4KAYA

Structure of the soluble domain of lipooligosaccharide phosphoethanolamine transferase a from neisseria meningitidis - complex with zn
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
Knots found
sequence length
333
structure length
331
Chain Sequence
NIPYTQLDMAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSCGTSAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords YhbX/YhjW/YijP/YjdB family protein
publication title The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) Required for Resistance to Polymyxin.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 121
structure length 331
sequence length 333
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.27: Phosphatidylglycerophosphatase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kayA00
5LIAA 1HDHA 4ZG6A 4LRFA 5EGHA 5HRTA 4MIVA 5K4PA 1ELXA 2ZKTA 1ALKA 2XR9A 3NKNA 1ELZA 1ALJA 3MK2A 3M8WA 4KJDA 1N2KA 3KD8A 5GRRA 4LRAA 4UPLA 1O99A 1K7HA 2X98A 3UO0A 2W5SA 4LRDA 1ED9A 1EI6A 5AJ9A 5LRNA 3WAWA 3UNYA 2GSOA 1ZEFA 3BDFA 3E2DA 1AUKA 4CXKA 4UOOA 5L0EA 4UPKA 3B5QA 4QAXA 1KHNA 2RH6A 4LR8A 2W5RA 3ED4A 1AJAA 3T00A 4GTWA 3NKOA 5IJQA 3A52A 5GOVA 5IJSA 1URBA 3CMRA 3Q3QA 1ANIA 4ZGAA 4KAVA 3DYCA 1O98A 4N7TA 3WBHA 1ED8A 3OT9A 3NKPA 3WAYA 2GSUA 2GSNA 1Y7AA 2W8DA 2W8SA 1KH4A 4MHXA 4CYRA 2IUCB 3NVLA 4ZG9A 4KJGA 4UORA 1E3CP 1Y6VA 4LQYA 2G9YA 3M8YA 1E1ZP 4CXUA 3TWZA 2VQRA 3LXQA 3TX0A 3NKMA 4GTYA 3BDGB 1ELYA 3DPCA 3M7VA 4NWJA 1SHNA 5DLTA 4LRCA 2IFYA 1KHJA 1KHLA 5KXAA 2XRGA 1E2SP 3MK1A 2W5TA 3WAXA 4KAYA 4TN0A 1EW8A 4GTZA 1HQAA 1KH5A 1URAA 4GTXA 3UN5A 3TG0A 1E33P 2GLQA 4MY4A 4NWXA 2W5QA 4LR9A 3SZZA 4FDIA 1B8JA 5DLWA 1ZEDA 1AJBA 4B56A 1EQJA 1EJJA 2GA3A 5C66A 4UOPA 3SZYA 2IUCA 3BDHA 4CXSA 2W5WA 3IGYB 3NKRA 1ALIA 1EW9A 1ALHA 1KH7A 1ANJA 3MK0A 4UPIA 5LQQA 3IGZB 4LR2A 3UN2A 4LRBA 2W5VA 3BDGA 1AJCA 5L0BA 5EGEA 4LREA 1ZEBA 3T01A 4KM4A 1AJDA 2QZUA 1SHQA 3M8ZA 1N2LA 1P49A 3UN3A 1FSUA 1KHKA 1KH9A 4FDJA 5DLVA 5LRMA 4UPHA 3IDDA 2W5XA 5TJ3A 4YR1A 1EW2A 5INHA 2ANHA 2D1GA 5L0KA 3WAVA 4ZG7A 3NKQA 4LR7A 4CYSA 1HJKA 3T02A
chains in the Genus database with same CATH superfamily
