YPZ A;  4YPY A;  5GM8 A;  1TO0 A;  1UAJ A;  4YVJ A;  2Z0Y A;  3IEF A;  2V3K A;  4KGN A;  5FAI A;  4FMW A;  3KW2 A;  2QWV A;  3IC6 A;  4X3M A;  3BBH A;  1NXZ A;  4YVG A;  1J85 A;  3OIJ A;  4H3Z A;  4RG1 A;  2YY8 A;  4YQ7 A;  3BBE A;  4YQA A;  4YQS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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