4KAVA

Crystal structure of the soluble domain of lipooligosaccharide phosphoethanolamine transferase a from neisseria meningitidis
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
Knots found
sequence length
334
structure length
333
Chain Sequence
SNIPYTQLDMAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSCGTSAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords YhbX/YhjW/YijP/YjdB family protein
publication title The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) Required for Resistance to Polymyxin.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 122
structure length 333
sequence length 334
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.27: Phosphatidylglycerophosphatase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kavA00
2W8SA 4KM4A 1HJKA 1KHKA 3MK0A 4UOOA 1ALJA 2GLQA 3LXQA 4GTWA 3WAXA 5LRNA 1HQAA 4LR7A 1FSUA 5KXAA 1ALKA 4UPHA 1AJAA 3DPCA 3NKPA 4LRAA 3IGZB 5L0EA 3T02A 3TX0A 4YR1A 1N2LA 3T00A 2X98A 5DLTA 1SHQA 1E3CP 3A52A 3UN5A 4GTYA 4LRDA 4LR9A 1AJCA 1E33P 1KHNA 2W5SA 4FDJA 3OT9A 3T01A 2QZUA 1EW9A 3MK2A 4LRBA 1EW8A 2IFYA 4CXSA 1E2SP 1Y6VA 2XR9A 2D1GA 3M8WA 4GTZA 4UOPA 2W5WA 3SZZA 1KH7A 5DLVA 3CMRA 1O98A 2GSNA 1ED8A 5L0BA 3SZYA 1ALIA 4NWJA 1ZEFA 4N7TA 4CXKA 3WAYA 1E1ZP 5K4PA 3BDGA 4UORA 1K7HA 1KHJA 5IJQA 1ANJA 4MIVA 5IJSA 5LQQA 2W5QA 4FDIA 5GRRA 5GOVA 2G9YA 3DYCA 1KH5A 1URBA 3BDFA 3M8ZA 2IUCA 2GA3A 1HDHA 2VQRA 3UNYA 1B8JA 2W5RA 5L0KA 1EI6A 4UPLA 3TG0A 4LR8A 4ZG7A 4LQYA 1ANIA 3NKMA 4CXUA 4CYSA 1ZEBA 1P49A 1KHLA 1URAA 4CYRA 3E2DA 3ED4A 3UO0A 1ELXA 1ALHA 4LRCA 3NKOA 4MY4A 1Y7AA 1O99A 1ELYA 2RH6A 4NWXA 4TN0A 3IDDA 3NKRA 1KH4A 3KD8A 3UN3A 5DLWA 1ED9A 4GTXA 1EW2A 2W8DA 5EGHA 1KH9A 1EJJA 3IGYB 4ZGAA 1AJDA 3NKNA 1AJBA 2GSUA 5EGEA 5HRTA 3NVLA 5INHA 4LREA 4LRFA 4ZG6A 4B56A 4KJDA 3UN2A 3NKQA 3TWZA 1ELZA 4ZG9A 4KAVA 3MK1A 5TJ3A 3WBHA 4MHXA 1AUKA 2W5TA 2GSOA 2ZKTA 4LR2A 5LIAA 3Q3QA 2W5XA 3WAVA 1SHNA 1EQJA 3BDGB 5C66A 4UPIA 1ZEDA 3BDHA 3WAWA 2XRGA 4UPKA 3M8YA 3M7VA 1N2KA 2W5VA 4KJGA 4KAYA 5AJ9A 3B5QA 5LRMA 2ANHA 4QAXA 2IUCB
chains in the Genus database with same CATH superfamily