5LIAA 1HDHA 4ZG6A 4LRFA 5EGHA 5HRTA 4MIVA 5K4PA 1ELXA 2ZKTA 1ALKA 2XR9A 3NKNA 1ELZA 1ALJA 3MK2A 3M8WA 4KJDA 1N2KA 3KD8A 5GRRA 4LRAA 4UPLA 1O99A 1K7HA 2X98A 3UO0A 2W5SA 4LRDA 1ED9A 1EI6A 5AJ9A 5LRNA 3WAWA 3UNYA 2GSOA 1ZEFA 3BDFA 3E2DA 1AUKA 4CXKA 4UOOA 5L0EA 4UPKA 3B5QA 4QAXA 1KHNA 2RH6A 4LR8A 2W5RA 3ED4A 1AJAA 3T00A 4GTWA 3NKOA 5IJQA 3A52A 5GOVA 5IJSA 1URBA 3CMRA 3Q3QA 1ANIA 4ZGAA 4KAVA 3DYCA 1O98A 4N7TA 3WBHA 1ED8A 3OT9A 3NKPA 3WAYA 2GSUA 2GSNA 1Y7AA 2W8DA 2W8SA 1KH4A 4MHXA 4CYRA 2IUCB 3NVLA 4ZG9A 4KJGA 4UORA 1E3CP 1Y6VA 4LQYA 2G9YA 3M8YA 1E1ZP 4CXUA 3TWZA 2VQRA 3LXQA 3TX0A 3NKMA 4GTYA 3BDGB 1ELYA 3DPCA 3M7VA 4NWJA 1SHNA 5DLTA 4LRCA 2IFYA 1KHJA 1KHLA 5KXAA 2XRGA 1E2SP 3MK1A 2W5TA 3WAXA 4KAYA 4TN0A 1EW8A 4GTZA 1HQAA 1KH5A 1URAA 4GTXA 3UN5A 3TG0A 1E33P 2GLQA 4MY4A 4NWXA 2W5QA 4LR9A 3SZZA 4FDIA 1B8JA 5DLWA 1ZEDA 1AJBA 4B56A 1EQJA 1EJJA 2GA3A 5C66A 4UOPA 3SZYA 2IUCA 3BDHA 4CXSA 2W5WA 3IGYB 3NKRA 1ALIA 1EW9A 1ALHA 1KH7A 1ANJA 3MK0A 4UPIA 5LQQA 3IGZB 4LR2A 3UN2A 4LRBA 2W5VA 3BDGA 1AJCA 5L0BA 5EGEA 4LREA 1ZEBA 3T01A 4KM4A 1AJDA 2QZUA 1SHQA 3M8ZA 1N2LA 1P49A 3UN3A 1FSUA 1KHKA 1KH9A 4FDJA 5DLVA 5LRMA 4UPHA 3IDDA 2W5XA 5TJ3A 4YR1A 1EW2A 5INHA 2ANHA 2D1GA 5L0KA 3WAVA 4ZG7A 3NKQA 4LR7A 4CYSA 1HJKA 3T02A
chains in the Genus database with same CATH topology
5LIAA 1HDHA 4ZG6A 4LRFA 5EGHA 5HRTA 4MIVA 5K4PA 1ELXA 2ZKTA 1ALKA 2XR9A 3NKNA 1ELZA 1ALJA 3MK2A 3M8WA 4KJDA 1N2KA 3KD8A 5GRRA 4LRAA 4UPLA 1O99A 1K7HA 2X98A 3UO0A 2W5SA 4LRDA 1ED9A 1EI6A 5AJ9A 5LRNA 3WAWA 3UNYA 2GSOA 1ZEFA 3BDFA 3E2DA 1AUKA 4CXKA 4UOOA 5L0EA 4UPKA 3B5QA 4QAXA 1KHNA 2RH6A 4LR8A 2W5RA 3ED4A 1AJAA 3T00A 4GTWA 3NKOA 5IJQA 3A52A 5GOVA 5IJSA 1URBA 3CMRA 3Q3QA 1ANIA 4ZGAA 4KAVA 3DYCA 1O98A 4N7TA 3WBHA 1ED8A 3OT9A 3NKPA 3WAYA 2GSUA 2GSNA 1Y7AA 2W8DA 2W8SA 1KH4A 4MHXA 4CYRA 2IUCB 3NVLA 4ZG9A 4KJGA 4UORA 1E3CP 1Y6VA 4LQYA 2G9YA 3M8YA 1E1ZP 4CXUA 3TWZA 2VQRA 3LXQA 3TX0A 3NKMA 4GTYA 3BDGB 1ELYA 3DPCA 3M7VA 4NWJA 1SHNA 5DLTA 4LRCA 2IFYA 1KHJA 1KHLA 5KXAA 2XRGA 1E2SP 3MK1A 2W5TA 3WAXA 4KAYA 4TN0A 1EW8A 4GTZA 1HQAA 1KH5A 1URAA 4GTXA 3UN5A 3TG0A 1E33P 2GLQA 4MY4A 4NWXA 