4KWF | Genus

Total Genus 174

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	174
sequence length	494
structure length	494
Chain Sequence	AVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d006a9e3211b37b140fe885/pdb.gz

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The Resolver thinks Pdb

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Time for openFile(/file/5d006a9e3211b37b140fe885/pdb.gz): 1932 ms

reading 494 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

494 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 32 ms

Adding embedded #jmolscript: select ({0:493});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase/inhibitor
source organism	Homo sapiens
publication title	Development of selective inhibitors for aldehyde dehydrogenases based on substituted indole-2,3-diones. pubmed doi rcsb
molecule keywords	Aldehyde dehydrogenase, mitochondrial
total genus	174
structure length	494
sequence length	494
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature	ec 1.2.1.3: Aldehyde dehydrogenase (NAD(+)).
pdb deposition date	2013-05-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00171	Aldedh	Aldehyde dehydrogenase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase; Chain A, domain 2	Aldehyde Dehydrogenase; Chain A, domain 2	4kwfA02
3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase; Chain A, domain 1	Aldehyde Dehydrogenase; Chain A, domain 1	4kwfA01

1A4ZA 4MPBA 4I8PA 1WNDA 4LIHA 1A4SA 2BHQA 3PQAA 1O9JA 4ZXUA 4ZZ7A 5L13A 1UXNA 2H5GA 1O04A 2ESDA 5KLMA 4ZVYA 3INJA 3SZBA 1NZXA 1WNBA 4OE4A 5EZ4A 4K57A 4I3WA 4I25A 4QJEA 4YWUA 2EIWA 4OE5A 4PXLA 2ONPA 4QF6A 4QYJA 4X0TA 3V4CA 1UXVA 4KWFA 4ITBA 4H7NA 4IDMA 3TY7A 4C3SA 5F2CA 4I8QA 3RHMA 4KNAA 3V9HA 2EJ6A 4CAZA 3PRLA 5EXFA 3VZ2A 4WJ9A 5EKCA 5KLKA 3RHPA 2ONOA 4IT9A 4NMJA 2EJLA 5JRYA 3B4WA 4CBBA 2QE0A 4ZWLA 3INLA 4JBEA 3EK1A 4V37A 3RHJA 2EUHA 4FR8A 3N80A 4I26A 4ZULA 4DNGA 3IWJA 4H80A 4QN2A 4PXNA 4V3FC 1O02A 2WMEC 1UXUA 5L2OA 1AG8A 2HG2A 4I1WA 4NS3A 4ZVWA 4YWEA 4ITAA 4NU9A 2IMPA 3R64A 5FHZA 2JG7A 4LGZA 2VROA 1O05A 2ILUA 4LEMA 4A0MA 3JU8A 4Q92A 2BJKA 5DIBA 4JDCA 4I2RA 5J6BA 2ONNA 1O20A 4DALA 5AC0A 3VZ1A 3SZ9A 1BXSA 4NEAA 4NMKA 4OE2A 4QTOA 4U3WA 5L2NA 3V9IA 3N83A 2W8NA 