2W8SA 4KM4A 1HJKA 1KHKA 3MK0A 4UOOA 1ALJA 2GLQA 3LXQA 4GTWA 3WAXA 5LRNA 1HQAA 4LR7A 1FSUA 5KXAA 1ALKA 4UPHA 1AJAA 3DPCA 3NKPA 4LRAA 3IGZB 5L0EA 3T02A 3TX0A 4YR1A 1N2LA 3T00A 2X98A 5DLTA 1SHQA 1E3CP 3A52A 3UN5A 4GTYA 4LRDA 4LR9A 1AJCA 1E33P 1KHNA 2W5SA 4FDJA 3OT9A 3T01A 2QZUA 1EW9A 3MK2A 4LRBA 1EW8A 2IFYA 4CXSA 1E2SP 1Y6VA 2XR9A 2D1GA 3M8WA 4GTZA 4UOPA 2W5WA 3SZZA 1KH7A 5DLVA 3CMRA 1O98A 2GSNA 1ED8A 5L0BA 3SZYA 1ALIA 4NWJA 1ZEFA 4N7TA 4CXKA 3WAYA 1E1ZP 5K4PA 3BDGA 4UORA 1K7HA 1KHJA 5IJQA 1ANJA 4MIVA 5IJSA 5LQQA 2W5QA 4FDIA 5GRRA 5GOVA 2G9YA 3DYCA 1KH5A 1URBA 3BDFA 3M8ZA 2IUCA 2GA3A 1HDHA 2VQRA 3UNYA 1B8JA 2W5RA 5L0KA 1EI6A 4UPLA 3TG0A 4LR8A 4ZG7A 4LQYA 1ANIA 3NKMA 4CXUA 4CYSA 1ZEBA 1P49A 1KHLA 1URAA 4CYRA 3E2DA 3ED4A 3UO0A 1ELXA 1ALHA 4LRCA 3NKOA 4MY4A 1Y7AA 1O99A 1ELYA 2RH6A 4NWXA 4TN0A 3IDDA 3NKRA 1KH4A 3KD8A 3UN3A 5DLWA 1ED9A 4GTXA 1EW2A 2W8DA 5EGHA 1KH9A 1EJJA 3IGYB 4ZGAA 1AJDA 3NKNA 1AJBA 2GSUA 5EGEA 5HRTA 3NVLA 5INHA 4LREA 4LRFA 4ZG6A 4B56A 4KJDA 3UN2A 3NKQA 3TWZA 1ELZA 4ZG9A 4KAVA 3MK1A 5TJ3A 3WBHA 4MHXA 1AUKA 2W5TA 2GSOA 2ZKTA 4LR2A 5LIAA 3Q3QA 2W5XA 3WAVA 1SHNA 1EQJA 3BDGB 5C66A 4UPIA 1ZEDA 3BDHA 3WAWA 2XRGA 4UPKA 3M8YA 3M7VA 1N2KA 2W5VA 4KJGA 4KAYA 5AJ9A 3B5QA 5LRMA 2ANHA 4QAXA 2IUCB
chains in the Genus database with same CATH topology
2W8SA 4KM4A 1HJKA 1KHKA 3MK0A 4UOOA 1ALJA 2GLQA 3LXQA 4GTWA 3WAXA 5LRNA 1HQAA 4LR7A 1FSUA 5KXAA 1ALKA 4UPHA 1AJAA 3DPCA 3NKPA 4LRAA 3IGZB 5L0EA 3T02A 3TX0A 4YR1A 1N2LA 3T00A 2X98A 5DLTA 1SHQA 1E3CP 3A52A 3UN5A 4GTYA 4LRDA 4LR9A 1AJCA 1E33P 1KHNA 2W5SA 4FDJA 3OT9A 3T01A 2QZUA 1EW9A 3MK2A 4LRBA 1EW8A 2IFYA 4CXSA 1E2SP 1Y6VA 2XR9A 2D1GA 3M8WA 4GTZA 4UOPA 2W5WA 3SZZA 1KH7A 5DLVA 3CMRA 1O98A 2GSNA 1ED8A 5L0BA 3SZYA 1ALIA 4NWJA 1ZEFA 4N7TA 4CXKA 3WAYA 1E1ZP 5K4PA 3BDGA 4UORA 1K7HA 1KHJA 5IJQA 1ANJA 4MIVA 5IJSA 5LQQA 2W5QA 4FDIA 5GRRA 5GOVA 2G9YA 3DYCA 1KH5A 1URBA 3BDFA 3M8ZA 2IUCA 2GA3A 1HDHA 2VQRA 3UNYA 1B8JA 2W5RA 5L0KA 1EI6A 4UPLA 3TG0A 4LR8A 4ZG7A 4LQYA 1ANIA 3NKMA 4CXUA 4CYSA 1ZEBA 1P49A 1KHLA 1URAA 4CYRA 3E2DA 3ED4A 3UO0A 1ELXA 1ALHA 4LRCA 3NKOA 4MY4A 1Y7AA 1O99A 1ELYA 2RH6A 4NWXA 4TN0A 3IDDA 3NKRA 1KH4A 3KD8A 3UN3A 5DLWA 1ED9A 4GTXA 1EW2A 2W8DA 5EGHA 1KH9A 1EJJA 3IGYB 4ZGAA 1AJDA 3NKNA 1AJBA 2GSUA 5EGEA 5HRTA 3NVLA 5INHA 4LREA 4LRFA 4ZG6A 4B56A 4KJDA 3UN2A 3NKQA 3TWZA 1ELZA 4ZG9A 4KAVA 3MK1A 5TJ3A 3WBHA 4MHXA 1AUKA 2W5TA 2GSOA 2ZKTA 4LR2A 5LIAA 3Q3QA 2W5XA 3WAVA 1SHNA 1EQJA 3BDGB 5C66A 4UPIA 1ZEDA 3BDHA 3WAWA 2XRGA 4UPKA 3M8YA 3M7VA 1N2KA 2W5VA 4KJGA 4KAYA 5AJ9A 3B5QA 5LRMA 2ANHA 4QAXA 2IUCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W8S A;  4KM4 A;  1HJK A;  1KHK A;  3MK0 A;  4UOO A;  1ALJ A;  2GLQ A;  3LXQ A;  4GTW A;  3WAX A;  5LRN A;  1HQA A;  4LR7 A;  1FSU A;  5KXA A;  1ALK A;  4UPH A;  1AJA A;  3DPC A;  3NKP A;  4LRA A;  3IGZ B;  5L0E A;  3T02 A;  3TX0 A;  4YR1 A;  1N2L A;  3T00 A;  2X98 A;  5DLT A;  1SHQ A;  1E3C P;  3A52 A;  3UN5 A;  4GTY A;  4LRD A;  4LR9 A;  1AJC A;  1E33 P;  1KHN A;  2W5S A;  4FDJ A;  3OT9 A;  3T01 A;  2QZU A;  1EW9 A;  3MK2 A;  4LRB A;  1EW8 A;  2IFY A;  4CXS A;  1E2S P;  1Y6V A;  2XR9 A;  2D1G A;  3M8W A;  4GTZ A;  4UOP A;  2W5W A;  3SZZ A;  1KH7 A;  5DLV A;  3CMR A;  1O98 A;  2GSN A;  1ED8 A;  5L0B A;  3SZY A;  1ALI A;  4NWJ A;  1ZEF A;  4N7T A;  4CXK A;  3WAY A;  1E1Z P;  5K4P A;  3BDG A;  4UOR A;  1K7H A;  1KHJ A;  5IJQ A;  1ANJ A;  4MIV A;  5IJS A;  5LQQ A;  2W5Q A;  4FDI A;  5GRR A;  5GOV A;  2G9Y A;  3DYC A;  1KH5 A;  1URB A;  3BDF A;  3M8Z A;  2IUC A;  2GA3 A;  1HDH A;  2VQR A;  3UNY A;  1B8J A;  2W5R A;  5L0K A;  1EI6 A;  4UPL A;  3TG0 A;  4LR8 A;  4ZG7 A;  4LQY A;  1ANI A;  3NKM A;  4CXU A;  4CYS A;  1ZEB A;  1P49 A;  1KHL A;  1URA A;  4CYR A;  3E2D A;  3ED4 A;  3UO0 A;  1ELX A;  1ALH A;  4LRC A;  3NKO A;  4MY4 A;  1Y7A A;  1O99 A;  1ELY A;  2RH6 A;  4NWX A;  4TN0 A;  3IDD A;  3NKR A;  1KH4 A;  3KD8 A;  3UN3 A;  5DLW A;  1ED9 A;  4GTX A;  1EW2 A;  2W8D A;  5EGH A;  1KH9 A;  1EJJ A;  3IGY B;  4ZGA A;  1AJD A;  3NKN A;  1AJB A;  2GSU A;  5EGE A;  5HRT A;  3NVL A;  5INH A;  4LRE A;  4LRF A;  4ZG6 A;  4B56 A;  4KJD A;  3UN2 A;  3NKQ A;  3TWZ A;  1ELZ A;  4ZG9 A;  4KAV A;  3MK1 A;  5TJ3 A;  3WBH A;  4MHX A;  1AUK A;  2W5T A;  2GSO A;  2ZKT A;  4LR2 A;  5LIA A;  3Q3Q A;  2W5X A;  3WAV A;  1SHN A;  1EQJ A;  3BDG B;  5C66 A;  4UPI A;  1ZED A;  3BDH A;  3WAW A;  2XRG A;  4UPK A;  3M8Y A;  3M7V A;  1N2K A;  2W5V A;  4KJG A;  4KAY A;  5AJ9 A;  3B5Q A;  5LRM A;  2ANH A;  4QAX A;  2IUC B; 