2W5QA 4LR9A 3SZZA 4FDIA 1B8JA 5DLWA 1ZEDA 1AJBA 4B56A 1EQJA 1EJJA 2GA3A 5C66A 4UOPA 3SZYA 2IUCA 3BDHA 4CXSA 2W5WA 3IGYB 3NKRA 1ALIA 1EW9A 1ALHA 1KH7A 1ANJA 3MK0A 4UPIA 5LQQA 3IGZB 4LR2A 3UN2A 4LRBA 2W5VA 3BDGA 1AJCA 5L0BA 5EGEA 4LREA 1ZEBA 3T01A 4KM4A 1AJDA 2QZUA 1SHQA 3M8ZA 1N2LA 1P49A 3UN3A 1FSUA 1KHKA 1KH9A 4FDJA 5DLVA 5LRMA 4UPHA 3IDDA 2W5XA 5TJ3A 4YR1A 1EW2A 5INHA 2ANHA 2D1GA 5L0KA 3WAVA 4ZG7A 3NKQA 4LR7A 4CYSA 1HJKA 3T02A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LIA A;  1HDH A;  4ZG6 A;  4LRF A;  5EGH A;  5HRT A;  4MIV A;  5K4P A;  1ELX A;  2ZKT A;  1ALK A;  2XR9 A;  3NKN A;  1ELZ A;  1ALJ A;  3MK2 A;  3M8W A;  4KJD A;  1N2K A;  3KD8 A;  5GRR A;  4LRA A;  4UPL A;  1O99 A;  1K7H A;  2X98 A;  3UO0 A;  2W5S A;  4LRD A;  1ED9 A;  1EI6 A;  5AJ9 A;  5LRN A;  3WAW A;  3UNY A;  2GSO A;  1ZEF A;  3BDF A;  3E2D A;  1AUK A;  4CXK A;  4UOO A;  5L0E A;  4UPK A;  3B5Q A;  4QAX A;  1KHN A;  2RH6 A;  4LR8 A;  2W5R A;  3ED4 A;  1AJA A;  3T00 A;  4GTW A;  3NKO A;  5IJQ A;  3A52 A;  5GOV A;  5IJS A;  1URB A;  3CMR A;  3Q3Q A;  1ANI A;  4ZGA A;  4KAV A;  3DYC A;  1O98 A;  4N7T A;  3WBH A;  1ED8 A;  3OT9 A;  3NKP A;  3WAY A;  2GSU A;  2GSN A;  1Y7A A;  2W8D A;  2W8S A;  1KH4 A;  4MHX A;  4CYR A;  2IUC B;  3NVL A;  4ZG9 A;  4KJG A;  4UOR A;  1E3C P;  1Y6V A;  4LQY A;  2G9Y A;  3M8Y A;  1E1Z P;  4CXU A;  3TWZ A;  2VQR A;  3LXQ A;  3TX0 A;  3NKM A;  4GTY A;  3BDG B;  1ELY A;  3DPC A;  3M7V A;  4NWJ A;  1SHN A;  5DLT A;  4LRC A;  2IFY A;  1KHJ A;  1KHL A;  5KXA A;  2XRG A;  1E2S P;  3MK1 A;  2W5T A;  3WAX A;  4KAY A;  4TN0 A;  1EW8 A;  4GTZ A;  1HQA A;  1KH5 A;  1URA A;  4GTX A;  3UN5 A;  3TG0 A;  1E33 P;  2GLQ A;  4MY4 A;  4NWX A;  2W5Q A;  4LR9 A;  3SZZ A;  4FDI A;  1B8J A;  5DLW A;  1ZED A;  1AJB A;  4B56 A;  1EQJ A;  1EJJ A;  2GA3 A;  5C66 A;  4UOP A;  3SZY A;  2IUC A;  3BDH A;  4CXS A;  2W5W A;  3IGY B;  3NKR A;  1ALI A;  1EW9 A;  1ALH A;  1KH7 A;  1ANJ A;  3MK0 A;  4UPI A;  5LQQ A;  3IGZ B;  4LR2 A;  3UN2 A;  4LRB A;  2W5V A;  3BDG A;  1AJC A;  5L0B A;  5EGE A;  4LRE A;  1ZEB A;  3T01 A;  4KM4 A;  1AJD A;  2QZU A;  1SHQ A;  3M8Z A;  1N2L A;  1P49 A;  3UN3 A;  1FSU A;  1KHK A;  1KH9 A;  4FDJ A;  5DLV A;  5LRM A;  4UPH A;  3IDD A;  2W5X A;  5TJ3 A;  4YR1 A;  1EW2 A;  5INH A;  2ANH A;  2D1G A;  5L0K A;  3WAV A;  4ZG7 A;  3NKQ A;  4LR7 A;  4CYS A;  1HJK A;  3T02 A; 