5A2DC 1ZUMA 2J40A 4QJEB 3SZAA 4MPYA 2W8QA 4GNZA 4PXLB 5EYUA 4F3XA 2Y51A 1EYYA 4O5HA 4QETA 3U4JA 4E4GA 4OGDA 5KF0A 5KJ5A 4GO4A 3RHDA 4LH0A 4GO2A 5DRUA 3ROSA 1AD3A 3ZQAA 5J7IA 2O2QA 3MY7A 1UXTA 3QANA 4IYMA 4GO0A 3RHRA 5AC2A 5KLOA 1O01A 1UXRA 4I9BA 4ZUKA 4H73A 4ZVXA 2IY6A 4L1OA 5EUYA 3RHQA 1O00A 2ONMA 3R31A 2VLEA 2BHPA 3ETFA 3IWKA 2EIIA 3JZ4A 4OE6A 5A2DD 5J78A 1UZBA 3N82A 3V9LA 3EFVA 5L2MA 4PZ2A 4GHKA 3K2WA 2D4EA 2W8PA 1QI1A 2EHUA 1UXPA 4I3VA 2Y5DA 4I3TA 4IDSA 1CW3A 4QGKA 3VZ0A 4E3XA 1BPWA 2ID2A 4IHIA 2BJAA 3RHLA 5ABMA 2Y53A 3V9JA 2EJDA 2O2RA 4FQFA 4OUBA 2W8RA 4I3XA 4X2QA 1NZWA 2EITA 2O2PA 1EZ0A 2WMEA 4LH1A 4V3FA 4WP7A 4OU2A 4I3UA 3RHHA 4LH2A 4X0UA 3V9KA 1EUHA 1QI6A 2XDRA 4X4LA 5AC1A 1T90A 5KLNA 3N81A 1KY8A 5KLLA 4NPIA 2J6LA 2EHQA 4O6RA 5DBVA 1BI9A 2OPXA 3K9DA 1NZZA 3RHOA 3RJLA 3V9GA 4JZ6A 4WB9A 5EK6A 3RH9A 4L2OA 4KWGA 1VLUA 4LH3A 2W8OA 5EEBA 4OHTA 3VZ3A 4WPNA 2J5NA 3I44A 4GO3A 4YWVA 5A2DA 2WOXA 1UXQA 2Y52A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1A4Z A;  4MPB A;  4I8P A;  1WND A;  4LIH A;  1A4S A;  2BHQ A;  3PQA A;  1O9J A;  4ZXU A;  4ZZ7 A;  5L13 A;  1UXN A;  2H5G A;  1O04 A;  2ESD A;  5KLM A;  4ZVY A;  3INJ A;  3SZB A;  1NZX A;  1WNB A;  4OE4 A;  5EZ4 A;  4K57 A;  4I3W A;  4I25 A;  4QJE A;  4YWU A;  2EIW A;  4OE5 A;  4PXL A;  2ONP A;  4QF6 A;  4QYJ A;  4X0T A;  3V4C A;  1UXV A;  4KWF A;  4ITB A;  4H7N A;  4IDM A;  3TY7 A;  4C3S A;  5F2C A;  4I8Q A;  3RHM A;  4KNA A;  3V9H A;  2EJ6 A;  4CAZ A;  3PRL A;  5EXF A;  3VZ2 A;  4WJ9 A;  5EKC A;  5KLK A;  3RHP A;  2ONO A;  4IT9 A;  4NMJ A;  2EJL A;  5JRY A;  3B4W A;  4CBB A;  2QE0 A;  4ZWL A;  3INL A;  4JBE A;  3EK1 A;  4V37 A;  3RHJ A;  2EUH A;  4FR8 A;  3N80 A;  4I26 A;  4ZUL A;  4DNG A;  3IWJ A;  4H80 A;  4QN2 A;  4PXN A;  4V3F C;  1O02 A;  2WME C;  1UXU A;  5L2O A;  1AG8 A;  2HG2 A;  4I1W A;  4NS3 A;  4ZVW A;  4YWE A;  4ITA A;  4NU9 A;  2IMP A;  3R64 A;  5FHZ A;  2JG7 A;  4LGZ A;  2VRO A;  1O05 A;  2ILU A;  4LEM A;  4A0M A;  3JU8 A;  4Q92 A;  2BJK A;  5DIB A;  4JDC A;  4I2R A;  5J6B A;  2ONN A;  1O20 A;  4DAL A;  5AC0 A;  3VZ1 A;  3SZ9 A;  1BXS A;  4NEA A;  4NMK A;  4OE2 A;  4QTO A;  4U3W A;  5L2N A;  3V9I A;  3N83 A;  2W8N A;  5A2D C;  1ZUM A;  2J40 A;  4QJE B;  3SZA A;  4MPY A;  2W8Q A;  4GNZ A;  