4KJDA

Ratintestinal ap expressed in e. coli
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
Knots found
sequence length
478
structure length
407
Chain Sequence
VEEENPVFWNQKAKEALDVAKKLQPIQTSAKNLILFLGDGMGVPTVTATRILKGQLGGHLGPETPLAMDHFPFTALSKTYNVDRQVPDAGTATAYLCGVKANYKTIGVSAAARFNQCNSTFGNEVFSVMHRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRDWYSDADMPSSALQEGCKDIATQLISNMDIDVILGGGRKFMFPKGTPDPEYPGDSDQSGVRLDSRNLVEEWLAKYQGTRYVWNREQLMQASQDPAVTRLMGLFEPTEMKYDVNRNASADPSLAEMTEVAVRLLSRNPQGFYLFVEGGRIDQGHTAYLALTEAVMFDSAIEKASQLTNEKDTLTLITADHSHVTLRHGGEDVAIFARGPQAHLVHGVQEQNYIAHVMAFAGCLEPYTDCGLAPPAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Intestinal-type alkaline phosphatase 1
publication title Crystal structure of rat intestinal alkaline phosphatase - Role of crown domain in mammalian alkaline phosphatases.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 148
structure length 407
sequence length 478
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2013-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kjdA00
2IUCB 4ZG9A 1KH5A 4CXKA 5C66A 3T01A 1URAA 3IGZB 3M8WA 1KH9A 1E2SP 4TN0A 1P49A 5DLWA 1HQAA 1ALHA 1EJJA 4CYSA 4LREA 3UN2A 3UN3A 5HRTA 3T02A 4ZG6A 4LR9A 1KHNA 4LR8A 4UPHA 3E2DA 5AJ9A 2RH6A 3SZYA 3NKMA 4LRAA 4MHXA 1AUKA 4FDJA 1AJDA 4KJGA 3BDGA 1Y7AA 3UN5A 1SHNA 3BDHA 5LRNA 4MIVA 1E33P 3NKOA 5LRMA 3BDGB 1O98A 5EGEA 1ALKA 1EI6A 2ANHA 4NWJA 1ELYA 4CXSA 3T00A 3UNYA 2W5WA 1EQJA 4LRBA 5DLTA 5INHA 3SZZA 1ZEBA 2W5VA 2W8SA 2G9YA 4FDIA 1AJCA 1KH7A 3NKRA 3WBHA 4UPKA 1SHQA 1KH4A 3M8ZA 1O99A 4GTXA 3IDDA 5L0BA 2GSNA 3WAVA 2W5QA 3MK0A 4MY4A 3NKNA 1KHJA 3NVLA 5LQQA 4LRDA 1ELZA 2XRGA 4ZGAA 1AJAA 2GSOA 5KXAA 3OT9A 1Y6VA 4NWXA 5GOVA 1KHKA 3IGYB 4LRFA 5IJSA 3M8YA 3B5QA 4GTWA 1EW8A 1ALJA 2GSUA 4LRCA 3A52A 2W8DA 4KAYA 2QZUA 5EGHA 1KHLA 3Q3QA 4CXUA 4GTZA 2GA3A 3NKPA 2W5TA 4UOPA 3ED4A 4KJDA 5IJQA 5DLVA 1ZEFA 1HJKA 1K7HA 1ANJA 3DYCA 4GTYA 3WAYA 4LR2A 4LQYA 2IFYA 3M7VA 4UPIA 5K4PA 3TX0A 3WAWA 1ED8A 4LR7A 5GRRA 2GLQA 2W5XA 3UO0A 4YR1A 3LXQA 2VQRA 1URBA 5L0KA 1ALIA 3DPCA 3WAXA 1ANIA 4UORA 4N7TA 4ZG7A 5L0EA 3BDFA 1ED9A 3MK2A 1ZEDA 4UPLA 3CMRA 4B56A 4UOOA 4KAVA 4QAXA 4KM4A 1E3CP 5TJ3A 2W5RA 1FSUA 1AJBA 2XR9A 3TWZA 3TG0A 4CYRA 2X98A 1E1ZP 3KD8A 2W5SA 1N2KA 2D1GA 5LIAA 1N2LA 3MK1A 2IUCA 3NKQA 1HDHA 1EW2A 1EW9A 1B8JA 1ELXA 2ZKTA