#chains in the Genus database with same CATH topology
 5LIA A;  1HDH A;  4ZG6 A;  4LRF A;  5EGH A;  5HRT A;  4MIV A;  5K4P A;  1ELX A;  2ZKT A;  1ALK A;  2XR9 A;  3NKN A;  1ELZ A;  1ALJ A;  3MK2 A;  3M8W A;  4KJD A;  1N2K A;  3KD8 A;  5GRR A;  4LRA A;  4UPL A;  1O99 A;  1K7H A;  2X98 A;  3UO0 A;  2W5S A;  4LRD A;  1ED9 A;  1EI6 A;  5AJ9 A;  5LRN A;  3WAW A;  3UNY A;  2GSO A;  1ZEF A;  3BDF A;  3E2D A;  1AUK A;  4CXK A;  4UOO A;  5L0E A;  4UPK A;  3B5Q A;  4QAX A;  1KHN A;  2RH6 A;  4LR8 A;  2W5R A;  3ED4 A;  1AJA A;  3T00 A;  4GTW A;  3NKO A;  5IJQ A;  3A52 A;  5GOV A;  5IJS A;  1URB A;  3CMR A;  3Q3Q A;  1ANI A;  4ZGA A;  4KAV A;  3DYC A;  1O98 A;  4N7T A;  3WBH A;  1ED8 A;  3OT9 A;  3NKP A;  3WAY A;  2GSU A;  2GSN A;  1Y7A A;  2W8D A;  2W8S A;  1KH4 A;  4MHX A;  4CYR A;  2IUC B;  3NVL A;  4ZG9 A;  4KJG A;  4UOR A;  1E3C P;  1Y6V A;  4LQY A;  2G9Y A;  3M8Y A;  1E1Z P;  4CXU A;  3TWZ A;  2VQR A;  3LXQ A;  3TX0 A;  3NKM A;  4GTY A;  3BDG B;  1ELY A;  3DPC A;  3M7V A;  4NWJ A;  1SHN A;  5DLT A;  4LRC A;  2IFY A;  1KHJ A;  1KHL A;  5KXA A;  2XRG A;  1E2S P;  3MK1 A;  2W5T A;  3WAX A;  4KAY A;  4TN0 A;  1EW8 A;  4GTZ A;  1HQA A;  1KH5 A;  1URA A;  4GTX A;  3UN5 A;  3TG0 A;  1E33 P;  2GLQ A;  4MY4 A;  4NWX A;  2W5Q A;  4LR9 A;  3SZZ A;  4FDI A;  1B8J A;  5DLW A;  1ZED A;  1AJB A;  4B56 A;  1EQJ A;  1EJJ A;  2GA3 A;  5C66 A;  4UOP A;  3SZY A;  2IUC A;  3BDH A;  4CXS A;  2W5W A;  3IGY B;  3NKR A;  1ALI A;  1EW9 A;  1ALH A;  1KH7 A;  1ANJ A;  3MK0 A;  4UPI A;  5LQQ A;  3IGZ B;  4LR2 A;  3UN2 A;  4LRB A;  2W5V A;  3BDG A;  1AJC A;  5L0B A;  5EGE A;  4LRE A;  1ZEB A;  3T01 A;  4KM4 A;  1AJD A;  2QZU A;  1SHQ A;  3M8Z A;  1N2L A;  1P49 A;  3UN3 A;  1FSU A;  1KHK A;  1KH9 A;  4FDJ A;  5DLV A;  5LRM A;  4UPH A;  3IDD A;  2W5X A;  5TJ3 A;  4YR1 A;  1EW2 A;  5INH A;  2ANH A;  2D1G A;  5L0K A;  3WAV A;  4ZG7 A;  3NKQ A;  4LR7 A;  4CYS A;  1HJK A;  3T02 A; 