4PXL B;  5EYU A;  4F3X A;  2Y51 A;  1EYY A;  4O5H A;  4QET A;  3U4J A;  4E4G A;  4OGD A;  5KF0 A;  5KJ5 A;  4GO4 A;  3RHD A;  4LH0 A;  4GO2 A;  5DRU A;  3ROS A;  1AD3 A;  3ZQA A;  5J7I A;  2O2Q A;  3MY7 A;  1UXT A;  3QAN A;  4IYM A;  4GO0 A;  3RHR A;  5AC2 A;  5KLO A;  1O01 A;  1UXR A;  4I9B A;  4ZUK A;  4H73 A;  4ZVX A;  2IY6 A;  4L1O A;  5EUY A;  3RHQ A;  1O00 A;  2ONM A;  3R31 A;  2VLE A;  2BHP A;  3ETF A;  3IWK A;  2EII A;  3JZ4 A;  4OE6 A;  5A2D D;  5J78 A;  1UZB A;  3N82 A;  3V9L A;  3EFV A;  5L2M A;  4PZ2 A;  4GHK A;  3K2W A;  2D4E A;  2W8P A;  1QI1 A;  2EHU A;  1UXP A;  4I3V A;  2Y5D A;  4I3T A;  4IDS A;  1CW3 A;  4QGK A;  3VZ0 A;  4E3X A;  1BPW A;  2ID2 A;  4IHI A;  2BJA A;  3RHL A;  5ABM A;  2Y53 A;  3V9J A;  2EJD A;  2O2R A;  4FQF A;  4OUB A;  2W8R A;  4I3X A;  4X2Q A;  1NZW A;  2EIT A;  2O2P A;  1EZ0 A;  2WME A;  4LH1 A;  4V3F A;  4WP7 A;  4OU2 A;  4I3U A;  3RHH A;  4LH2 A;  4X0U A;  3V9K A;  1EUH A;  1QI6 A;  2XDR A;  4X4L A;  5AC1 A;  1T90 A;  5KLN A;  3N81 A;  1KY8 A;  5KLL A;  4NPI A;  2J6L A;  2EHQ A;  4O6R A;  5DBV A;  1BI9 A;  2OPX A;  3K9D A;  1NZZ A;  3RHO A;  3RJL A;  3V9G A;  4JZ6 A;  4WB9 A;  5EK6 A;  3RH9 A;  4L2O A;  4KWG A;  1VLU A;  4LH3 A;  2W8O A;  5EEB A;  4OHT A;  3VZ3 A;  4WPN A;  2J5N A;  3I44 A;  4GO3 A;  4YWV A;  5A2D A;  2WOX A;  1UXQ A;  2Y52 A; 
#chains in the Genus database with same CATH topology
 1A4Z A;  4MPB A;  4I8P A;  1WND A;  4LIH A;  1A4S A;  2BHQ A;  3PQA A;  1O9J A;  4ZXU A;  4ZZ7 A;  5L13 A;  1UXN A;  2H5G A;  1O04 A;  2ESD A;  5KLM A;  4ZVY A;  3INJ A;  3SZB A;  1NZX A;  1WNB A;  4OE4 A;  5EZ4 A;  4K57 A;  4I3W A;  4I25 A;  4QJE A;  4YWU A;  2EIW A;  4OE5 A;  4PXL A;  2ONP A;  4QF6 A;  4QYJ A;  4X0T A;  3V4C A;  1UXV A;  4KWF A;  4ITB A;  4H7N A;  4IDM A;  3TY7 A;  4C3S A;  5F2C A;  4I8Q A;  3RHM A;  4KNA A;  3V9H A;  2EJ6 A;  4CAZ A;  3PRL A;  5EXF A;  3VZ2 A;  4WJ9 A;  5EKC A;  5KLK A;  3RHP A;  2ONO A;  4IT9 A;  4NMJ A;  2EJL A;  5JRY A;  3B4W A;  4CBB A;  2QE0 A;  4ZWL A;  3INL A;  4JBE A;  3EK1 A;  4V37 A;  3RHJ A;  2EUH A;  4FR8 A;  3N80 A;  4I26 A;  4ZUL A;  4DNG A;  3IWJ A;  4H80 A;  4QN2 A;  4PXN A;  4V3F C;  1O02 A;  2WME C;  1UXU A;  5L2O A;  1AG8 A;  2HG2 A;  4I1W A;  4NS3 A;  4ZVW A;  4YWE