#chains in the Genus database with same CATH topology
 2W8S A;  4KM4 A;  1HJK A;  1KHK A;  3MK0 A;  4UOO A;  1ALJ A;  2GLQ A;  3LXQ A;  4GTW A;  3WAX A;  5LRN A;  1HQA A;  4LR7 A;  1FSU A;  5KXA A;  1ALK A;  4UPH A;  1AJA A;  3DPC A;  3NKP A;  4LRA A;  3IGZ B;  5L0E A;  3T02 A;  3TX0 A;  4YR1 A;  1N2L A;  3T00 A;  2X98 A;  5DLT A;  1SHQ A;  1E3C P;  3A52 A;  3UN5 A;  4GTY A;  4LRD A;  4LR9 A;  1AJC A;  1E33 P;  1KHN A;  2W5S A;  4FDJ A;  3OT9 A;  3T01 A;  2QZU A;  1EW9 A;  3MK2 A;  4LRB A;  1EW8 A;  2IFY A;  4CXS A;  1E2S P;  1Y6V A;  2XR9 A;  2D1G A;  3M8W A;  4GTZ A;  4UOP A;  2W5W A;  3SZZ A;  1KH7 A;  5DLV A;  3CMR A;  1O98 A;  2GSN A;  1ED8 A;  5L0B A;  3SZY A;  1ALI A;  4NWJ A;  1ZEF A;  4N7T A;  4CXK A;  3WAY A;  1E1Z P;  5K4P A;  3BDG A;  4UOR A;  1K7H A;  1KHJ A;  5IJQ A;  1ANJ A;  4MIV A;  5IJS A;  5LQQ A;  2W5Q A;  4FDI A;  5GRR A;  5GOV A;  2G9Y A;  3DYC A;  1KH5 A;  1URB A;  3BDF A;  3M8Z A;  2IUC A;  2GA3 A;  1HDH A;  2VQR A;  3UNY A;  1B8J A;  2W5R A;  5L0K A;  1EI6 A;  4UPL A;  3TG0 A;  4LR8 A;  4ZG7 A;  4LQY A;  1ANI A;  3NKM A;  4CXU A;  4CYS A;  1ZEB A;  1P49 A;  1KHL A;  1URA A;  4CYR A;  3E2D A;  3ED4 A;  3UO0 A;  1ELX A;  1ALH A;  4LRC A;  3NKO A;  4MY4 A;  1Y7A A;  1O99 A;  1ELY A;  2RH6 A;  4NWX A;  4TN0 A;  3IDD A;  3NKR A;  1KH4 A;  3KD8 A;  3UN3 A;  5DLW A;  1ED9 A;  4GTX A;  1EW2 A;  2W8D A;  5EGH A;  1KH9 A;  1EJJ A;  3IGY B;  4ZGA A;  1AJD A;  3NKN A;  1AJB A;  2GSU A;  5EGE A;  5HRT A;  3NVL A;  5INH A;  4LRE A;  4LRF A;  4ZG6 A;  4B56 A;  4KJD A;  3UN2 A;  3NKQ A;  3TWZ A;  1ELZ A;  4ZG9 A;  4KAV A;  3MK1 A;  5TJ3 A;  3WBH A;  4MHX A;  1AUK A;  2W5T A;  2GSO A;  2ZKT A;  4LR2 A;  5LIA A;  3Q3Q A;  2W5X A;  3WAV A;  1SHN A;  1EQJ A;  3BDG B;  5C66 A;  4UPI A;  1ZED A;  3BDH A;  3WAW A;  2XRG A;  4UPK A;  3M8Y A;  3M7V A;  1N2K A;  2W5V A;  4KJG A;  4KAY A;  5AJ9 A;  3B5Q A;  5LRM A;  2ANH A;  4QAX A;  2IUC B; 
#chains in the Genus database with same CATH homology
 2W8S A;  4KM4 A;  1HJK A;  1KHK A;  3MK0 A;  4UOO A;  1ALJ A;  2GLQ A;  3LXQ A;  4GTW A;  3WAX A;  5LRN A;  1HQA A;  4LR7 A;  1FSU A;  5KXA A;  1ALK A;  4UPH A;  1AJA A;  3DPC A;  3NKP A;  4LRA A;  3IGZ B;  5L0E A;  3T02 A;  3TX0 A;  4YR1 A;  1N2L A;  3T00 A;  2X98 A;  5DLT A;  1SHQ A;  1E3C P;  3A52 A;  3UN5 A;  4GTY A;  4LRD A;  4LR9 A;  1AJC A;  1E33 P;  1KHN A;  2W5S A;  4FDJ A;  3OT9 A;  3T01 A;  2QZU A;  1EW9 A;  3MK2 A;  4LRB A;  1EW8 A;  2IFY A;  4CXS A;  1E2S P;  1Y6V A;  2XR9 A;  2D1G A;  3M8W A;  4GTZ A;  4UOP A;  2W5W A;  3SZZ A;  1KH7 A;  5DLV A;  3CMR A;  1O98 A;  2GSN A;  1ED8 A;  5L0B A;  3SZY A;  1ALI A;  4NWJ A;  1ZEF A;  4N7T A;  4CXK A;  3WAY A;  1E1Z P;  5K4P A;  3BDG A;  4UOR A;  1K7H A;  1KHJ A;  5IJQ A;  1ANJ A;  4MIV A;  5IJS A;  5LQQ A;  2W5Q A;  4FDI A;  5GRR A;  5GOV A;  2G9Y A;  3DYC A;  1KH5 A;  1URB A;  3BDF A;  3M8Z A;  2IUC A;  2GA3 A;  1HDH A;  2VQR A;  3UNY A;  1B8J A;  2W5R A;  5L0K A;  1EI6 A;  4UPL A;  3TG0 A;  4LR8 A;  4ZG7 A;  4LQY A;  1ANI A;  3NKM A;  4CXU A;  4CYS A;  1ZEB A;  1P49 A;  1KHL A;  1URA A;  4CYR A;  3E2D A;  3ED4 A;  3UO0 A;  1ELX A;  1ALH A;  4LRC A;  3NKO A;  4MY4 A;  1Y7A A;  1O99 A;  1ELY A;  2RH6 A;  4NWX A;  4TN0 A;  3IDD A;  3NKR A;  1KH4 A;  3KD8 A;  3UN3 A;  5DLW A;  1ED9 A;  4GTX A;  1EW2 A;  2W8D A;  5EGH A;  1KH9 A;  1EJJ A;  3IGY B;  4ZGA A;  1AJD A;  3NKN A;  1AJB A;  2GSU A;  5EGE A;  5HRT A;  3NVL A;  5INH A;  4LRE A;  4LRF A;  4ZG6 A;  4B56 A;  4KJD A;  3UN2 A;  3NKQ A;  3TWZ A;  1ELZ A;  4ZG9 A;  4KAV A;  3MK1 A;  5TJ3 A;  3WBH A;  4MHX A;  1AUK A;  2W5T A;  2GSO A;  2ZKT A;  4LR2 A;  5LIA A;  3Q3Q A;  2W5X A;  3WAV A;  1SHN A;  1EQJ A;  3BDG B;  5C66 A;  4UPI A;  1ZED A;  3BDH A;  3WAW A;  2XRG A;  4UPK A;  3M8Y A;  3M7V A;  1N2K A;  2W5V A;  4KJG A;  4KAY A;  5AJ9 A;  3B5Q A;  5LRM A;  2ANH A;  4QAX A;  2IUC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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