#chains in the Genus database with same CATH homology
 5LIA A;  1HDH A;  4ZG6 A;  4LRF A;  5EGH A;  5HRT A;  4MIV A;  5K4P A;  1ELX A;  2ZKT A;  1ALK A;  2XR9 A;  3NKN A;  1ELZ A;  1ALJ A;  3MK2 A;  3M8W A;  4KJD A;  1N2K A;  3KD8 A;  5GRR A;  4LRA A;  4UPL A;  1O99 A;  1K7H A;  2X98 A;  3UO0 A;  2W5S A;  4LRD A;  1ED9 A;  1EI6 A;  5AJ9 A;  5LRN A;  3WAW A;  3UNY A;  2GSO A;  1ZEF A;  3BDF A;  3E2D A;  1AUK A;  4CXK A;  4UOO A;  5L0E A;  4UPK A;  3B5Q A;  4QAX A;  1KHN A;  2RH6 A;  4LR8 A;  2W5R A;  3ED4 A;  1AJA A;  3T00 A;  4GTW A;  3NKO A;  5IJQ A;  3A52 A;  5GOV A;  5IJS A;  1URB A;  3CMR A;  3Q3Q A;  1ANI A;  4ZGA A;  4KAV A;  3DYC A;  1O98 A;  4N7T A;  3WBH A;  1ED8 A;  3OT9 A;  3NKP A;  3WAY A;  2GSU A;  2GSN A;  1Y7A A;  2W8D A;  2W8S A;  1KH4 A;  4MHX A;  4CYR A;  2IUC B;  3NVL A;  4ZG9 A;  4KJG A;  4UOR A;  1E3C P;  1Y6V A;  4LQY A;  2G9Y A;  3M8Y A;  1E1Z P;  4CXU A;  3TWZ A;  2VQR A;  3LXQ A;  3TX0 A;  3NKM A;  4GTY A;  3BDG B;  1ELY A;  3DPC A;  3M7V A;  4NWJ A;  1SHN A;  5DLT A;  4LRC A;  2IFY A;  1KHJ A;  1KHL A;  5KXA A;  2XRG A;  1E2S P;  3MK1 A;  2W5T A;  3WAX A;  4KAY A;  4TN0 A;  1EW8 A;  4GTZ A;  1HQA A;  1KH5 A;  1URA A;  4GTX A;  3UN5 A;  3TG0 A;  1E33 P;  2GLQ A;  4MY4 A;  4NWX A;  2W5Q A;  4LR9 A;  3SZZ A;  4FDI A;  1B8J A;  5DLW A;  1ZED A;  1AJB A;  4B56 A;  1EQJ A;  1EJJ A;  2GA3 A;  5C66 A;  4UOP A;  3SZY A;  2IUC A;  3BDH A;  4CXS A;  2W5W A;  3IGY B;  3NKR A;  1ALI A;  1EW9 A;  1ALH A;  1KH7 A;  1ANJ A;  3MK0 A;  4UPI A;  5LQQ A;  3IGZ B;  4LR2 A;  3UN2 A;  4LRB A;  2W5V A;  3BDG A;  1AJC A;  5L0B A;  5EGE A;  4LRE A;  1ZEB A;  3T01 A;  4KM4 A;  1AJD A;  2QZU A;  1SHQ A;  3M8Z A;  1N2L A;  1P49 A;  3UN3 A;  1FSU A;  1KHK A;  1KH9 A;  4FDJ A;  5DLV A;  5LRM A;  4UPH A;  3IDD A;  2W5X A;  5TJ3 A;  4YR1 A;  1EW2 A;  5INH A;  2ANH A;  2D1G A;  5L0K A;  3WAV A;  4ZG7 A;  3NKQ A;  4LR7 A;  4CYS A;  1HJK A;  3T02 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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