A;  4ITA A;  4NU9 A;  2IMP A;  3R64 A;  5FHZ A;  2JG7 A;  4LGZ A;  2VRO A;  1O05 A;  2ILU A;  4LEM A;  4A0M A;  3JU8 A;  4Q92 A;  2BJK A;  5DIB A;  4JDC A;  4I2R A;  5J6B A;  2ONN A;  1O20 A;  4DAL A;  5AC0 A;  3VZ1 A;  3SZ9 A;  1BXS A;  4NEA A;  4NMK A;  4OE2 A;  4QTO A;  4U3W A;  5L2N A;  3V9I A;  3N83 A;  2W8N A;  5A2D C;  1ZUM A;  2J40 A;  4QJE B;  3SZA A;  4MPY A;  2W8Q A;  4GNZ A;  4PXL B;  5EYU A;  4F3X A;  2Y51 A;  1EYY A;  4O5H A;  4QET A;  3U4J A;  4E4G A;  4OGD A;  5KF0 A;  5KJ5 A;  4GO4 A;  3RHD A;  4LH0 A;  4GO2 A;  5DRU A;  3ROS A;  1AD3 A;  3ZQA A;  5J7I A;  2O2Q A;  3MY7 A;  1UXT A;  3QAN A;  4IYM A;  4GO0 A;  3RHR A;  5AC2 A;  5KLO A;  1O01 A;  1UXR A;  4I9B A;  4ZUK A;  4H73 A;  4ZVX A;  2IY6 A;  4L1O A;  5EUY A;  3RHQ A;  1O00 A;  2ONM A;  3R31 A;  2VLE A;  2BHP A;  3ETF A;  3IWK A;  2EII A;  3JZ4 A;  4OE6 A;  5A2D D;  5J78 A;  1UZB A;  3N82 A;  3V9L A;  3EFV A;  5L2M A;  4PZ2 A;  4GHK A;  3K2W A;  2D4E A;  2W8P A;  1QI1 A;  2EHU A;  1UXP A;  4I3V A;  2Y5D A;  4I3T A;  4IDS A;  1CW3 A;  4QGK A;  3VZ0 A;  4E3X A;  1BPW A;  2ID2 A;  4IHI A;  2BJA A;  3RHL A;  5ABM A;  2Y53 A;  3V9J A;  2EJD A;  2O2R A;  4FQF A;  4OUB A;  2W8R A;  4I3X A;  4X2Q A;  1NZW A;  2EIT A;  2O2P A;  1EZ0 A;  2WME A;  4LH1 A;  4V3F A;  4WP7 A;  4OU2 A;  4I3U A;  3RHH A;  4LH2 A;  4X0U A;  3V9K A;  1EUH A;  1QI6 A;  2XDR A;  4X4L A;  5AC1 A;  1T90 A;  5KLN A;  3N81 A;  1KY8 A;  5KLL A;  4NPI A;  2J6L A;  2EHQ A;  4O6R A;  5DBV A;  1BI9 A;  2OPX A;  3K9D A;  1NZZ A;  3RHO A;  3RJL A;  3V9G A;  4JZ6 A;  4WB9 A;  5EK6 A;  3RH9 A;  4L2O A;  4KWG A;  1VLU A;  4LH3 A;  2W8O A;  5EEB A;  4OHT A;  3VZ3 A;  4WPN A;  2J5N A;  3I44 A;  4GO3 A;  4YWV A;  5A2D A;  2WOX A;  1UXQ A;  2Y52 A; 
#chains in the Genus database with same CATH homology
 1A4Z A;  4MPB A;  4I8P A;  1WND A;  4LIH A;  1A4S A;  2BHQ A;  3PQA A;  1O9J A;  4ZXU A;  4ZZ7 A;  5L13 A;  1UXN A;  2H5G A;  1O04 A;  2ESD A;  5KLM A;  4ZVY A;  3INJ A;  3SZB A;  1NZX A;  1WNB A;  4OE4 A;  5EZ4 A;  4K57 A;  4I3W A;  4I25 A;  4QJE A;  4YWU A;  2EIW A;  4OE5 A;  4PXL A;  2ONP A;  4QF6 A;  4QYJ A;  4X0T A;  3V4C A;  1UXV A;  4KWF A;  4ITB A;  4H7N A;  4IDM A;  3TY7 A;  4C3S A;  5F2C A;  4I8Q A;  3RHM A;  4KNA A;  3V9H A;  2EJ6 