chains in the Genus database with same CATH superfamily
2IUCB 4ZG9A 1KH5A 4CXKA 5C66A 3T01A 1URAA 3IGZB 3M8WA 1KH9A 1E2SP 4TN0A 1P49A 5DLWA 1HQAA 1ALHA 1EJJA 4CYSA 4LREA 3UN2A 3UN3A 5HRTA 3T02A 4ZG6A 4LR9A 1KHNA 4LR8A 4UPHA 3E2DA 5AJ9A 2RH6A 3SZYA 3NKMA 4LRAA 4MHXA 1AUKA 4FDJA 1AJDA 4KJGA 3BDGA 1Y7AA 3UN5A 1SHNA 3BDHA 5LRNA 4MIVA 1E33P 3NKOA 5LRMA 3BDGB 1O98A 5EGEA 1ALKA 1EI6A 2ANHA 4NWJA 1ELYA 4CXSA 3T00A 3UNYA 2W5WA 1EQJA 4LRBA 5DLTA 5INHA 3SZZA 1ZEBA 2W5VA 2W8SA 2G9YA 4FDIA 1AJCA 1KH7A 3NKRA 3WBHA 4UPKA 1SHQA 1KH4A 3M8ZA 1O99A 4GTXA 3IDDA 5L0BA 2GSNA 3WAVA 2W5QA 3MK0A 4MY4A 3NKNA 1KHJA 3NVLA 5LQQA 4LRDA 1ELZA 2XRGA 4ZGAA 1AJAA 2GSOA 5KXAA 3OT9A 1Y6VA 4NWXA 5GOVA 1KHKA 3IGYB 4LRFA 5IJSA 3M8YA 3B5QA 4GTWA 1EW8A 1ALJA 2GSUA 4LRCA 3A52A 2W8DA 4KAYA 2QZUA 5EGHA 1KHLA 3Q3QA 4CXUA 4GTZA 2GA3A 3NKPA 2W5TA 4UOPA 3ED4A 4KJDA 5IJQA 5DLVA 1ZEFA 1HJKA 1K7HA 1ANJA 3DYCA 4GTYA 3WAYA 4LR2A 4LQYA 2IFYA 3M7VA 4UPIA 5K4PA 3TX0A 3WAWA 1ED8A 4LR7A 5GRRA 2GLQA 2W5XA 3UO0A 4YR1A 3LXQA 2VQRA 1URBA 5L0KA 1ALIA 3DPCA 3WAXA 1ANIA 4UORA 4N7TA 4ZG7A 5L0EA 3BDFA 1ED9A 3MK2A 1ZEDA 4UPLA 3CMRA 4B56A 4UOOA 4KAVA 4QAXA 4KM4A 1E3CP 5TJ3A 2W5RA 1FSUA 1AJBA 2XR9A 3TWZA 3TG0A 4CYRA 2X98A 1E1ZP 3KD8A 2W5SA 1N2KA 2D1GA 5LIAA 1N2LA 3MK1A 2IUCA 3NKQA 1HDHA 1EW2A 1EW9A 1B8JA 1ELXA 2ZKTA
chains in the Genus database with same CATH topology
2IUCB 4ZG9A 1KH5A 4CXKA 5C66A 3T01A 1URAA 3IGZB 3M8WA 1KH9A 1E2SP 4TN0A 1P49A 5DLWA 1HQAA 1ALHA 1EJJA 4CYSA 4LREA 3UN2A 3UN3A 5HRTA 3T02A 4ZG6A 4LR9A 1KHNA 4LR8A 4UPHA 3E2DA 5AJ9A 2RH6A 3SZYA 3NKMA 4LRAA 4MHXA 1AUKA 4FDJA 1AJDA 4KJGA 3BDGA 1Y7AA 3UN5A 1SHNA 3BDHA 5LRNA 4MIVA 1E33P 3NKOA 5LRMA 3BDGB 1O98A 5EGEA 1ALKA 1EI6A 2ANHA 4NWJA 1ELYA 4CXSA 3T00A 3UNYA 2W5WA 1EQJA 4LRBA 5DLTA 5INHA 3SZZA 1ZEBA 2W5VA 2W8SA 2G9YA 4FDIA 1AJCA 1KH7A 3NKRA 3WBHA 4UPKA 1SHQA 1KH4A 3M8ZA 1O99A 4GTXA 3IDDA 5L0BA 2GSNA 3WAVA 2W5QA 3MK0A 4MY4A 3NKNA 1KHJA 3NVLA 5LQQA 4LRDA 1ELZA 2XRGA 4ZGAA 1AJAA 2GSOA 5KXAA 3OT9A 1Y6VA 4NWXA 5GOVA 1KHKA 3IGYB 4LRFA 5IJSA 3M8YA 3B5QA 4GTWA 1EW8A 1ALJA 2GSUA 4LRCA 3A52A 2W8DA 4KAYA 2QZUA 5EGHA 1KHLA 3Q3QA 4CXUA 4GTZA 2GA3A 3NKPA 2W5TA 4UOPA 3ED4A 4KJDA 5IJQA 5DLVA 1ZEFA 1HJKA 1K7HA 1ANJA 3DYCA 4GTYA 3WAYA 4LR2A 4LQYA 2IFYA 3M7VA 4UPIA 5K4PA 3TX0A 3WAWA 1ED8A 4LR7A 5GRRA 2GLQA 2W5XA 3UO0A 4YR1A 3LXQA 2VQRA 1URBA 5L0KA 1ALIA 3DPCA 3WAXA 1ANIA 4UORA 4N7TA 4ZG7A 5L0EA 3BDFA 1ED9A 3MK2A 1ZEDA 4UPLA 3CMRA 4B56A 4UOOA 4KAVA 4QAXA 4KM4A 1E3CP 5TJ3A 2W5RA 1FSUA 1AJBA 2XR9A 3TWZA 3TG0A 4CYRA 2X98A 1E1ZP 3KD8A 2W5SA 1N2KA 2D1GA 5LIAA 1N2LA 3MK1A 2IUCA 3NKQA 1HDHA 1EW2A 1EW9A 1B8JA 1ELXA 2ZKTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IUC B;  4ZG9 A;  1KH5 A;  4CXK A;  5C66 A;  3T01 A;  1URA A;  3IGZ B;  3M8W A;  1KH9 A;  1E2S P;  4TN0 A;  1P49 A;  5DLW A;  1HQA A;  1ALH A;  1EJJ A;  4CYS A;  4LRE A;  3UN2 A;  3UN3 A;  5HRT A;  3T02 A;  4ZG6 A;  4LR9 A;  1KHN A;  4LR8 A;  4UPH A;  3E2D A;  5AJ9 A;  2RH6 A;  3SZY A;  3NKM A;  4LRA A;  4MHX A;  1AUK A;  4FDJ A;  1AJD A;  4KJG A;  3BDG A;  1Y7A A;  3UN5 A;  1SHN A;  3BDH A;  5LRN A;  4MIV A;  1E33 P;  3NKO A;  5LRM A;  3BDG B;  1O98 A;  5EGE A;  1ALK A;  1EI6 A;  2ANH A;  4NWJ A;  1ELY A;  4CXS A;  3T00 A;  3UNY A;  2W5W A;  1EQJ A;  4LRB A;  5DLT A;  5INH A;  3SZZ A;  1ZEB A;  2W5V A;  2W8S A;  2G9Y A;  4FDI A;  1AJC A;  1KH7 A;  3NKR A;  3WBH A;  4UPK A;  1SHQ A;  1KH4 A;  3M8Z A;  1O99 A;  4GTX A;  3IDD A;  5L0B A;  2GSN A;  3WAV A;  2W5Q A;  3MK0 A;  4MY4 A;  3NKN A;  1KHJ A;  3NVL A;  5LQQ A;  4LRD A;  1ELZ A;  2XRG A;  4ZGA A;  1AJA A;  2GSO A;  5KXA A;  3OT9 A;  1Y6V A;  4NWX A;  5GOV A;  1KHK A;  3IGY B;  4LRF A;  5IJS A;  3M8Y A;  3B5Q A;  4GTW A;  1EW8 A;  1ALJ A;  2GSU A;  4LRC A;  3A52 A;  2W8D A;  4KAY A;  2QZU A;  5EGH A;  1KHL A;  3Q3Q A;  4CXU A;  4GTZ A;  2GA3 A;  3NKP A;  2W5T A;  4UOP A;  3ED4 A;  4KJD A;  5IJQ A;  5DLV A;  1ZEF A;  1HJK A;  1K7H A;  1ANJ A;  3DYC A;  4GTY A;  3WAY A;  4LR2 A;  4LQY A;  2IFY A;  3M7V A;  4UPI A;  5K4P A;  3TX0 A;  3WAW A;  1ED8 A;  4LR7 A;  5GRR A;  2GLQ A;  2W5X A;  3UO0 A;  4YR1 A;  3LXQ A;  2VQR A;  1URB A;  5L0K A;  1ALI A;  3DPC A;  3WAX A;  1ANI A;  4UOR A;  4N7T A;  4ZG7 A;  5L0E A;  3BDF A;  1ED9 A;  3MK2 A;  1ZED A;  4UPL A;  3CMR A;  4B56 A;  4UOO A;  4KAV A;  4QAX A;  4KM4 A;  1E3C P;  5TJ3 A;  2W5R A;  1FSU A;  1AJB A;  2XR9 A;  3TWZ A;  3TG0 A;  4CYR A;  2X98 A;  1E1Z P;  3KD8 A;  2W5S A;  1N2K A;  2D1G A;  5LIA A;  1N2L A;  3MK1 A;  2IUC A;  3NKQ A;  1HDH A;  1EW2 A;  1EW9 A;  1B8J A;  1ELX A;  2ZKT A; 
#chains in the Genus database with same CATH topology
 2IUC B;  4ZG9 A;  1KH5 A;  4CXK A;  5C66 A;  3T01 A;  1URA A;  3IGZ B;  3M8W A;  1KH9 A;  1E2S P;  4TN0 A;  1P49 A;  5DLW A;  1HQA A;  1ALH A;  1EJJ A;  4CYS A;  4LRE A;  3UN2 A;  3UN3 A;  5HRT A;  3T02 A;  4ZG6 A;  4LR9 A;  1KHN A;  4LR8 A;  4UPH A;  3E2D A;  5AJ9 A;  2RH6 A;  3SZY A;  3NKM A;  4LRA A;  4MHX A;  1AUK A;  4FDJ A;  1AJD A;  4KJG A;  3BDG A;  1Y7A A;  3UN5 A;  1SHN A;  3BDH A;  5LRN A;  4MIV A;  1E33 P;  3NKO A;  5LRM A;  3BDG B;  1O98 A;  5EGE A;  1ALK A;  1EI6 A;  2ANH A;  4NWJ A;  1ELY A;  4CXS A;  3T00 A;  3UNY A;  2W5W A;  1EQJ A;  4LRB A;  5DLT A;  5INH A;  3SZZ A;  1ZEB A;  2W5V A;  2W8S A;  2G9Y A;  4FDI A;  1AJC A;  1KH7 A;  3NKR A;  3WBH A;  4UPK A;  1SHQ A;  1KH4 A;  3M8Z A;  1O99 A;  4GTX A;  3IDD A;  5L0B A;  2GSN A;  3WAV A;  2W5Q A;  3MK0 A;  4MY4 A;  3NKN A;  1KHJ A;  3NVL A;  5LQQ A;  4LRD A;  1ELZ A;  2XRG A;  4ZGA A;  1AJA A;  2GSO A;  5KXA A;  3OT9 A;  1Y6V A;  4NWX A;  5GOV A;  1KHK A;  3IGY B;  4LRF A;  5IJS A;  3M8Y A;  3B5Q A;  4GTW A;  1EW8 A;  1ALJ A;  2GSU A;  4LRC A;  3A52 A;  2W8D A;  4KAY A;  2QZU A;  5EGH A;  1KHL A;  3Q3Q A;  4CXU A;  4GTZ A;  2GA3 A;  3NKP A;  2W5T A;  4UOP A;  3ED4 A;  4KJD A;  5IJQ A;  5DLV A;  1ZEF A;  1HJK A;  1K7H A;  1ANJ A;  3DYC A;  4GTY A;  3WAY A;  4LR2 A;  4LQY A;  2IFY A;  3M7V A;  4UPI A;  5K4P A;  3TX0 A;  3WAW A;  1ED8 A;  4LR7 A;  5GRR A;  2GLQ A;  2W5X A;  3UO0 A;  4YR1 A;  3LXQ A;  2VQR A;  1URB A;  5L0K A;  1ALI A;  3DPC A;  3WAX A;  1ANI A;  4UOR A;  4N7T A;  4ZG7 A;  5L0E A;  3BDF A;  1ED9 A;  3MK2 A;  1ZED A;  4UPL A;  3CMR A;  4B56 A;  4UOO A;  4KAV A;  4QAX A;  4KM4 A;  1E3C P;  5TJ3 A;  2W5R A;  1FSU A;  1AJB A;  2XR9 A;  3TWZ A;  3TG0 A;  4CYR A;  2X98 A;  1E1Z P;  3KD8 A;  2W5S A;  1N2K A;  2D1G A;  5LIA A;  1N2L A;  3MK1 A;  2IUC A;  3NKQ A;  1HDH A;  1EW2 A;  1EW9 A;  1B8J A;  1ELX A;  2ZKT A; 
#chains in the Genus database with same CATH homology
 2IUC B;  4ZG9 A;  1KH5 A;  4CXK A;  5C66 A;  3T01 A;  1URA A;  3IGZ B;  3M8W A;  1KH9 A;  1E2S P;  4TN0 A;  1P49 A;  5DLW A;  1HQA A;  1ALH A;  1EJJ A;  4CYS A;  4LRE A;  3UN2 A;  3UN3 A;  5HRT A;  3T02 A;  4ZG6 A;  4LR9 A;  1KHN A;  4LR8 A;  4UPH A;  3E2D A;  5AJ9 A;  2RH6 A;  3SZY A;  3NKM A;  4LRA A;  4MHX A;  1AUK A;  4FDJ A;  1AJD A;  4KJG A;  3BDG A;  1Y7A A;  3UN5 A;  1SHN A;  3BDH A;  5LRN A;  4MIV A;  1E33 P;  3NKO A;  5LRM A;  3BDG B;  1O98 A;  5EGE A;  1ALK A;  1EI6 A;  2ANH A;  4NWJ A;  1ELY A;  4CXS A;  3T00 A;  3UNY A;  2W5W A;  1EQJ A;  4LRB A;  5DLT A;  5INH A;  3SZZ A;  1ZEB A;  2W5V A;  2W8S A;  2G9Y A;  4FDI A;  1AJC A;  1KH7 A;  3NKR A;  3WBH A;  4UPK A;  1SHQ A;  1KH4 A;  3M8Z A;  1O99 A;  4GTX A;  3IDD A;  5L0B A;  2GSN A;  3WAV A;  2W5Q A;  3MK0 A;  4MY4 A;  3NKN A;  1KHJ A;  3NVL A;  5LQQ A;  4LRD A;  1ELZ A;  2XRG A;  4ZGA A;  1AJA A;  2GSO A;  5KXA A;  3OT9 A;  1Y6V A;  4NWX A;  5GOV A;  1KHK A;  3IGY B;  4LRF A;  5IJS A;  3M8Y A;  3B5Q A;  4GTW A;  1EW8 A;  1ALJ A;  2GSU A;  4LRC A;  3A52 A;  2W8D A;  4KAY A;  2QZU A;  5EGH A;  1KHL A;  3Q3Q A;  4CXU A;  4GTZ A;  2GA3 A;  3NKP A;  2W5T A;  4UOP A;  3ED4 A;  4KJD A;  5IJQ A;  5DLV A;  1ZEF A;  1HJK A;  1K7H A;  1ANJ A;  3DYC A;  4GTY A;  3WAY A;  4LR2 A;  4LQY A;  2IFY A;  3M7V A;  4UPI A;  5K4P A;  3TX0 A;  3WAW A;  1ED8 A;  4LR7 A;  5GRR A;  2GLQ A;  2W5X A;  3UO0 A;  4YR1 A;  3LXQ A;  2VQR A;  1URB A;  5L0K A;  1ALI A;  3DPC A;  3WAX A;  1ANI A;  4UOR A;  4N7T A;  4ZG7 A;  5L0E A;  3BDF A;  1ED9 A;  3MK2 A;  1ZED A;  4UPL A;  3CMR A;  4B56 A;  4UOO A;  4KAV A;  4QAX A;  4KM4 A;  1E3C P;  5TJ3 A;  2W5R A;  1FSU A;  1AJB A;  2XR9 A;  3TWZ A;  3TG0 A;  4CYR A;  2X98 A;  1E1Z P;  3KD8 A;  2W5S A;  1N2K A;  2D1G A;  5LIA A;  1N2L A;  3MK1 A;  2IUC A;  3NKQ A;  1HDH A;  1EW2 A;  1EW9 A;  1B8J A;  1ELX A;  2ZKT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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