A;  4CAZ A;  3PRL A;  5EXF A;  3VZ2 A;  4WJ9 A;  5EKC A;  5KLK A;  3RHP A;  2ONO A;  4IT9 A;  4NMJ A;  2EJL A;  5JRY A;  3B4W A;  4CBB A;  2QE0 A;  4ZWL A;  3INL A;  4JBE A;  3EK1 A;  4V37 A;  3RHJ A;  2EUH A;  4FR8 A;  3N80 A;  4I26 A;  4ZUL A;  4DNG A;  3IWJ A;  4H80 A;  4QN2 A;  4PXN A;  4V3F C;  1O02 A;  2WME C;  1UXU A;  5L2O A;  1AG8 A;  2HG2 A;  4I1W A;  4NS3 A;  4ZVW A;  4YWE A;  4ITA A;  4NU9 A;  2IMP A;  3R64 A;  5FHZ A;  2JG7 A;  4LGZ A;  2VRO A;  1O05 A;  2ILU A;  4LEM A;  4A0M A;  3JU8 A;  4Q92 A;  2BJK A;  5DIB A;  4JDC A;  4I2R A;  5J6B A;  2ONN A;  1O20 A;  4DAL A;  5AC0 A;  3VZ1 A;  3SZ9 A;  1BXS A;  4NEA A;  4NMK A;  4OE2 A;  4QTO A;  4U3W A;  5L2N A;  3V9I A;  3N83 A;  2W8N A;  5A2D C;  1ZUM A;  2J40 A;  4QJE B;  3SZA A;  4MPY A;  2W8Q A;  4GNZ A;  4PXL B;  5EYU A;  4F3X A;  2Y51 A;  1EYY A;  4O5H A;  4QET A;  3U4J A;  4E4G A;  4OGD A;  5KF0 A;  5KJ5 A;  4GO4 A;  3RHD A;  4LH0 A;  4GO2 A;  5DRU A;  3ROS A;  1AD3 A;  3ZQA A;  5J7I A;  2O2Q A;  3MY7 A;  1UXT A;  3QAN A;  4IYM A;  4GO0 A;  3RHR A;  5AC2 A;  5KLO A;  1O01 A;  1UXR A;  4I9B A;  4ZUK A;  4H73 A;  4ZVX A;  2IY6 A;  4L1O A;  5EUY A;  3RHQ A;  1O00 A;  2ONM A;  3R31 A;  2VLE A;  2BHP A;  3ETF A;  3IWK A;  2EII A;  3JZ4 A;  4OE6 A;  5A2D D;  5J78 A;  1UZB A;  3N82 A;  3V9L A;  3EFV A;  5L2M A;  4PZ2 A;  4GHK A;  3K2W A;  2D4E A;  2W8P A;  1QI1 A;  2EHU A;  1UXP A;  4I3V A;  2Y5D A;  4I3T A;  4IDS A;  1CW3 A;  4QGK A;  3VZ0 A;  4E3X A;  1BPW A;  2ID2 A;  4IHI A;  2BJA A;  3RHL A;  5ABM A;  2Y53 A;  3V9J A;  2EJD A;  2O2R A;  4FQF A;  4OUB A;  2W8R A;  4I3X A;  4X2Q A;  1NZW A;  2EIT A;  2O2P A;  1EZ0 A;  2WME A;  4LH1 A;  4V3F A;  4WP7 A;  4OU2 A;  4I3U A;  3RHH A;  4LH2 A;  4X0U A;  3V9K A;  1EUH A;  1QI6 A;  2XDR A;  4X4L A;  5AC1 A;  1T90 A;  5KLN A;  3N81 A;  1KY8 A;  5KLL A;  4NPI A;  2J6L A;  2EHQ A;  4O6R A;  5DBV A;  1BI9 A;  2OPX A;  3K9D A;  1NZZ A;  3RHO A;  3RJL A;  3V9G A;  4JZ6 A;  4WB9 A;  5EK6 A;  3RH9 A;  4L2O A;  4KWG A;  1VLU A;  4LH3 A;  2W8O A;  5EEB A;  4OHT A;  3VZ3 A;  4WPN A;  2J5N A;  3I44 A;  4GO3 A;  4YWV A;  5A2D A;  2WOX A;  1UXQ A;  2Y52 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4KWFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations